mRNA_H-paniculata_contig19804.5051.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19804.5051.1
Unique NamemRNA_H-paniculata_contig19804.5051.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19804.5051.1 vs. uniprot
Match: A0A6H5K023_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K023_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 5.780e-54
Identity = 86/162 (53.09%), Postives = 108/162 (66.67%), Query Frame = 1 
Query:    1 GAALFGAGTKPVISRKARLTYGTNVARRYIEDNAAHRQRKSAVYLTGSVLYLEAFKCYVERGDDLPIGTDREHIFTPLTDDQQKVAFDILVTKSPAADVRYLKDANSKKMVNTLTTVEVPMDMNVPFESRGVSMRLSFGGIELGIKCKRNSDGEEVTATTIF 486
            GAA +GA    ++SRKARLTYGT    RY E+N  H  R++     G  LYL+ F CYVE+G DLP+GTD+EH F P+TD+Q +V+FD+ ++  P AD+ YLKD    K ++ L TV  P+D NVP   RGVSM+LSFGG ELGIKC R SD  EV   T F
Sbjct:   80 GAARYGASDSTIVSRKARLTYGTKYVTRYDENNKKHTDRQAHARFVGDGLYLDKFSCYVEKGTDLPVGTDKEHTFHPVTDEQDQVSFDVCISLKPEADIEYLKDNGVSKKLSLLKTVSAPIDRNVPMSKRGVSMKLSFGGTELGIKCTRCSDSHEVVTQTKF 241
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BLAST of mRNA_H-paniculata_contig19804.5051.1 vs. uniprot
Match: D7G266_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.950e-48
Identity = 84/162 (51.85%), Postives = 106/162 (65.43%), Query Frame = 1 
Query:    1 GAALFGAGTKPVISRKARLTYGTNVARRYIEDNAAHRQRKSAVYLTGSVLYLEAFKCYVERGDDLPIGTDREHIFTPLTDDQQKVAFDILVTKSPAADVRYLKDANSKKMVNTLTTVEVPMDMNVPFESRGVSMRLSFGGIELGIKCKRNSDGEEVTATTIF 486
            GAA +G     ++SRKARLTYGT     Y E N  H +R       G  LYL+ F CYVE+G DLP+GTD+E  F PLT++Q  V+FD+ ++  P A ++YLKD    K ++ L TV  PMDM+VP   RGVSM+LSFGG ELGIKC R SDG EV  +T+F
Sbjct:  441 GAARYGTSDSTIVSRKARLTYGTKTMTDYDEHNPEHTKRMKHARYIGGALYLDTFSCYVEKGIDLPVGTDKEETFYPLTNEQTAVSFDVCISLKPKAGIKYLKDNGVDKQLSLLKTVSAPMDMSVPMRKRGVSMQLSFGGTELGIKCTRCSDGHEVITSTVF 602
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BLAST of mRNA_H-paniculata_contig19804.5051.1 vs. uniprot
Match: A0A2Z6R7H6_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R7H6_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 9.200e-5
Identity = 39/143 (27.27%), Postives = 72/143 (50.35%), Query Frame = 1 
Query:    1 GAALFGAGTKPVISRKARLTYGTNVARRYIEDNAAHRQRKSAVYLTGSVLYLEAFKCYVERGDDLPIGTDREHIFTPLTDDQQKVAFDILVTKSPAADVRYLKDANSKKMVNTLTTVEVPMDMNVPFESRGVSMRLSFGGIEL 429
            GA  FG     V +R  + TYGT+VA+++++ +  +R+RK      G ++    F    +RGD + +       + P    Q+++  DI VTK    D  Y  +++ + + +    V++P   N   E+RG  + L+FG +E+
Sbjct:  402 GAVQFGLEKNIVKTRVLKWTYGTDVAKKWVQGDPIYRRRKD-----GRII---KFSRLAKRGDQVAVDEKIVRTYHPPNTTQRQLGLDIYVTKKE--DATYCDESDVELLDSWC--VDIP---NASKENRGFEITLTFGKVEI 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19804.5051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K023_9PHAE5.780e-5453.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G266_ECTSI2.950e-4851.85Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A2Z6R7H6_9GLOM9.200e-527.27Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19804contigH-paniculata_contig19804:4017..4502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHeat shock protein 70
Ec32 orthologEc-16_002310.1
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.00839-CDS-H-paniculata_contig19804:4016..45021622929498.00839-CDS-H-paniculata_contig19804:4016..4502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19804 4017..4502 -
1691480886.9853802-CDS-H-paniculata_contig19804:4016..45021691480886.9853802-CDS-H-paniculata_contig19804:4016..4502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19804 4017..4502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19804.5051.1prot_H-paniculata_contig19804.5051.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19804 4017..4502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19804.5051.1

>prot_H-paniculata_contig19804.5051.1 ID=prot_H-paniculata_contig19804.5051.1|Name=mRNA_H-paniculata_contig19804.5051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
GAALFGAGTKPVISRKARLTYGTNVARRYIEDNAAHRQRKSAVYLTGSVL
YLEAFKCYVERGDDLPIGTDREHIFTPLTDDQQKVAFDILVTKSPAADVR
YLKDANSKKMVNTLTTVEVPMDMNVPFESRGVSMRLSFGGIELGIKCKRN
SDGEEVTATTIF
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mRNA from alignment at H-paniculata_contig19804:4017..4502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19804.5051.1 ID=mRNA_H-paniculata_contig19804.5051.1|Name=mRNA_H-paniculata_contig19804.5051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig19804:4017..4502- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCAGCCCTCTTCGGAGCCGGGACTAAGCCCGTCATTTCCCGCAAGGC
TCGGCTGACGTACGGGACCAACGTTGCTCGTCGCTACATCGAAGACAATG
CGGCTCACCGCCAGCGCAAAAGCGCAGTATATTTGACGGGCAGCGTGCTC
TACTTAGAGGCTTTCAAATGCTACGTCGAAAGGGGAGATGACCTTCCCAT
CGGCACAGACCGGGAGCACATTTTCACACCGTTGACCGACGATCAACAGA
AAGTAGCCTTCGACATCCTTGTCACCAAGTCGCCTGCTGCAGATGTTCGC
TACCTGAAGGATGCGAACAGTAAGAAGATGGTGAACACTCTCACTACCGT
CGAGGTGCCCATGGACATGAATGTCCCCTTTGAAAGCCGTGGCGTGTCCA
TGCGCCTGTCGTTTGGAGGTATCGAGCTTGGCATCAAGTGCAAGCGTAAC
TCTGACGGGGAAGAAGTAACCGCGACCACGATTTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig19804:4017..4502-

>mRNA_H-paniculata_contig19804.5051.1 ID=mRNA_H-paniculata_contig19804.5051.1|Name=mRNA_H-paniculata_contig19804.5051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig19804:4017..4502- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCAGCCCTCTTCGGAGCCGGGACTAAGCCCGTCATTTCCCGCAAGGC
TCGGCTGACGTACGGGACCAACGTTGCTCGTCGCTACATCGAAGACAATG
CGGCTCACCGCCAGCGCAAAAGCGCAGTATATTTGACGGGCAGCGTGCTC
TACTTAGAGGCTTTCAAATGCTACGTCGAAAGGGGAGATGACCTTCCCAT
CGGCACAGACCGGGAGCACATTTTCACACCGTTGACCGACGATCAACAGA
AAGTAGCCTTCGACATCCTTGTCACCAAGTCGCCTGCTGCAGATGTTCGC
TACCTGAAGGATGCGAACAGTAAGAAGATGGTGAACACTCTCACTACCGT
CGAGGTGCCCATGGACATGAATGTCCCCTTTGAAAGCCGTGGCGTGTCCA
TGCGCCTGTCGTTTGGAGGTATCGAGCTTGGCATCAAGTGCAAGCGTAAC
TCTGACGGGGAAGAAGTAACCGCGACCACGATTTTCGGGGCAGCCCTCTT
CGGAGCCGGGACTAAGCCCGTCATTTCCCGCAAGGCTCGGCTGACGTACG
GGACCAACGTTGCTCGTCGCTACATCGAAGACAATGCGGCTCACCGCCAG
CGCAAAAGCGCAGTATATTTGACGGGCAGCGTGCTCTACTTAGAGGCTTT
CAAATGCTACGTCGAAAGGGGAGATGACCTTCCCATCGGCACAGACCGGG
AGCACATTTTCACACCGTTGACCGACGATCAACAGAAAGTAGCCTTCGAC
ATCCTTGTCACCAAGTCGCCTGCTGCAGATGTTCGCTACCTGAAGGATGC
GAACAGTAAGAAGATGGTGAACACTCTCACTACCGTCGAGGTGCCCATGG
ACATGAATGTCCCCTTTGAAAGCCGTGGCGTGTCCATGCGCCTGTCGTTT
GGAGGTATCGAGCTTGGCATCAAGTGCAAGCGTAACTCTGACGGGGAAGA
AGTAACCGCGACCACGATTTTC
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