mRNA_H-paniculata_contig19887.5078.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19887.5078.1
Unique NamemRNA_H-paniculata_contig19887.5078.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19887.5078.1 vs. uniprot
Match: D7FWB5_ECTSI (Amino acid transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.760e-14
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:  717 FRPLFALAGCLTVLVVFVFPAYLNLISQRMCIERFGTYKTPFTGVISSSKPVLVFFIVFGLVLFVGLLVNDVVSIIS 947
            F  +   AGCLTV++ FVFPAY+NL+S+RMC ERFG  KTPFTG I+SS P L   I FGL+LFV L+ +D+ +I+S
Sbjct:  485 FAAIVGYAGCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACIGFGLLLFVCLIGDDIATILS 561
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BLAST of mRNA_H-paniculata_contig19887.5078.1 vs. uniprot
Match: A0A6H5JRD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.610e-14
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 3 
Query:  741 GCLTVLVVFVFPAYLNLISQRMCIERFGTYKTPFTGVISSSKPVLVFFIVFGLVLFVGLLVNDVVSIIS 947
            GCLTV++ FVFPAY+NL+S+RMC ERFG  KTPFTG I+SS P L   I FGL+LFV L+ +D+ +I+S
Sbjct:  361 GCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACIGFGLLLFVCLIGDDIATILS 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19887.5078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWB5_ECTSI1.760e-1458.44Amino acid transporter n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRD8_9PHAE6.610e-1462.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19887contigH-paniculata_contig19887:368..4316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D7FWB5
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Transmembrane amino acid transporter protein
EggNOG OGs2SA9U@2759,KOG3832@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2542
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19887.5078.1prot_H-paniculata_contig19887.5078.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19887 1957..3672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.123453-UTR-H-paniculata_contig19887:367..19561622929501.123453-UTR-H-paniculata_contig19887:367..1956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19887 368..1956 -
1691480888.4039953-UTR-H-paniculata_contig19887:367..19561691480888.4039953-UTR-H-paniculata_contig19887:367..1956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19887 368..1956 -
1622929501.160228-UTR-H-paniculata_contig19887:3672..43161622929501.160228-UTR-H-paniculata_contig19887:3672..4316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19887 3673..4316 -
1691480888.4312663-UTR-H-paniculata_contig19887:3672..43161691480888.4312663-UTR-H-paniculata_contig19887:3672..4316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19887 3673..4316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.136411-CDS-H-paniculata_contig19887:1956..21091622929501.136411-CDS-H-paniculata_contig19887:1956..2109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19887 1957..2109 -
1691480888.415249-CDS-H-paniculata_contig19887:1956..21091691480888.415249-CDS-H-paniculata_contig19887:1956..2109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19887 1957..2109 -
1622929501.1489549-CDS-H-paniculata_contig19887:3516..36721622929501.1489549-CDS-H-paniculata_contig19887:3516..3672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19887 3517..3672 -
1691480888.4230168-CDS-H-paniculata_contig19887:3516..36721691480888.4230168-CDS-H-paniculata_contig19887:3516..3672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19887 3517..3672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19887.5078.1

>prot_H-paniculata_contig19887.5078.1 ID=prot_H-paniculata_contig19887.5078.1|Name=mRNA_H-paniculata_contig19887.5078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MRVTHPPPEPASLHISWLPPADRLFRPLFALAGCLTVLVVFVFPAYLNLI
SQRMCIERFGTYKTPFTGVISSSKPVLVFFIVFGLVLFVGLLVNDVVSII
SG*
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mRNA from alignment at H-paniculata_contig19887:368..4316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19887.5078.1 ID=mRNA_H-paniculata_contig19887.5078.1|Name=mRNA_H-paniculata_contig19887.5078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3949bp|location=Sequence derived from alignment at H-paniculata_contig19887:368..4316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAATTTGAAGCTATTCTCTACACTAGTTTCAGGTCAACCTCCTCGTCC
AAGTACCTTTAGACAGGGGATACCTAGGCAGCAATGTGGCCTTCGTAGGT
CGTTCAACAATAATCGAGTAGACGACTGTGCTGAGGTGTGACGGTGCGAG
CCACGAGCTGCAGCGGGAAGACGAGAAACAGGGGTATGTCGGGGGGCGGG
GCTCGTGCGATGCGGCTACTGGCTTGCCACATTTTCTATTTTCTTTTGTT
TTTCGGTCGATAATGACAGCATTGATGATTGCGTAGGTTGCCTGGTACTG
ATAGATGTTCTCGGTACGGAATCACAGCATTTATTTGATTGCGTAGGTGG
GGCTCTATTTACGGCCTCCCCGAACACAGCGTTTCTGTGTATACAGTACC
CTTTCTTGGCCAGTTCCACGTTTTGAGTTGTACTGTTCGGGTATAGTATA
TGGACCAGGTTGTCAGGTGTACAACTAGCTTAACACATCGGTTTTATATG
CTGAATAGGGCCACCACTTGTTTTTGTCCTGGCCGTGAATTTTAACAACA
GCAACTCGGTCGCTCTTGAACTATTCGTGTAATCGCGCGTATCATTTTTG
CGCCGCATCTTATTTGACACATTGCTGAAGTTTGTCGGCTGGAAATGCGT
GTAACACACCCACCCCCTGAACCTGCAAGTCTACACATCTCTTGGTTGCC
GCCTGCCGACCGCCTCTTCCGTCCTTTGTTTGCTTTGGCAGGGTGCTTGA
CCGTATTGGTCGTGTTCGTGTTCCCGGCATATCTTAACCTTATTTCCCAG
GTGAGTAGTTTGGTGCAGTAGCACTCGAACGGACCGATACTCCAACGAGT
AGGCGTGAAAGTTTAGGATAAAGTGTTCCCGCCGTTGAGCGATATACATT
GTCGCAAAAAAAAAAACCCGATGAGCTTGAATTTTTCATCTCATAAAACA
GCAATCGAATGCCCCTATTTTCTACTTTCGATGAAATTGGATTTTTGAAT
CTCGAGATGTTGGGTATATATTTTTTGCCTAAGAAAAGATTAATCCTACG
CTTGTATGGTTGGCTGTTTGCAGCAGTGGTTGACCACGGTGGTGCCCATG
CTGTCAGCTAGTTGTCGTTGTACCTATTTATGGTGGAGCTGTGCACTGTG
ACGCGCTGTAGTTCATGGCCCACGTCGCCTGCTCGCCACTTTTGCATGTG
TGACGGTATTGTGCTAGCTTGGGTTGTTGGTGTTAATTGAGTTTAGTGAG
CTGCCTGGTATTTGTAAGTCATTTTTGTGTCTCGTTAGTTGAAGTACCTC
GAGACTGTTTTTTTTTTTTTTAACCCCCGGACGGCTGAGGCAAAAATATT
AGCCGATGCTTTCATACTCTGAAGTATTTGACCAAAGTATGTCTACCTTT
CCTTTGACAGAACAGAGTTATTTATTCCTCTGCGGGGTAGGCGCCACCCC
GGTTCGGCCGAACCAACCTGGAGACTGTTATATGCCGTGGTCTATCTCGG
CCTACGATAGGGGGCACTCCCGTTCTGTCGCACAAGGGTCAGTTCCAGGA
GGTTTCATATATCACTCTCTCTCTCTAATAGGATTGAACACGGCATTAGT
TGTTGGTGACAGTCAGCGAACTACTCCGCATACAGCCAAAAATGAAAACG
CAGGCAAATTGAGTTGATGTGGCTAAGCTATTTGCGTCACCACTCTCGGG
AGTTCTTGTGCTCAAAATGTGACCGTCATATCACAGGACGACGTCGTAGG
AAAGAAGAACGATATTCGAAAAACCTTCTGAAGGCGAGCCTGTGGAAAGA
CGTTTTAAAACAGTAGAGTGCGGTCTTCATTGAATGGGAAGCTGGTGCTG
GTGCTGGTGCTGGTGCTGGTGCTGGTGTCGAAACGGTGTTCTTTCGATAC
TGTTTCCAAGTGTTTTTCTTTTTTCTTACTTCGCAGTCTATCGAGAATCA
TGTTTGAATTTTTTTAACGCCGCAGGAACTGTCCCATGTGGCAACGACCG
CACGTGAACAAATAGACCAGAAGGCGTTGCAAGCACACTGCATGTCATGG
CGCGGCACCACCTAGAACGCAAAACAGCCCTTTGAGGGTTGCCTGGTTAG
GCAATCCGCCCGGTTTCTGAGGTGTTGGGAACGAGCGCATGCTTGCCAGC
TTTCACCGAATCTTTTTTTCCACCCCTACACGCCATGCTCGTTGCTCGCG
TTGTCAGAGGATGTGCATCGAGCGGTTCGGCACCTACAAGACGCCATTCA
CTGGCGTAATATCGTCGTCTAAACCCGTCCTGGTGTTTTTTATAGTCTTT
GGTCTGGTGTTATTCGTAGGGTTGCTAGTGAATGATGTTGTCTCCATTAT
TTCTGGGTAGCTTCTTACAGAAGGCTTGATATCATTTGTCACAGCAGGGC
GCGATACTCGCCCCGATGTGCCGGACTGTTTTCACATAATTTGTTGAAAA
TTCTAGAGTCACATCTATCTCGTTGCACCAAATTCGGCCAGCAGTAGTTT
ACAGGGGTAACGTTTTGAAGTAGTTTGGTTTCGGGGTTGTAATGAGGGAG
CCAGGGCAGAAAAGGCACTGACGTGTCTTTGGAGAATGGCTTAAGACGGA
TTTGGGTGGTCGAAAATGTCCGGGTTTGGTTATGGAATATTGGCGTCCCA
GCGTTGGTGTTTTTTCACCACCCAGGGTTTATAAGGGGGGCATAACCATG
GTAGATCTGAAGAGGAACGAGTTTAGCATCGTCACAGTGTAGTTGATACT
GATAAGCGCAAGCTGAAAAACACCGTATCGTGAACCATCTCCGTGGAGCT
CAACATAGGGTTGTGGGGTCCGGTCACACCGCGTGTGATCTGGGTTCGAA
CCAGTATGTCCCTTGGAGTAAAACGTTGAATATATTCACATGCATTCATT
AGTGATGCCTGATTGATCGCGGCCTCTAGAGCTCGGCAGGTCTAAAAGAG
ATTAGGTCGAGAATTAGTGCGGAAAGCGTCTAACGTCAAACAGAAATGCC
CATAAATGAGCGTGATTTGGGGACATTCGTTTTTCTCCTGTTTAGCTGTC
GACTTACGATTATCATTAGCAATCGGTCATGGTCTGGGGCGCATAGTGTA
CACGAGCTCATTCTGAAACTCAGGCGAATACCGTTTGATTTCGGTGGCGA
ATACGCTTAAGTATTCGTCTTTGTCCGGGGGGGTGATCTGTTTCCTTCAG
AGCGTTTTTTCACGCTGTAGGTGTTCTTTTCGTGTTGTATTCAAGGATAG
TTCGATTGAATTTCATTGTCGGGAATGCTATTGGTGTTTTATGGTTCTAT
TGCTTGTAGAACAATACCAGTTTTTCGTCTGTGATTTTTATGTTGTCAAT
GGCGCCGGTGGCTGCGCTCAGGGATGGGCGCCGCCGTTTGTCACCCGTCA
AAGGTAGCATGATTCTCTTTAGTCGGCTGTCGCCGAGCAGAGAACGAGAT
AAATTTTGGAATAACGAGTATCGGATTAATGCTGGGGGAAAAGGCTGGAT
GACGTCATTAAACCCGTCGCAAACCCAGTTTTAGAGTAGCAACCGTAAGA
TGATGCCTAGCGGTTGGTATCACCCTGTAAAGCGCAGGCGAGGCCTTACA
AAGATTTGGCATGGTATAGCGGTTGGTCTTGGCATTGTATAGATGTGAGC
GAGGTATTCCACAGCTTTGTGCCTTTTTTACATTTGCTGAATTTACCTGT
CTTCGCGCTCACCGCTTGCTTTCATTGGCCTCGCGGCGCTGCTGCACTCC
TGTAGCGTGCTAAGGAATCTCTCTCTCTCTCTTGGTGTATCCGATGTAAT
AGACCTCCGTACAGTGTTCGGGTATGTTGAGATACTTGGTCAACGGAAAG
GACAGGCAAGTTCGTCACTTACATCACCCAAAATTATTACGTGGCAAAGC
TGCGGCACGTAGACGCAAATTATGTTCGATCAAGCGCACAGTTCTTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig19887:368..4316-

>mRNA_H-paniculata_contig19887.5078.1 ID=mRNA_H-paniculata_contig19887.5078.1|Name=mRNA_H-paniculata_contig19887.5078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig19887:368..4316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGTAACACACCCACCCCCTGAACCTGCAAGTCTACACATCTCTTG
GTTGCCGCCTGCCGACCGCCTCTTCCGTCCTTTGTTTGCTTTGGCAGGGT
GCTTGACCGTATTGGTCGTGTTCGTGTTCCCGGCATATCTTAACCTTATT
TCCCAGATGCGTGTAACACACCCACCCCCTGAACCTGCAAGTCTACACAT
CTCTTGGTTGCCGCCTGCCGACCGCCTCTTCCGTCCTTTGTTTGCTTTGG
CAGGGTGCTTGACCGTATTGGTCGTGTTCGTGTTCCCGGCATATCTTAAC
CTTATTTCCCAGAGGATGTGCATCGAGCGGTTCGGCACCTACAAGACGCC
ATTCACTGGCGTAATATCGTCGTCTAAACCCGTCCTGGTGTTTTTTATAG
TCTTTGGTCTGGTGTTATTCGTAGGGTTGCTAGTGAATGATGTTGTCTCC
ATTATTTCTGGGTAGAGGATGTGCATCGAGCGGTTCGGCACCTACAAGAC
GCCATTCACTGGCGTAATATCGTCGTCTAAACCCGTCCTGGTGTTTTTTA
TAGTCTTTGGTCTGGTGTTATTCGTAGGGTTGCTAGTGAATGATGTTGTC
TCCATTATTTCTGGGTAG
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