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Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 128..177
e-value: 3.4E-8
score: 33.5
coord: 575..631
e-value: 1.1E-7
score: 31.8 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 446..477
e-value: 3.7E-7
score: 27.9
coord: 411..444
e-value: 7.8E-7
score: 26.9
coord: 376..410
e-value: 3.1E-6
score: 25.0
coord: 518..553
e-value: 1.8E-7
score: 28.9
coord: 237..270
e-value: 0.0011
score: 17.0
coord: 589..624
e-value: 1.1E-4
score: 20.2
coord: 341..375
e-value: 6.1E-8
score: 30.4
coord: 482..513
e-value: 8.0E-6
score: 23.7
coord: 306..340
e-value: 1.3E-7
score: 29.3
coord: 272..305
e-value: 4.1E-8
score: 30.9
coord: 554..587
e-value: 4.6E-9
score: 33.9
coord: 201..235
e-value: 4.2E-9
score: 34.0
coord: 166..200
e-value: 2.4E-5
score: 22.2 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 272..300
e-value: 1.8E-5
score: 24.7 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 515..563
e-value: 1.2E-12
score: 47.8
coord: 198..245
e-value: 7.4E-13
score: 48.5
coord: 444..491
e-value: 1.2E-9
score: 38.2
coord: 373..420
e-value: 2.0E-12
score: 47.1
coord: 303..352
e-value: 1.6E-14
score: 53.8 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 374..408
score: 11.455 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 304..338
score: 13.132 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 339..373
score: 12.496 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 269..303
score: 11.97 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 164..198
score: 11.542 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 409..443
score: 12.047 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 444..478
score: 11.772 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 516..551
score: 10.622 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 480..514
score: 10.786 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 234..268
score: 10.633 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 552..586
score: 12.814 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 199..233
score: 12.88 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 587..621
score: 8.44 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 129..163
score: 10.227 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 356..512
e-value: 5.1E-51
score: 175.8 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 213..355
e-value: 6.6E-43
score: 149.4
coord: 513..652
e-value: 1.1E-33
score: 119.1 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 88..210
e-value: 1.2E-27
score: 98.4 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 477..634
coord: 325..511
coord: 195..338
coord: 106..220 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig19883.5076.1 ID=prot_H-paniculata_contig19883.5076.1|Name=mRNA_H-paniculata_contig19883.5076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=660bp
MALRHVIGAAKEVRKVRQYSQAAHTSVGFASLSEAGRGVAASKTCEALRD
ARYNRDGEVTGRIGGWSENVRAERQRGGRRPRRASPEMFAITKSYMGRLK
QAGACQSWHEAREILKEAIARDDAACVTNIYVYSEALKVAAQCGKWKEAL
GVVSVMRKKGVQPDVVVYNSTITACGNGRNWKQAVRLLREMEGDGVTPDV
VSYNSAITACGNNGQWEQAIRILKDMSKAGIVPDVKSYSSAITACDKGKQ
WGEAMNLLREMQEADVTPDVIIYNSAISSCGNEGQWEAAINLLREMQKND
LTPDVVSYNSTITACAEGGQWEEAMALLKDMQRDGVAPDVVSYNSVITAC
ARGGQPVQAVGLMAEMRREGVSPDVVSYNSAIAACGNDRQSAQALDLLRE
MAREGISPDVVSYNSAIRACGNCGQWEQAMGLLREMYSKGLTADVVSYSS
AITACGKARRWEEAMGLLREMRRQGAVSPNNVTYSAAITSCGESGKWEQA
VGLLREMQKEGAVTPDNVTYSSVITACGVSGKWEQAIDLLKEMQQRSGLA
PNVVTYTAVITACGEGGRWEHAVDLLRKMQSEGVAPSVVSYNSAITACGK
GGSGHEAVRILRKIHRSDSIVPNVHSYNAVMFALWRSSIQSKPNGCIQMD
ATNVSRERQ* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
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