mRNA_H-paniculata_contig19845.5065.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19845.5065.1
Unique NamemRNA_H-paniculata_contig19845.5065.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19845.5065.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.360e-19
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   13 WGPGGRILWKGLCTSFFMLTRPCEMFAESGNLVHPTYCLRRSGVAFYQGQAQLRRKAWGSADRVEVRFRRAKGDQFRSGAVVTCVRTG 276
            WG  GR+L+  L  SFF L R CEMFA S   +   + LRR  VAF+ G  QL  +  G ADRVEVRFR +KGDQFR GAV T  R G
Sbjct:  178 WGTRGRVLFLALSASFFFLMRACEMFAVSSLAMDSCHGLRRGDVAFFLGSRQLPPERRGEADRVEVRFRSSKGDQFRKGAVCTRARPG 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19845.5065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3G1_9PHAE1.360e-1954.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19845contigH-paniculata_contig19845:4220..4495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929499.6533096-CDS-H-paniculata_contig19845:4219..44951622929499.6533096-CDS-H-paniculata_contig19845:4219..4495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19845 4220..4495 -
1691480887.710341-CDS-H-paniculata_contig19845:4219..44951691480887.710341-CDS-H-paniculata_contig19845:4219..4495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19845 4220..4495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19845.5065.1prot_H-paniculata_contig19845.5065.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19845 4220..4495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19845.5065.1

>prot_H-paniculata_contig19845.5065.1 ID=prot_H-paniculata_contig19845.5065.1|Name=mRNA_H-paniculata_contig19845.5065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
LSFGWGPGGRILWKGLCTSFFMLTRPCEMFAESGNLVHPTYCLRRSGVAF
YQGQAQLRRKAWGSADRVEVRFRRAKGDQFRSGAVVTCVRTG
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mRNA from alignment at H-paniculata_contig19845:4220..4495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19845.5065.1 ID=mRNA_H-paniculata_contig19845.5065.1|Name=mRNA_H-paniculata_contig19845.5065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig19845:4220..4495- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTCGTTCGGGTGGGGCCCAGGTGGTCGAATACTGTGGAAGGGATTGTG
TACGTCGTTTTTCATGCTAACGAGGCCTTGCGAAATGTTCGCGGAGTCTG
GAAATCTAGTCCACCCGACGTATTGTCTTCGTAGGAGTGGCGTCGCCTTT
TACCAGGGGCAAGCGCAGCTGAGAAGAAAAGCATGGGGTAGTGCAGATAG
GGTGGAGGTTCGCTTTCGACGGGCCAAAGGTGATCAATTCCGGAGTGGGG
CGGTAGTGACTTGCGTTCGTACGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig19845:4220..4495-

>mRNA_H-paniculata_contig19845.5065.1 ID=mRNA_H-paniculata_contig19845.5065.1|Name=mRNA_H-paniculata_contig19845.5065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig19845:4220..4495- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTCGTTCGGGTGGGGCCCAGGTGGTCGAATACTGTGGAAGGGATTGTG
TACGTCGTTTTTCATGCTAACGAGGCCTTGCGAAATGTTCGCGGAGTCTG
GAAATCTAGTCCACCCGACGTATTGTCTTCGTAGGAGTGGCGTCGCCTTT
TACCAGGGGCAAGCGCAGCTGAGAAGAAAAGCATGGGGTAGTGCAGATAG
GGTGGAGGTTCGCTTTCGACGGGCCAAAGGTGATCAATTCCGGAGTGGGG
CGGTAGTGACTTGCGTTCGTACGGGGCTGTCGTTCGGGTGGGGCCCAGGT
GGTCGAATACTGTGGAAGGGATTGTGTACGTCGTTTTTCATGCTAACGAG
GCCTTGCGAAATGTTCGCGGAGTCTGGAAATCTAGTCCACCCGACGTATT
GTCTTCGTAGGAGTGGCGTCGCCTTTTACCAGGGGCAAGCGCAGCTGAGA
AGAAAAGCATGGGGTAGTGCAGATAGGGTGGAGGTTCGCTTTCGACGGGC
CAAAGGTGATCAATTCCGGAGTGGGGCGGTAGTGACTTGCGTTCGTACGG
GG
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