prot_H-paniculata_contig19887.5078.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19887.5078.1
Unique Nameprot_H-paniculata_contig19887.5078.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length103
Homology
[Close]
BLAST of mRNA_H-paniculata_contig19887.5078.1 vs. uniprot
Match: D7FWB5_ECTSI (Amino acid transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.370e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0 
Query:   25 FRPLFALAGCLTVLVVFVFPAYLNLISQRMCIERFGTYKTPFTGVISSSKPVLVFFIVFGLVLFVGLLVNDVVSIIS 101
            F  +   AGCLTV++ FVFPAY+NL+S+RMC ERFG  KTPFTG I+SS P L   I FGL+LFV L+ +D+ +I+S
Sbjct:  485 FAAIVGYAGCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACIGFGLLLFVCLIGDDIATILS 561
[Close]
BLAST of mRNA_H-paniculata_contig19887.5078.1 vs. uniprot
Match: A0A6H5JRD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.680e-17
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:   33 GCLTVLVVFVFPAYLNLISQRMCIERFGTYKTPFTGVISSSKPVLVFFIVFGLVLFVGLLVNDVVSIIS 101
            GCLTV++ FVFPAY+NL+S+RMC ERFG  KTPFTG I+SS P L   I FGL+LFV L+ +D+ +I+S
Sbjct:  361 GCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACIGFGLLLFVCLIGDDIATILS 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19887.5078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWB5_ECTSI2.370e-1858.44Amino acid transporter n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRD8_9PHAE1.680e-1762.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 101..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availableTMHMMTMhelixcoord: 28..50
NoneNo IPR availableTMHMMTMhelixcoord: 71..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19887contigH-paniculata_contig19887:1957..3672 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19887.5078.1mRNA_H-paniculata_contig19887.5078.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19887 368..4316 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19887.5078.1 ID=prot_H-paniculata_contig19887.5078.1|Name=mRNA_H-paniculata_contig19887.5078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MRVTHPPPEPASLHISWLPPADRLFRPLFALAGCLTVLVVFVFPAYLNLI
SQRMCIERFGTYKTPFTGVISSSKPVLVFFIVFGLVLFVGLLVNDVVSII
SG*
back to top