mRNA_H-paniculata_contig1985.5068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1985.5068.1
Unique NamemRNA_H-paniculata_contig1985.5068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1985.5068.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.350e-13
Identity = 59/127 (46.46%), Postives = 69/127 (54.33%), Query Frame = 2 
Query: 1457 RSRRGRRGVMILRRNRQACAALRSRDDLAELQFAECRVPEAVRSWAGRARAM-------------------------RSNRLSHDA---AASTWRSRTLQVALAQWVVAYLGDGESRRRRQAWRHAL 1753
            R+++ +R V +L+RN QA  ALRSRDDLA+L FAE RVP AV+ W  RARA                          R  RL  D+   A S WRSR L  ALA+WV   LGD E RRR  AWR AL
Sbjct:  411 RAQQMQRVVTMLKRNWQARMALRSRDDLADLHFAEWRVPNAVQEWRQRARASSNLALHARTRSPLPFACGGRHTESSRLKRLCRDSQNIATSKWRSRALPAALARWVGHSLGDKEKRRRLLAWRDAL 537
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BLAST of mRNA_H-paniculata_contig1985.5068.1 vs. uniprot
Match: D7G050_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G050_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.780e-13
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 2 
Query: 1457 RSRRGRRGVMILRRNRQACAALRSRDDLAELQFAECRVPEAVRSWAGRARAMRSNRLSHDAAASTWRSRTLQVALAQWVVAYLGDGESR 1723
            R+++ +R V +L+RN QA  ALRSRDDLA+L FAE RVP AV+ W  RARA R  R S + A S WRSR L  ALA+W    LGD E R
Sbjct:  412 RAQQMQRVVTMLKRNWQARMALRSRDDLADLHFAEWRVPYAVQEWRQRARASRLCRDSQNIATSKWRSRALPAALARWAGHSLGDKEKR 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1985.5068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMA0_9PHAE4.350e-1346.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G050_ECTSI5.780e-1356.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1985contigH-paniculata_contig1985:16025..19444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2335
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1985.5068.1prot_H-paniculata_contig1985.5068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1985 17341..18673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929499.7702215-UTR-H-paniculata_contig1985:16024..167451622929499.7702215-UTR-H-paniculata_contig1985:16024..16745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 16025..16745 -
1691480887.7582905-UTR-H-paniculata_contig1985:16024..167451691480887.7582905-UTR-H-paniculata_contig1985:16024..16745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 16025..16745 -
1622929499.7846014-UTR-H-paniculata_contig1985:16912..170291622929499.7846014-UTR-H-paniculata_contig1985:16912..17029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 16913..17029 -
1691480887.7674367-UTR-H-paniculata_contig1985:16912..170291691480887.7674367-UTR-H-paniculata_contig1985:16912..17029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 16913..17029 -
1622929499.8035328-UTR-H-paniculata_contig1985:17327..173401622929499.8035328-UTR-H-paniculata_contig1985:17327..17340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 17328..17340 -
1691480887.7764072-UTR-H-paniculata_contig1985:17327..173401691480887.7764072-UTR-H-paniculata_contig1985:17327..17340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 17328..17340 -
1622929499.8590088-UTR-H-paniculata_contig1985:18673..187271622929499.8590088-UTR-H-paniculata_contig1985:18673..18727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 18674..18727 -
1691480887.818228-UTR-H-paniculata_contig1985:18673..187271691480887.818228-UTR-H-paniculata_contig1985:18673..18727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 18674..18727 -
1622929499.8703394-UTR-H-paniculata_contig1985:18874..189611622929499.8703394-UTR-H-paniculata_contig1985:18874..18961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 18875..18961 -
1691480887.8275003-UTR-H-paniculata_contig1985:18874..189611691480887.8275003-UTR-H-paniculata_contig1985:18874..18961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 18875..18961 -
1622929499.8820443-UTR-H-paniculata_contig1985:19406..194441622929499.8820443-UTR-H-paniculata_contig1985:19406..19444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 19407..19444 -
1691480887.836708-UTR-H-paniculata_contig1985:19406..194441691480887.836708-UTR-H-paniculata_contig1985:19406..19444Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1985 19407..19444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929499.8220227-CDS-H-paniculata_contig1985:17340..173641622929499.8220227-CDS-H-paniculata_contig1985:17340..17364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 17341..17364 -
1691480887.7866232-CDS-H-paniculata_contig1985:17340..173641691480887.7866232-CDS-H-paniculata_contig1985:17340..17364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 17341..17364 -
1622929499.8396764-CDS-H-paniculata_contig1985:17392..186731622929499.8396764-CDS-H-paniculata_contig1985:17392..18673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 17393..18673 -
1691480887.80185-CDS-H-paniculata_contig1985:17392..186731691480887.80185-CDS-H-paniculata_contig1985:17392..18673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1985 17393..18673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1985.5068.1

>prot_H-paniculata_contig1985.5068.1 ID=prot_H-paniculata_contig1985.5068.1|Name=mRNA_H-paniculata_contig1985.5068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp
MEACMSGLDSLTSPAKVRCVSGSDCYGDRPADCAAPTTQVGHTRHRFYGA
ATLSPISATSCLDQPKRCGKCTTRTASSSIPLRCVDTTTISSTDAMLRVR
RPAGNDNLHEQRDVGIPLSPPQPPTPLSVPQAAAAPPSTSPPPPESVNTG
RNVGNVSRAAAEAWTAAEAWAFTIASATTTAATTGATVGTVAEGGAGGHT
KTTAKAAALELAKPREFFVISGGDQDNSRCNCEGVNCRLVNRPLLTPTAV
SPTTAGCAGNPAATVHNHDTTHFFATKGSPDSRVQTVVNVRSKPSPTRPP
PPPPPLRAHKNPQANRRKRSSFESVGYSRSVMEAGFVGQFVPLRGAAAVV
LQRIEHGEKVWRRHVQWTGMAMLRAHCLWVRELRSMEIVASNHHKCVCLK
RGFKGLKARVEWIRRRRRAVSTIAAAARDGAEGE*
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mRNA from alignment at H-paniculata_contig1985:16025..19444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1985.5068.1 ID=mRNA_H-paniculata_contig1985.5068.1|Name=mRNA_H-paniculata_contig1985.5068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3420bp|location=Sequence derived from alignment at H-paniculata_contig1985:16025..19444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCCCTGCTCGCATTCGCGAATATGGTTTCCAATGAGGTAAGCGTGAAC
CTAAACCCTAAAGCCTCGCCCAGAAAATTTTGAATTTTGTGCAATACTCT
GGAAACATTGCATACAAATTACTTACACTCTGCTGTAGGAGATGATAGAG
TACTACCGCACACTTCAGTAGTCTGTGTTGGCGGTATCGTTGGGGTGTTC
TTGCCTAATCGGAAATTCGTAATATTTGCCTCATCAATGATTGGCGTCCT
CATTTCCCTCTCAAGCGCATCCAGCTTTCGGTTGTAGTTTGCAGTATTCC
GGCATTCAGCCCTGAAGTAGGGGAATGATGTTCAACGAGACAAAGCGAGC
GTGTTAACAACGCCCTGTGAGTAGTCAAGATACTCTCGAACATCCCCTGA
GAGTCAAAATACAGAGCAAAGCACCAACCTCCTTGATTACCTTCTATTGC
CGCTGTCCTTGCACCTCACGTCTACAACGACAGTGCACTTGGCACTACTT
GAGCTGCGTGGAGGAAGGAGAAGCCTGCAGTAAGCGCCTGCATCTACAAC
CAGGTTAAGGTGGCTTTGAGGTGCGTAGCAACTCTCTTGTCCAAACTAAT
GGCGATCAGAAATCGTCTAGCGCACGGAGTCCGCCGTCTTGTGGTTATTA
CGCCGTGCTGGGGCTGCGATTCCTTCGTCTGCCCTTAATTCTCCCACCCT
GGTTGCCTTGCAAGCAGGTCGGAGCGAGAGTGAGGGGACGAAAGAGCTCC
TATCTGTCCGCAAAACGAGGGATGGAGGCTTGTATGTCCGGTCTTGACAG
TCTCACTTCACCAGCAAAGGTGCGTTGTGTTTCTGGGAGCGATTGCTATG
GTGACCGCCCCGCCGATTGTGCTGCTCCTACTACTCAAGTTGGACACACT
AGGCACCGGTTCTATGGTGCTGCGACTTTGAGCCCGATCTCCGCTACCAG
CTGCCTAGATCAGCCTAAAAGATGTGGAAAATGCACCACTAGAACCGCGT
CTTCGTCTATACCACTGCGGTGTGTCGATACCACGACTATATCGAGCACA
GACGCAATGTTGCGAGTGCGTCGTCCCGCTGGCAACGACAACCTTCACGA
GCAACGAGACGTGGGCATACCACTTTCTCCACCGCAACCACCAACGCCAC
TGTCGGTACCACAGGCGGCGGCAGCACCGCCCTCGACATCACCACCACCA
CCAGAATCTGTTAATACAGGGAGGAATGTAGGGAATGTCTCTCGAGCGGC
CGCTGAGGCTTGGACGGCAGCCGAAGCGTGGGCGTTTACGATAGCGTCGG
CCACTACGACAGCGGCAACAACGGGGGCAACAGTTGGTACGGTAGCCGAG
GGAGGAGCGGGTGGTCACACGAAGACAACGGCCAAAGCTGCGGCCTTGGA
GTTGGCGAAGCCTCGAGAGTTCTTTGTTATCTCGGGTGGAGATCAAGACA
ACAGCCGCTGCAATTGCGAGGGCGTAAACTGTCGTCTCGTCAACCGTCCT
CTGTTGACTCCGACGGCTGTGTCACCAACCACTGCGGGATGTGCGGGCAA
TCCCGCTGCTACTGTGCACAACCACGACACTACGCATTTCTTTGCGACAA
AGGGATCTCCTGACTCAAGAGTACAGACTGTTGTCAATGTCCGGTCAAAG
CCTTCCCCCACACGCCCGCCGCCGCCGCCGCCGCCGTTACGCGCCCATAA
GAACCCGCAAGCGAACCGGCGGAAGAGGTCATCTTTTGAGTCCGTGGGAT
ACTCCCGCTCCGTTATGGAAGCGGGATTTGTAGGCCAGTTTGTACCCTTA
CGAGGTGCGGCGGCAGTTGTTCTGCAAAGGATCGAGCATGGAGAGAAAGT
GTGGAGAAGACATGTGCAGTGGACGGGTATGGCCATGTTGAGAGCTCACT
GCCTGTGGGTGCGCGAGCTTAGGTCGATGGAAATCGTTGCTAGTAATCAT
CACAAGTGTGTGTGTTTGAAACGGGGCTTCAAAGGCTTGAAGGCGAGGGT
GGAGTGGATAAGAAGGAGGCGTAGGGCTGTGTCTACCATCGCCGCTGCCG
CTGCAGCAGTGGCTGACACATTTTATCGAGCGCGACGGGGCCGAAGGGGA
GTGATGATTCTGAGAAGGTACATTTTTTATGATGCAGCACATATTTCGTC
GTCAATCCCGTCAAACATGCAGATTCTATAGTATTTTATGTATTAGGATG
TACTACGTGTCCACAGATACCCGCTGACACTGCGGCCCAATGCCGTCCTT
TTCTTCAATTCAAGTACGATGTGGTTTCATACAAAGTGTTCTTCCGTGTT
ACAGAAGACGAGGTGCTTTGCGAGCGACTCCATCTAGCGCCCAGGCTTAT
CTTCCACAAGTTAATGACATCTAATCCGTGGCTTCGAAACGCGTCTGCCT
CTCCGTTCGGGTCAGGAACCGCCAGGCATGCGCGGCTCTCCGGTCCCGGG
ATGATCTGGCTGAATTGCAATTTGCCGAGTGTCGCGTACCTGAGGCCGTA
CGGTCTTGGGCCGGAAGGGCTCGAGCGATGAGGTGAGAGCAGGCAGAGAT
ACCGATAGCTTTTATTTTAGCACGTTTTGGATGAAAAAAAACAACTCTGG
ACCTGTGAAGGTCCGCATGGTCGATGGCTAATCTGCCAAAACTTGACAAT
TCCCGCGCTGCCCTCCTATCCTTCTCCACTTTATTCGCCGTTGTTGGAGG
TCCAACCGCTTGTCCCACGATGCGGCCGCGAGCACGTGGAGGTCAAGGAC
TCTTCAAGTTGCCTTAGCGCAATGGGTGGTGGCATATTTGGGAGATGGCG
AGAGCCGTCGCCGCCGCCAAGCGTGGCGACACGCGCTGCTTCAGGCACCA
CTGTATGCGGATGAAGACGAGGTAAAACGGGGGGAGGATGGCCACCGACT
GGATGAGATCCATACTTCGGGGAGAAGTGATAACTGTGGTAACACCAGGA
GCATTCTATGTGACGAAAATGTGCGCAAGGTTGTTGATGAGAGTATTTCA
TCACTTGAAACGCAGTCGCCGTCGCCACCGCTGCCGCCTCCCCCGGTACA
TGAAACTACAATCGGAATGACGAGAGGTGTCATCTCGACAGCATCGGCAG
AAGTTCTGGATTTAGGTTTACAAGGCGGTGCTACTGCCGATGGCCGCGAT
GAAGAGGGCAAGAATGAATGTGGGACAAGTGAAGTAGGGATGGATTATTG
TGAGATCACCAAGACTGTGGATCTCGTGATGAGGCCATCGGCCGTACCAT
GTAAAGGAGTGCGCAGAGAATACGGGGAGACAGCCGGGGCGATCGTAAGG
TATCGGCAAGTGGATGGTGCGAACCAACAATCGGTGTTGGATTGGGTCGG
GCCCAGAGCTGCAGATGGGCAAGGAGAACAAAATTCAACCAAGGCGGCAG
GGTGCTGCGGGGTAAAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1985:16025..19444-

>mRNA_H-paniculata_contig1985.5068.1 ID=mRNA_H-paniculata_contig1985.5068.1|Name=mRNA_H-paniculata_contig1985.5068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig1985:16025..19444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCTTGTATGTCCGGTCTTGACAGTCTCACTTCACCAGCAAAGGT
GCGTTGTGTTTCTGGGAGCGATTGCTATGGTGACCGCCCCGCCGATTGTG
CTGCTCCTACTACTCAAGTTGGACACACTAGGCACCGGTTCTATGGTGCT
GCGACTTTGAGCCCGATCTCCGCTACCAGCTGCCTAGATCAGCCTAAAAG
ATGTGGAAAATGCACCACTAGAACCGCGTCTTCGTCTATACCACTGCGGT
GTGTCGATACCACGACTATATCGAGCACAGACGCAATGTTGCGAGTGCGT
CGTCCCGCTGGCAACGACAACCTTCACGAGCAACGAGACGTGGGCATACC
ACTTTCTCCACCGCAACCACCAACGCCACTGTCGGTACCACAGGCGGCGG
CAGCACCGCCCTCGACATCACCACCACCACCAGAATCTGTTAATACAGGG
AGGAATGTAGGGAATGTCTCTCGAGCGGCCGCTGAGGCTTGGACGGCAGC
CGAAGCGTGGGCGTTTACGATAGCGTCGGCCACTACGACAGCGGCAACAA
CGGGGGCAACAGTTGGTACGGTAGCCGAGGGAGGAGCGGGTGGTCACACG
AAGACAACGGCCAAAGCTGCGGCCTTGGAGTTGGCGAAGCCTCGAGAGTT
CTTTGTTATCTCGGGTGGAGATCAAGACAACAGCCGCTGCAATTGCGAGG
GCGTAAACTGTCGTCTCGTCAACCGTCCTCTGTTGACTCCGACGGCTGTG
TCACCAACCACTGCGGGATGTGCGGGCAATCCCGCTGCTACTGTGCACAA
CCACGACACTACGCATTTCTTTGCGACAAAGGGATCTCCTGACTCAAGAG
TACAGACTGTTGTCAATGTCCGGTCAAAGCCTTCCCCCACACGCCCGCCG
CCGCCGCCGCCGCCGTTACGCGCCCATAAGAACCCGCAAGCGAACCGGCG
GAAGAGGTCATCTTTTGAGTCCGTGGGATACTCCCGCTCCGTTATGGAAG
CGGGATTTGTAGGCCAGTTTGTACCCTTACGAGGTGCGGCGGCAGTTGTT
CTGCAAAGGATCGAGCATGGAGAGAAAGTGTGGAGAAGACATGTGCAGTG
GACGGGTATGGCCATGTTGAGAGCTCACTGCCTGTGGGTGCGCGAGCTTA
GGTCGATGGAAATCGTTGCTAGTAATCATCACAAGTGTGTGTGTTTGAAA
CGGGGCTTCAAAGGCTTGAAGGCGAGGGTGGAGTGGATAAGAAGGAGGCG
TAGGGCTGTGTCTACCATCGCCGCTGCCGCTATGGAGGCTTGTATGTCCG
GTCTTGACAGTCTCACTTCACCAGCAAAGGTGCGTTGTGTTTCTGGGAGC
GATTGCTATGGTGACCGCCCCGCCGATTGTGCTGCTCCTACTACTCAAGT
TGGACACACTAGGCACCGGTTCTATGGTGCTGCGACTTTGAGCCCGATCT
CCGCTACCAGCTGCCTAGATCAGCCTAAAAGATGTGGAAAATGCACCACT
AGAACCGCGTCTTCGTCTATACCACTGCGGTGTGTCGATACCACGACTAT
ATCGAGCACAGACGCAATGTTGCGAGTGCGTCGTCCCGCTGGCAACGACA
ACCTTCACGAGCAACGAGACGTGGGCATACCACTTTCTCCACCGCAACCA
CCAACGCCACTGTCGGTACCACAGGCGGCGGCAGCACCGCCCTCGACATC
ACCACCACCACCAGAATCTGTTAATACAGGGAGGAATGTAGGGAATGTCT
CTCGAGCGGCCGCTGAGGCTTGGACGGCAGCCGAAGCGTGGGCGTTTACG
ATAGCGTCGGCCACTACGACAGCGGCAACAACGGGGGCAACAGTTGGTAC
GGTAGCCGAGGGAGGAGCGGGTGGTCACACGAAGACAACGGCCAAAGCTG
CGGCCTTGGAGTTGGCGAAGCCTCGAGAGTTCTTTGTTATCTCGGGTGGA
GATCAAGACAACAGCCGCTGCAATTGCGAGGGCGTAAACTGTCGTCTCGT
CAACCGTCCTCTGTTGACTCCGACGGCTGTGTCACCAACCACTGCGGGAT
GTGCGGGCAATCCCGCTGCTACTGTGCACAACCACGACACTACGCATTTC
TTTGCGACAAAGGGATCTCCTGACTCAAGAGTACAGACTGTTGTCAATGT
CCGGTCAAAGCCTTCCCCCACACGCCCGCCGCCGCCGCCGCCGCCGTTAC
GCGCCCATAAGAACCCGCAAGCGAACCGGCGGAAGAGGTCATCTTTTGAG
TCCGTGGGATACTCCCGCTCCGTTATGGAAGCGGGATTTGTAGGCCAGTT
TGTACCCTTACGAGGTGCGGCGGCAGTTGTTCTGCAAAGGATCGAGCATG
GAGAGAAAGTGTGGAGAAGACATGTGCAGTGGACGGGTATGGCCATGTTG
AGAGCTCACTGCCTGTGGGTGCGCGAGCTTAGGTCGATGGAAATCGTTGC
TAGTAATCATCACAAGTGTGTGTGTTTGAAACGGGGCTTCAAAGGCTTGA
AGGCGAGGGTGGAGTGGATAAGAAGGAGGCGTAGGGCTGTGTCTACCATC
GCCGCTGCCGCTCGCGACGGGGCCGAAGGGGAGTGACGCGACGGGGCCGA
AGGGGAGTGA
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