mRNA_H-paniculata_contig19874.5075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19874.5075.1
Unique NamemRNA_H-paniculata_contig19874.5075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Match: A0A6H5JE17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE17_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.570e-32
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 VDPSLEWIMCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASDVPVQAIAEAVRGRVAH 207
            VDP LEW+M VRMRKPWHQWVEQLF DESVEAQCDALRGLVELPLP++ + S++PVQAIAEAVRGRV+H
Sbjct:   90 VDPQLEWMMSVRMRKPWHQWVEQLFCDESVEAQCDALRGLVELPLPFELRNSELPVQAIAEAVRGRVSH 158
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BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.710e-31
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 VDPSLEWIMCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASDVPVQAIAEAVRGRVAH 207
            VDP LEW+M VRMRKPWHQWVEQLF DESVEAQC+ALRGLVELPLP++ + S++PVQAIAEAVRGRV+H
Sbjct:  816 VDPQLEWMMSVRMRKPWHQWVEQLFCDESVEAQCEALRGLVELPLPFELRNSELPVQAIAEAVRGRVSH 884
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BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Match: A0A836CI26_9STRA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI26_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.140e-12
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 VDPSLEWIMCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASD---VP----VQAIAEAVRGRVAH 207
            +DP   W+  + MRKP +QWVEQLF D  VEAQ DA+  L E PL    +      VP    V+A+AE +RGRVAH
Sbjct:  848 IDPQRRWLRRIMMRKPDYQWVEQLFQDNMVEAQLDAVNALAEPPLSAQAQIGGGIAVPAPLGVRALAECLRGRVAH 923
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19874.5075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE17_9PHAE4.570e-3282.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4X2_ECTSI1.710e-3181.16Transcription initiation factor TFIID subunit 2 n=... [more]
A0A836CI26_9STRA5.140e-1248.68Transcription initiation factor TFIID subunit 2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19874contigH-paniculata_contig19874:1074..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.7e-22
Seed eggNOG ortholog2880.D7G4X2
Preferred nameTAF2
KEGG koko:K03128
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000123,GO:0000228,GO:0000278,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022607,GO:0023051,GO:0023052,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033276,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044839,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
EggNOG OGsKOG1932@1,KOG1932@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01002,ko03021,ko03036
Exons1
Model size207
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.8705149-UTR-H-paniculata_contig19874:1073..10971622929500.8705149-UTR-H-paniculata_contig19874:1073..1097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19874 1074..1097 +
1691480888.314463-UTR-H-paniculata_contig19874:1073..10971691480888.314463-UTR-H-paniculata_contig19874:1073..1097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19874 1074..1097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929500.9040112-CDS-H-paniculata_contig19874:1097..12801622929500.9040112-CDS-H-paniculata_contig19874:1097..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19874 1098..1280 +
1691480888.3268933-CDS-H-paniculata_contig19874:1097..12801691480888.3268933-CDS-H-paniculata_contig19874:1097..1280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19874 1098..1280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19874.5075.1prot_H-paniculata_contig19874.5075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19874 1098..1280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19874.5075.1

>prot_H-paniculata_contig19874.5075.1 ID=prot_H-paniculata_contig19874.5075.1|Name=mRNA_H-paniculata_contig19874.5075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MCVRMRKPWHQWVEQLFSDESVEAQCDALRGLVELPLPYDTKASDVPVQA
IAEAVRGRVAH
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mRNA from alignment at H-paniculata_contig19874:1074..1280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19874.5075.1 ID=mRNA_H-paniculata_contig19874.5075.1|Name=mRNA_H-paniculata_contig19874.5075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig19874:1074..1280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGACCCTTCGTTGGAATGGATAATGTGCGTGAGGATGAGGAAGCCTTG
GCACCAGTGGGTGGAGCAGCTCTTCAGCGACGAGAGCGTCGAAGCACAGT
GTGACGCGCTTCGGGGACTAGTGGAGTTGCCGCTGCCGTACGATACCAAG
GCCTCGGATGTACCGGTGCAGGCTATAGCAGAGGCAGTCAGGGGAAGAGT
GGCGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19874:1074..1280+

>mRNA_H-paniculata_contig19874.5075.1 ID=mRNA_H-paniculata_contig19874.5075.1|Name=mRNA_H-paniculata_contig19874.5075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig19874:1074..1280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGTGAGGATGAGGAAGCCTTGGCACCAGTGGGTGGAGCAGCTCTT
CAGCGACGAGAGCGTCGAAGCACAGTGTGACGCGCTTCGGGGACTAGTGG
AGTTGCCGCTGCCGTACGATACCAAGGCCTCGGATGTACCGGTGCAGGCT
ATAGCAGAGGCAGTCAGGGGAAGAGTGGCGCACATGTGCGTGAGGATGAG
GAAGCCTTGGCACCAGTGGGTGGAGCAGCTCTTCAGCGACGAGAGCGTCG
AAGCACAGTGTGACGCGCTTCGGGGACTAGTGGAGTTGCCGCTGCCGTAC
GATACCAAGGCCTCGGATGTACCGGTGCAGGCTATAGCAGAGGCAGTCAG
GGGAAGAGTGGCGCAC
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