mRNA_H-paniculata_contig19883.5076.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19883.5076.1
Unique NamemRNA_H-paniculata_contig19883.5076.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19883.5076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19883contigH-paniculata_contig19883:1873..4305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2433
Cds size1980
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19883.5076.1prot_H-paniculata_contig19883.5076.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19883 1898..3877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.946428-UTR-H-paniculata_contig19883:1872..18971622929500.946428-UTR-H-paniculata_contig19883:1872..1897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19883 1873..1897 +
1691480888.3385305-UTR-H-paniculata_contig19883:1872..18971691480888.3385305-UTR-H-paniculata_contig19883:1872..1897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19883 1873..1897 +
1622929500.9958751-UTR-H-paniculata_contig19883:3877..43051622929500.9958751-UTR-H-paniculata_contig19883:3877..4305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19883 3878..4305 +
1691480888.3576078-UTR-H-paniculata_contig19883:3877..43051691480888.3576078-UTR-H-paniculata_contig19883:3877..4305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19883 3878..4305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.978699-CDS-H-paniculata_contig19883:1897..38771622929500.978699-CDS-H-paniculata_contig19883:1897..3877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19883 1898..3877 +
1691480888.3497794-CDS-H-paniculata_contig19883:1897..38771691480888.3497794-CDS-H-paniculata_contig19883:1897..3877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19883 1898..3877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19883.5076.1

>prot_H-paniculata_contig19883.5076.1 ID=prot_H-paniculata_contig19883.5076.1|Name=mRNA_H-paniculata_contig19883.5076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=660bp
MALRHVIGAAKEVRKVRQYSQAAHTSVGFASLSEAGRGVAASKTCEALRD
ARYNRDGEVTGRIGGWSENVRAERQRGGRRPRRASPEMFAITKSYMGRLK
QAGACQSWHEAREILKEAIARDDAACVTNIYVYSEALKVAAQCGKWKEAL
GVVSVMRKKGVQPDVVVYNSTITACGNGRNWKQAVRLLREMEGDGVTPDV
VSYNSAITACGNNGQWEQAIRILKDMSKAGIVPDVKSYSSAITACDKGKQ
WGEAMNLLREMQEADVTPDVIIYNSAISSCGNEGQWEAAINLLREMQKND
LTPDVVSYNSTITACAEGGQWEEAMALLKDMQRDGVAPDVVSYNSVITAC
ARGGQPVQAVGLMAEMRREGVSPDVVSYNSAIAACGNDRQSAQALDLLRE
MAREGISPDVVSYNSAIRACGNCGQWEQAMGLLREMYSKGLTADVVSYSS
AITACGKARRWEEAMGLLREMRRQGAVSPNNVTYSAAITSCGESGKWEQA
VGLLREMQKEGAVTPDNVTYSSVITACGVSGKWEQAIDLLKEMQQRSGLA
PNVVTYTAVITACGEGGRWEHAVDLLRKMQSEGVAPSVVSYNSAITACGK
GGSGHEAVRILRKIHRSDSIVPNVHSYNAVMFALWRSSIQSKPNGCIQMD
ATNVSRERQ*
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mRNA from alignment at H-paniculata_contig19883:1873..4305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19883.5076.1 ID=mRNA_H-paniculata_contig19883.5076.1|Name=mRNA_H-paniculata_contig19883.5076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2433bp|location=Sequence derived from alignment at H-paniculata_contig19883:1873..4305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTTCGATTCATTGGCTTGATACCATGGCACTGCGTCATGTTATCGGCG
CTGCGAAAGAGGTGAGGAAGGTGCGGCAATACTCTCAAGCGGCGCACACT
TCGGTCGGTTTTGCTAGTCTGTCAGAAGCCGGGAGAGGCGTCGCTGCAAG
CAAGACATGTGAAGCGCTAAGGGACGCTAGGTATAATCGAGACGGCGAGG
TTACTGGGCGCATAGGTGGATGGAGCGAGAATGTCAGGGCGGAGAGGCAG
CGTGGTGGGCGCAGGCCGAGGCGGGCTTCTCCTGAGATGTTTGCCATTAC
CAAGTCATACATGGGGCGATTAAAGCAGGCCGGAGCCTGTCAAAGTTGGC
ACGAAGCGAGAGAAATCTTGAAGGAAGCCATCGCTCGTGATGATGCAGCC
TGTGTCACGAATATTTATGTATATTCGGAGGCCTTGAAAGTTGCAGCGCA
ATGCGGCAAATGGAAGGAAGCGCTGGGAGTTGTGTCTGTCATGAGGAAAA
AGGGGGTGCAGCCAGACGTGGTAGTTTATAACTCAACAATCACAGCTTGC
GGAAACGGCAGGAATTGGAAGCAAGCGGTGCGTCTGTTGAGGGAGATGGA
AGGGGACGGTGTCACTCCCGATGTCGTAAGCTACAATTCGGCCATCACAG
CTTGTGGAAACAACGGGCAGTGGGAACAGGCTATCCGCATTTTGAAGGAT
ATGTCGAAGGCAGGCATCGTTCCTGACGTCAAGAGCTACAGCTCGGCAAT
CACGGCGTGCGATAAAGGCAAGCAGTGGGGGGAAGCCATGAATCTGTTGA
GGGAGATGCAAGAGGCAGATGTAACCCCCGATGTTATCATCTACAATTCA
GCCATCAGTTCGTGCGGAAACGAAGGGCAGTGGGAGGCAGCCATTAATCT
GCTGAGGGAGATGCAGAAAAATGATCTAACCCCGGATGTAGTGAGCTATA
ACTCGACGATCACAGCGTGTGCAGAGGGTGGCCAATGGGAGGAGGCCATG
GCTTTGTTGAAGGATATGCAACGTGACGGTGTCGCGCCAGATGTCGTGAG
CTACAACTCGGTCATAACAGCGTGCGCAAGGGGCGGGCAACCGGTACAGG
CTGTGGGTTTGATGGCAGAGATGCGGAGGGAAGGTGTCTCACCCGACGTG
GTAAGCTACAATTCGGCCATAGCGGCATGTGGAAACGACAGACAATCTGC
GCAAGCCCTGGATCTATTAAGGGAGATGGCGAGGGAAGGTATTAGCCCCG
ATGTCGTGAGCTACAACTCGGCGATTAGAGCGTGTGGAAACTGTGGGCAG
TGGGAGCAGGCCATGGGTCTTTTGAGGGAGATGTACAGCAAGGGTCTCAC
TGCTGATGTCGTCAGCTACAGCTCGGCGATTACGGCGTGCGGAAAAGCCC
GGCGATGGGAGGAGGCCATGGGTCTGTTGAGGGAGATGAGGAGGCAGGGT
GCAGTAAGTCCTAACAACGTGACCTATAGCGCTGCAATCACTTCATGCGG
AGAGAGCGGAAAGTGGGAGCAGGCTGTGGGCTTATTGAGGGAGATGCAGA
AGGAGGGTGCAGTGACCCCTGATAACGTAACCTATAGCTCAGTGATCACG
GCATGTGGAGTAAGTGGAAAATGGGAGCAGGCTATAGACCTGTTGAAGGA
AATGCAGCAGAGGAGTGGTCTTGCCCCTAATGTCGTGACCTACACAGCGG
TCATAACAGCATGTGGGGAAGGTGGAAGGTGGGAACATGCTGTGGATCTG
TTGAGGAAGATGCAAAGCGAGGGTGTTGCTCCAAGTGTTGTGAGCTACAA
TTCGGCAATAACAGCATGCGGGAAGGGTGGTAGCGGGCACGAGGCGGTTC
GCATATTGAGAAAGATCCACAGATCGGATTCTATTGTGCCTAATGTTCAC
TCCTACAACGCTGTCATGTTTGCTCTATGGCGTTCGTCGATCCAATCGAA
ACCAAACGGTTGCATCCAGATGGATGCCACGAATGTTTCGAGAGAGCGCC
AATAATGTGCACACGATGGCAAGCTCGTTGCGTTAGATGCCTCAATTTGA
GATCGTGGCAGGTGGTGGGCCAAGGCTGGTTACTAGTCGGGCTCGATCGG
TACTATTTTTGCCCCAACAGATGCGTACGGTGTTTCATACACTGTACTAT
CTATTCTTGCGAAGAATGAAAATGTCGTCGTCTTCCCCATGTAGGTTACA
CTGTTGTACTGTTCAATATAATAATTTGAAAGAACGTGACCGGGCATGGA
GAGAGCAATGTTCATACCATTTGATTCTGATTTGTGTGACTGCTCGGTGA
GTGATAATGAAAAAAACGTGCTGTGGACCTAACCCTAACTCCAACTTTTC
TCCTGTGGAGAGGTCTGCGACGAATTGTCTATCCTATCGCATGCAGTTTT
CTTGGTATCGGTACGTAACTTCCGTCATTTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig19883:1873..4305+

>mRNA_H-paniculata_contig19883.5076.1 ID=mRNA_H-paniculata_contig19883.5076.1|Name=mRNA_H-paniculata_contig19883.5076.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3960bp|location=Sequence derived from alignment at H-paniculata_contig19883:1873..4305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACTGCGTCATGTTATCGGCGCTGCGAAAGAGGTGAGGAAGGTGCG
GCAATACTCTCAAGCGGCGCACACTTCGGTCGGTTTTGCTAGTCTGTCAG
AAGCCGGGAGAGGCGTCGCTGCAAGCAAGACATGTGAAGCGCTAAGGGAC
GCTAGGTATAATCGAGACGGCGAGGTTACTGGGCGCATAGGTGGATGGAG
CGAGAATGTCAGGGCGGAGAGGCAGCGTGGTGGGCGCAGGCCGAGGCGGG
CTTCTCCTGAGATGTTTGCCATTACCAAGTCATACATGGGGCGATTAAAG
CAGGCCGGAGCCTGTCAAAGTTGGCACGAAGCGAGAGAAATCTTGAAGGA
AGCCATCGCTCGTGATGATGCAGCCTGTGTCACGAATATTTATGTATATT
CGGAGGCCTTGAAAGTTGCAGCGCAATGCGGCAAATGGAAGGAAGCGCTG
GGAGTTGTGTCTGTCATGAGGAAAAAGGGGGTGCAGCCAGACGTGGTAGT
TTATAACTCAACAATCACAGCTTGCGGAAACGGCAGGAATTGGAAGCAAG
CGGTGCGTCTGTTGAGGGAGATGGAAGGGGACGGTGTCACTCCCGATGTC
GTAAGCTACAATTCGGCCATCACAGCTTGTGGAAACAACGGGCAGTGGGA
ACAGGCTATCCGCATTTTGAAGGATATGTCGAAGGCAGGCATCGTTCCTG
ACGTCAAGAGCTACAGCTCGGCAATCACGGCGTGCGATAAAGGCAAGCAG
TGGGGGGAAGCCATGAATCTGTTGAGGGAGATGCAAGAGGCAGATGTAAC
CCCCGATGTTATCATCTACAATTCAGCCATCAGTTCGTGCGGAAACGAAG
GGCAGTGGGAGGCAGCCATTAATCTGCTGAGGGAGATGCAGAAAAATGAT
CTAACCCCGGATGTAGTGAGCTATAACTCGACGATCACAGCGTGTGCAGA
GGGTGGCCAATGGGAGGAGGCCATGGCTTTGTTGAAGGATATGCAACGTG
ACGGTGTCGCGCCAGATGTCGTGAGCTACAACTCGGTCATAACAGCGTGC
GCAAGGGGCGGGCAACCGGTACAGGCTGTGGGTTTGATGGCAGAGATGCG
GAGGGAAGGTGTCTCACCCGACGTGGTAAGCTACAATTCGGCCATAGCGG
CATGTGGAAACGACAGACAATCTGCGCAAGCCCTGGATCTATTAAGGGAG
ATGGCGAGGGAAGGTATTAGCCCCGATGTCGTGAGCTACAACTCGGCGAT
TAGAGCGTGTGGAAACTGTGGGCAGTGGGAGCAGGCCATGGGTCTTTTGA
GGGAGATGTACAGCAAGGGTCTCACTGCTGATGTCGTCAGCTACAGCTCG
GCGATTACGGCGTGCGGAAAAGCCCGGCGATGGGAGGAGGCCATGGGTCT
GTTGAGGGAGATGAGGAGGCAGGGTGCAGTAAGTCCTAACAACGTGACCT
ATAGCGCTGCAATCACTTCATGCGGAGAGAGCGGAAAGTGGGAGCAGGCT
GTGGGCTTATTGAGGGAGATGCAGAAGGAGGGTGCAGTGACCCCTGATAA
CGTAACCTATAGCTCAGTGATCACGGCATGTGGAGTAAGTGGAAAATGGG
AGCAGGCTATAGACCTGTTGAAGGAAATGCAGCAGAGGAGTGGTCTTGCC
CCTAATGTCGTGACCTACACAGCGGTCATAACAGCATGTGGGGAAGGTGG
AAGGTGGGAACATGCTGTGGATCTGTTGAGGAAGATGCAAAGCGAGGGTG
TTGCTCCAAGTGTTGTGAGCTACAATTCGGCAATAACAGCATGCGGGAAG
GGTGGTAGCGGGCACGAGGCGGTTCGCATATTGAGAAAGATCCACAGATC
GGATTCTATTGTGCCTAATGTTCACTCCTACAACGCTGTCATGTTTGCTC
TATGGCGTTCGTCGATCCAATCGAAACCAAACGGTTGCATCCAGATGGAT
GCCACGAATGTTTCGAGAGAGCGCCAATAAATGGCACTGCGTCATGTTAT
CGGCGCTGCGAAAGAGGTGAGGAAGGTGCGGCAATACTCTCAAGCGGCGC
ACACTTCGGTCGGTTTTGCTAGTCTGTCAGAAGCCGGGAGAGGCGTCGCT
GCAAGCAAGACATGTGAAGCGCTAAGGGACGCTAGGTATAATCGAGACGG
CGAGGTTACTGGGCGCATAGGTGGATGGAGCGAGAATGTCAGGGCGGAGA
GGCAGCGTGGTGGGCGCAGGCCGAGGCGGGCTTCTCCTGAGATGTTTGCC
ATTACCAAGTCATACATGGGGCGATTAAAGCAGGCCGGAGCCTGTCAAAG
TTGGCACGAAGCGAGAGAAATCTTGAAGGAAGCCATCGCTCGTGATGATG
CAGCCTGTGTCACGAATATTTATGTATATTCGGAGGCCTTGAAAGTTGCA
GCGCAATGCGGCAAATGGAAGGAAGCGCTGGGAGTTGTGTCTGTCATGAG
GAAAAAGGGGGTGCAGCCAGACGTGGTAGTTTATAACTCAACAATCACAG
CTTGCGGAAACGGCAGGAATTGGAAGCAAGCGGTGCGTCTGTTGAGGGAG
ATGGAAGGGGACGGTGTCACTCCCGATGTCGTAAGCTACAATTCGGCCAT
CACAGCTTGTGGAAACAACGGGCAGTGGGAACAGGCTATCCGCATTTTGA
AGGATATGTCGAAGGCAGGCATCGTTCCTGACGTCAAGAGCTACAGCTCG
GCAATCACGGCGTGCGATAAAGGCAAGCAGTGGGGGGAAGCCATGAATCT
GTTGAGGGAGATGCAAGAGGCAGATGTAACCCCCGATGTTATCATCTACA
ATTCAGCCATCAGTTCGTGCGGAAACGAAGGGCAGTGGGAGGCAGCCATT
AATCTGCTGAGGGAGATGCAGAAAAATGATCTAACCCCGGATGTAGTGAG
CTATAACTCGACGATCACAGCGTGTGCAGAGGGTGGCCAATGGGAGGAGG
CCATGGCTTTGTTGAAGGATATGCAACGTGACGGTGTCGCGCCAGATGTC
GTGAGCTACAACTCGGTCATAACAGCGTGCGCAAGGGGCGGGCAACCGGT
ACAGGCTGTGGGTTTGATGGCAGAGATGCGGAGGGAAGGTGTCTCACCCG
ACGTGGTAAGCTACAATTCGGCCATAGCGGCATGTGGAAACGACAGACAA
TCTGCGCAAGCCCTGGATCTATTAAGGGAGATGGCGAGGGAAGGTATTAG
CCCCGATGTCGTGAGCTACAACTCGGCGATTAGAGCGTGTGGAAACTGTG
GGCAGTGGGAGCAGGCCATGGGTCTTTTGAGGGAGATGTACAGCAAGGGT
CTCACTGCTGATGTCGTCAGCTACAGCTCGGCGATTACGGCGTGCGGAAA
AGCCCGGCGATGGGAGGAGGCCATGGGTCTGTTGAGGGAGATGAGGAGGC
AGGGTGCAGTAAGTCCTAACAACGTGACCTATAGCGCTGCAATCACTTCA
TGCGGAGAGAGCGGAAAGTGGGAGCAGGCTGTGGGCTTATTGAGGGAGAT
GCAGAAGGAGGGTGCAGTGACCCCTGATAACGTAACCTATAGCTCAGTGA
TCACGGCATGTGGAGTAAGTGGAAAATGGGAGCAGGCTATAGACCTGTTG
AAGGAAATGCAGCAGAGGAGTGGTCTTGCCCCTAATGTCGTGACCTACAC
AGCGGTCATAACAGCATGTGGGGAAGGTGGAAGGTGGGAACATGCTGTGG
ATCTGTTGAGGAAGATGCAAAGCGAGGGTGTTGCTCCAAGTGTTGTGAGC
TACAATTCGGCAATAACAGCATGCGGGAAGGGTGGTAGCGGGCACGAGGC
GGTTCGCATATTGAGAAAGATCCACAGATCGGATTCTATTGTGCCTAATG
TTCACTCCTACAACGCTGTCATGTTTGCTCTATGGCGTTCGTCGATCCAA
TCGAAACCAAACGGTTGCATCCAGATGGATGCCACGAATGTTTCGAGAGA
GCGCCAATAA
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