prot_H-paniculata_contig19874.5075.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19874.5075.1
Unique Nameprot_H-paniculata_contig19874.5075.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
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BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Match: A0A6H5JE17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE17_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.380e-27
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0 
Query:    1 MCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASDVPVQAIAEAVRGRVAH 61
            M VRMRKPWHQWVEQLF DESVEAQCDALRGLVELPLP++ + S++PVQAIAEAVRGRV+H
Sbjct:   98 MSVRMRKPWHQWVEQLFCDESVEAQCDALRGLVELPLPFELRNSELPVQAIAEAVRGRVSH 158
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BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.250e-26
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 0 
Query:    1 MCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASDVPVQAIAEAVRGRVAH 61
            M VRMRKPWHQWVEQLF DESVEAQC+ALRGLVELPLP++ + S++PVQAIAEAVRGRV+H
Sbjct:  824 MSVRMRKPWHQWVEQLFCDESVEAQCEALRGLVELPLPFELRNSELPVQAIAEAVRGRVSH 884
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BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Match: A0A836CI26_9STRA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI26_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.620e-9
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0 
Query:    3 VRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASD---VP----VQAIAEAVRGRVAH 61
            + MRKP +QWVEQLF D  VEAQ DA+  L E PL    +      VP    V+A+AE +RGRVAH
Sbjct:  858 IMMRKPDYQWVEQLFQDNMVEAQLDAVNALAEPPLSAQAQIGGGIAVPAPLGVRALAECLRGRVAH 923
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE17_9PHAE6.380e-2783.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4X2_ECTSI2.250e-2681.97Transcription initiation factor TFIID subunit 2 n=... [more]
A0A836CI26_9STRA6.620e-951.52Transcription initiation factor TFIID subunit 2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19874contigH-paniculata_contig19874:1098..1280 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19874.5075.1mRNA_H-paniculata_contig19874.5075.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19874 1074..1280 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19874.5075.1 ID=prot_H-paniculata_contig19874.5075.1|Name=mRNA_H-paniculata_contig19874.5075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASDVPVQA
IAEAVRGRVAH
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