mRNA_H-paniculata_contig19802.5050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 112 bits (281), Expect = 1.300e-28 Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
++ + + AYTPQQNGV ER R++ EMAR+ +I ++ +++WAEAV +AVY LNR PT+ T E W G+ P +DH R+FGC YV ++R KL++K G+ L Y
Sbjct: 78 LEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGY 188
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP) HSP 1 Score: 116 bits (291), Expect = 4.880e-28 Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I+ +F+ +YTPQQNGV+ER R++ EM+R + + +++WAEAV ++VY LNR TR NG T YE W+G P +DHLR+FGC Y +R KLD KA G+ L Y
Sbjct: 430 IEHQFTVSYTPQQNGVSERKNRTVMEMSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGY 540
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 114 bits (285), Expect = 3.130e-27 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I+ + + YTPQQNGV+ER R++ EMAR + + + +WAEAV ++VY LN PT+ G T +E WHG TP ++HL+VFGC Y + +R KLD K+ G+ L Y
Sbjct: 543 IQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGY 653
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A1U8L3M3_GOSHI (LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like n=3 Tax=Gossypium TaxID=3633 RepID=A0A1U8L3M3_GOSHI) HSP 1 Score: 114 bits (284), Expect = 4.370e-27 Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I+ + + YTPQQNGV ER R++ +MAR + A M +WAEAV +AVY LNR PT G T +E W G+ P + HL+VFGC YV+ E+R KLD ++ GV + Y
Sbjct: 1946 IQHQLTTVYTPQQNGVCERKNRTVLDMARCLLFEAKMPNAFWAEAVNTAVYLLNRLPTNAVKGKTPFEAWFGQKPSVSHLKVFGCLCYVLVPKERRTKLDRRSMPGVFVGY 2056
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A537QRN8_9PROT (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QRN8_9PROT) HSP 1 Score: 113 bits (283), Expect = 5.820e-27 Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I E SA YT QNGV+ER RSI E AR + A++G R+WAEAV +AVY LNR+PTR G T YE W+G P L HLR FGC A+V E+R+KL K+ V+L Y
Sbjct: 616 ISFEPSAPYTQNQNGVSERKIRSIVEKARCMLHDASLGARFWAEAVSTAVYLLNRSPTRALEGQTPYEAWYGSRPSLHHLRRFGCNAFVHVPPEKRKKLQAKSRCCVMLGY 726
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A6P5MS85_ARADU (DNA-directed RNA polymerase subunit n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5MS85_ARADU) HSP 1 Score: 113 bits (283), Expect = 5.970e-27 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
IKQ+F+ YTPQQNGV+ER RSI EM R + + + +WAEAV +AV+ LNR PT+ N TS+E WHG PK+ LR FGC Y + S R KLD + AG+ + Y
Sbjct: 1038 IKQQFTVPYTPQQNGVSERKNRSIVEMGRCMLQGKQLPKSFWAEAVNTAVFLLNRLPTKALNKQTSFEAWHGYKPKVSGLRTFGCLCYYLTPSVSRDKLDHRGEAGIFVGY 1148
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A4C1SWH4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SWH4_EUMVA) HSP 1 Score: 106 bits (264), Expect = 8.200e-27 Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I ++ + AYTPQQNGVAER+ R++ EM+RA ++ AN+G+ WAEAV +AVY NR+PT+ G T +E W+G PK+ HLRVFG A V Q++K D K V++ Y
Sbjct: 24 IVRQLTVAYTPQQNGVAERANRTLVEMSRAMLLHANLGKHLWAEAVSTAVYLRNRSPTKALLGKTPFEVWYGYKPKVGHLRVFGSYA-VALDKTQKQKFDAKGQKYVMVGY 133
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A6P6AH64_DURZI (uncharacterized protein LOC111309412 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AH64_DURZI) HSP 1 Score: 111 bits (278), Expect = 1.370e-26 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I+ + +A YTPQQNGV ER R+I EMAR + N+ +++WAEAV ++VY LNR PT+ G T +E W+G P + HLRVFG YV +R KLD KA + L Y
Sbjct: 261 IEHQLTATYTPQQNGVNERKNRTIMEMARCMLFEKNLSKKFWAEAVNTSVYLLNRLPTKALKGNTPFEAWYGSKPSVHHLRVFGSICYVFVPDIKRDKLDQKAEICIFLGY 371
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 111 bits (278), Expect = 2.650e-26 Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
I+ E + TP+QNGVAER +++ E R+ + A + +++WAEA+ +AVY NR+PT+ G T +E W GE PK+DHLR+FGCT Y ++R+KLD KA +LL Y
Sbjct: 35 IRHELTVPKTPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGY 145
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA) HSP 1 Score: 111 bits (277), Expect = 3.660e-26 Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
IK +++A+Y+PQQNGVAER RS+ EM R + A + ++YWAEA+ +AVY N +PT+P N T YE WHG PK++HLR+FGC A+ +R+KL A L Y
Sbjct: 124 IKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGY 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19802.5050.1 >prot_H-paniculata_contig19802.5050.1 ID=prot_H-paniculata_contig19802.5050.1|Name=mRNA_H-paniculata_contig19802.5050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVback to top mRNA from alignment at H-paniculata_contig19802:4435..4767+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19802.5050.1 ID=mRNA_H-paniculata_contig19802.5050.1|Name=mRNA_H-paniculata_contig19802.5050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig19802:4435..4767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19802:4435..4767+ >mRNA_H-paniculata_contig19802.5050.1 ID=mRNA_H-paniculata_contig19802.5050.1|Name=mRNA_H-paniculata_contig19802.5050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig19802:4435..4767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |