mRNA_H-paniculata_contig19820.5057.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19820.5057.1
Unique NamemRNA_H-paniculata_contig19820.5057.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19820.5057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19820contigH-paniculata_contig19820:841..2314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1217
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19820.5057.1prot_H-paniculata_contig19820.5057.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19820 1661..2314 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.8634424-UTR-H-paniculata_contig19820:840..12651622929498.8634424-UTR-H-paniculata_contig19820:840..1265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19820 841..1265 +
1691480887.3824027-UTR-H-paniculata_contig19820:840..12651691480887.3824027-UTR-H-paniculata_contig19820:840..1265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19820 841..1265 +
1622929498.880646-UTR-H-paniculata_contig19820:1524..16601622929498.880646-UTR-H-paniculata_contig19820:1524..1660Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19820 1525..1660 +
1691480887.3911626-UTR-H-paniculata_contig19820:1524..16601691480887.3911626-UTR-H-paniculata_contig19820:1524..1660Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19820 1525..1660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.89598-CDS-H-paniculata_contig19820:1660..23141622929498.89598-CDS-H-paniculata_contig19820:1660..2314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19820 1661..2314 +
1691480887.4016054-CDS-H-paniculata_contig19820:1660..23141691480887.4016054-CDS-H-paniculata_contig19820:1660..2314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19820 1661..2314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19820.5057.1

>prot_H-paniculata_contig19820.5057.1 ID=prot_H-paniculata_contig19820.5057.1|Name=mRNA_H-paniculata_contig19820.5057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MEPPPGDDYDLDQLDWSSGTADTGHGTARDSLPKALPFDHGVASPATPKI
VAVGSLTAGSPVATVQTSAMGNAIEFSNIGCGVGMSQELLPFANNGSIMM
TPGETTPPPASTTAATPADSGDCTHSSKSESPSLDRAVVTAEHVASSAVA
SNGQPRPTCRYGRGCSHTSTLHRARYSHPCDVTWGGSSSAIAGRPSQSTG
SGHIAHNRTSVIMGGGGA
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mRNA from alignment at H-paniculata_contig19820:841..2314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19820.5057.1 ID=mRNA_H-paniculata_contig19820.5057.1|Name=mRNA_H-paniculata_contig19820.5057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1474bp|location=Sequence derived from alignment at H-paniculata_contig19820:841..2314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCGGTGAAGACTCGGGTATTGAACCCTGGTTAGATAGAGCACTCTCTT
TTTCGAACCATAGGTACGTTGGGTGCAGCTGGCTTGGGATGGGAAAAAAA
GCGGAAGAAAGCAAGCGCTCCAAAGTTCTTCGTTTTCGTTGGAGCACTCT
TCTACTGATTGTTTCTGTACCTGAAATCTCTGGGCTGACTCGCACTTCAT
AAGGGGCCGCCGACCCGGAAAAGGGCAGACCCCTAGCTTGTTCATAACGG
GTTGCTACTACCTGTGGAACGTTCCCCTTGTACGGGTGTGTTCAGGCCAA
CCCAAAATCTGGAAGCACGCTTTGGGAAAGACGGCGCTCCTCCTCTCTAA
ACGTGTTGTACACGGTGACACGACGTTGGTCGCTGGTCCGGGAGCGGTTA
CCTGTTCCACAGTCAGAAGCAGCAGGTGTGTTCAACAACAGGGCCTAGGC
TCGATCAAGGTCAGAACTGTTCCCATCAACGACAGAACGAAGGTCTACCA
TCTCAGTACATCAAACAGCGTATATAACTCTGGCGCAGGGCTGCACGCAG
ACACAGTATATACTCTATCAGTCACTACAGACAATAGTTATCCACAGTCA
GTACTATCACCTTATCATGTTGACATAGGCTAACTTTCTTCTTACTCGTA
TATCGCTCGGGCTTTTTCTACGCGGCGAAACTAGAGAGCTCTCGGGGCAA
ACGTGACGTCAAATAGATCAAGAGACTCTGTATCACGGCAACATCTCCAG
TAGCAGACAAGAGAGTATCAAAACTCGGCAGGCAGCCTTGACCGTCATCT
ACCTATAATACATCTCCGTAATGGAGCCTCCACCCGGAGACGACTACGAT
CTGGATCAGCTAGACTGGTCCAGTGGAACAGCGGACACAGGGCACGGGAC
AGCACGCGATTCCCTGCCAAAAGCACTGCCCTTCGACCACGGCGTAGCCT
CACCCGCCACTCCCAAAATAGTAGCTGTGGGTTCGCTGACCGCGGGCAGC
CCAGTCGCCACGGTCCAAACATCAGCAATGGGAAACGCAATAGAATTCTC
AAACATCGGTTGTGGGGTTGGGATGTCTCAGGAGTTGCTTCCATTTGCGA
ACAACGGGTCGATCATGATGACGCCAGGCGAAACAACACCACCACCTGCC
AGTACTACTGCTGCTACACCTGCAGACAGCGGTGACTGCACCCATAGCAG
CAAGAGCGAGTCGCCGTCACTCGACCGCGCTGTTGTTACTGCCGAGCACG
TTGCTTCGAGTGCGGTCGCAAGCAACGGCCAACCTAGACCAACCTGCAGG
TACGGGCGAGGCTGCTCGCATACGAGCACGCTCCATCGGGCGAGGTATTC
TCACCCCTGTGATGTTACCTGGGGCGGCAGCAGCAGCGCTATCGCCGGTC
GACCGTCCCAGTCCACCGGCTCTGGGCACATCGCCCATAACAGAACAAGT
GTTATAATGGGGGGGGGCGGCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig19820:841..2314+

>mRNA_H-paniculata_contig19820.5057.1 ID=mRNA_H-paniculata_contig19820.5057.1|Name=mRNA_H-paniculata_contig19820.5057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig19820:841..2314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCCTCCACCCGGAGACGACTACGATCTGGATCAGCTAGACTGGTC
CAGTGGAACAGCGGACACAGGGCACGGGACAGCACGCGATTCCCTGCCAA
AAGCACTGCCCTTCGACCACGGCGTAGCCTCACCCGCCACTCCCAAAATA
GTAGCTGTGGGTTCGCTGACCGCGGGCAGCCCAGTCGCCACGGTCCAAAC
ATCAGCAATGGGAAACGCAATAGAATTCTCAAACATCGGTTGTGGGGTTG
GGATGTCTCAGGAGTTGCTTCCATTTGCGAACAACGGGTCGATCATGATG
ACGCCAGGCGAAACAACACCACCACCTGCCAGTACTACTGCTGCTACACC
TGCAGACAGCGGTGACTGCACCCATAGCAGCAAGAGCGAGTCGCCGTCAC
TCGACCGCGCTGTTGTTACTGCCGAGCACGTTGCTTCGAGTGCGGTCGCA
AGCAACGGCCAACCTAGACCAACCTGCAGGTACGGGCGAGGCTGCTCGCA
TACGAGCACGCTCCATCGGGCGAGGTATTCTCACCCCTGTGATGTTACCT
GGGGCGGCAGCAGCAGCGCTATCGCCGGTCGACCGTCCCAGTCCACCGGC
TCTGGGCACATCGCCCATAACAGAACAAGTGTTATAATGGGGGGGGGCGG
CGCAATGGAGCCTCCACCCGGAGACGACTACGATCTGGATCAGCTAGACT
GGTCCAGTGGAACAGCGGACACAGGGCACGGGACAGCACGCGATTCCCTG
CCAAAAGCACTGCCCTTCGACCACGGCGTAGCCTCACCCGCCACTCCCAA
AATAGTAGCTGTGGGTTCGCTGACCGCGGGCAGCCCAGTCGCCACGGTCC
AAACATCAGCAATGGGAAACGCAATAGAATTCTCAAACATCGGTTGTGGG
GTTGGGATGTCTCAGGAGTTGCTTCCATTTGCGAACAACGGGTCGATCAT
GATGACGCCAGGCGAAACAACACCACCACCTGCCAGTACTACTGCTGCTA
CACCTGCAGACAGCGGTGACTGCACCCATAGCAGCAAGAGCGAGTCGCCG
TCACTCGACCGCGCTGTTGTTACTGCCGAGCACGTTGCTTCGAGTGCGGT
CGCAAGCAACGGCCAACCTAGACCAACCTGCAGGTACGGGCGAGGCTGCT
CGCATACGAGCACGCTCCATCGGGCGAGGTATTCTCACCCCTGTGATGTT
ACCTGGGGCGGCAGCAGCAGCGCTATCGCCGGTCGACCGTCCCAGTCCAC
CGGCTCTGGGCACATCGCCCATAACAGAACAAGTGTTATAATGGGGGGGG
GCGGCGCA
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