mRNA_H-paniculata_contig19802.5050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19802.5050.1
Unique NamemRNA_H-paniculata_contig19802.5050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 112 bits (281), Expect = 1.300e-28
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            ++ + + AYTPQQNGV ER  R++ EMAR+ +I  ++ +++WAEAV +AVY LNR PT+     T  E W G+ P +DH R+FGC  YV    ++R KL++K   G+ L Y
Sbjct:   78 LEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGY 188          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 116 bits (291), Expect = 4.880e-28
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I+ +F+ +YTPQQNGV+ER  R++ EM+R  +    + +++WAEAV ++VY LNR  TR  NG T YE W+G  P +DHLR+FGC  Y      +R KLD KA  G+ L Y
Sbjct:  430 IEHQFTVSYTPQQNGVSERKNRTVMEMSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGY 540          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 114 bits (285), Expect = 3.130e-27
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I+ + +  YTPQQNGV+ER  R++ EMAR  +    + + +WAEAV ++VY LN  PT+   G T +E WHG TP ++HL+VFGC  Y +    +R KLD K+  G+ L Y
Sbjct:  543 IQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGY 653          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A1U8L3M3_GOSHI (LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like n=3 Tax=Gossypium TaxID=3633 RepID=A0A1U8L3M3_GOSHI)

HSP 1 Score: 114 bits (284), Expect = 4.370e-27
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I+ + +  YTPQQNGV ER  R++ +MAR  +  A M   +WAEAV +AVY LNR PT    G T +E W G+ P + HL+VFGC  YV+   E+R KLD ++  GV + Y
Sbjct: 1946 IQHQLTTVYTPQQNGVCERKNRTVLDMARCLLFEAKMPNAFWAEAVNTAVYLLNRLPTNAVKGKTPFEAWFGQKPSVSHLKVFGCLCYVLVPKERRTKLDRRSMPGVFVGY 2056          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A537QRN8_9PROT (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QRN8_9PROT)

HSP 1 Score: 113 bits (283), Expect = 5.820e-27
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I  E SA YT  QNGV+ER  RSI E AR  +  A++G R+WAEAV +AVY LNR+PTR   G T YE W+G  P L HLR FGC A+V    E+R+KL  K+   V+L Y
Sbjct:  616 ISFEPSAPYTQNQNGVSERKIRSIVEKARCMLHDASLGARFWAEAVSTAVYLLNRSPTRALEGQTPYEAWYGSRPSLHHLRRFGCNAFVHVPPEKRKKLQAKSRCCVMLGY 726          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A6P5MS85_ARADU (DNA-directed RNA polymerase subunit n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5MS85_ARADU)

HSP 1 Score: 113 bits (283), Expect = 5.970e-27
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            IKQ+F+  YTPQQNGV+ER  RSI EM R  +    + + +WAEAV +AV+ LNR PT+  N  TS+E WHG  PK+  LR FGC  Y +  S  R KLD +  AG+ + Y
Sbjct: 1038 IKQQFTVPYTPQQNGVSERKNRSIVEMGRCMLQGKQLPKSFWAEAVNTAVFLLNRLPTKALNKQTSFEAWHGYKPKVSGLRTFGCLCYYLTPSVSRDKLDHRGEAGIFVGY 1148          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A4C1SWH4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SWH4_EUMVA)

HSP 1 Score: 106 bits (264), Expect = 8.200e-27
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I ++ + AYTPQQNGVAER+ R++ EM+RA ++ AN+G+  WAEAV +AVY  NR+PT+   G T +E W+G  PK+ HLRVFG  A V     Q++K D K    V++ Y
Sbjct:   24 IVRQLTVAYTPQQNGVAERANRTLVEMSRAMLLHANLGKHLWAEAVSTAVYLRNRSPTKALLGKTPFEVWYGYKPKVGHLRVFGSYA-VALDKTQKQKFDAKGQKYVMVGY 133          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A6P6AH64_DURZI (uncharacterized protein LOC111309412 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AH64_DURZI)

HSP 1 Score: 111 bits (278), Expect = 1.370e-26
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I+ + +A YTPQQNGV ER  R+I EMAR  +   N+ +++WAEAV ++VY LNR PT+   G T +E W+G  P + HLRVFG   YV     +R KLD KA   + L Y
Sbjct:  261 IEHQLTATYTPQQNGVNERKNRTIMEMARCMLFEKNLSKKFWAEAVNTSVYLLNRLPTKALKGNTPFEAWYGSKPSVHHLRVFGSICYVFVPDIKRDKLDQKAEICIFLGY 371          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 111 bits (278), Expect = 2.650e-26
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            I+ E +   TP+QNGVAER  +++ E  R+ +  A + +++WAEA+ +AVY  NR+PT+   G T +E W GE PK+DHLR+FGCT Y     ++R+KLD KA   +LL Y
Sbjct:   35 IRHELTVPKTPEQNGVAERMNKTLMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGY 145          
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 111 bits (277), Expect = 3.660e-26
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAVYFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLDDKAWAGVLLEY 333
            IK +++A+Y+PQQNGVAER  RS+ EM R  +  A + ++YWAEA+ +AVY  N +PT+P N  T YE WHG  PK++HLR+FGC A+      +R+KL   A     L Y
Sbjct:  124 IKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGY 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19802.5050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0WJT9_9ASPA1.300e-2845.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3HGA4_COCAP4.880e-2847.75Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A151T355_CAJCA3.130e-2745.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A1U8L3M3_GOSHI4.370e-2746.85LOW QUALITY PROTEIN: pleiotropic drug resistance p... [more]
A0A537QRN8_9PROT5.820e-2753.15DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A6P5MS85_ARADU5.970e-2749.55DNA-directed RNA polymerase subunit n=1 Tax=Arachi... [more]
A0A4C1SWH4_EUMVA8.200e-2748.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P6AH64_DURZI1.370e-2647.75uncharacterized protein LOC111309412 n=1 Tax=Durio... [more]
A0A498M2F0_LABRO2.650e-2645.95Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2M4CK12_ANODA3.660e-2647.75Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19802contigH-paniculata_contig19802:4435..4767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score113.2
Seed ortholog evalue7.6e-23
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929496.5794775-CDS-H-paniculata_contig19802:4434..47671622929496.5794775-CDS-H-paniculata_contig19802:4434..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19802 4435..4767 +
1691480886.974425-CDS-H-paniculata_contig19802:4434..47671691480886.974425-CDS-H-paniculata_contig19802:4434..4767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19802 4435..4767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19802.5050.1prot_H-paniculata_contig19802.5050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19802 4435..4767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19802.5050.1

>prot_H-paniculata_contig19802.5050.1 ID=prot_H-paniculata_contig19802.5050.1|Name=mRNA_H-paniculata_contig19802.5050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
IKQEFSAAYTPQQNGVAERSWRSIFEMARARMITANMGRRYWAEAVRSAV
YFLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYVMFQSEQRRKLD
DKAWAGVLLEY
back to top

mRNA from alignment at H-paniculata_contig19802:4435..4767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19802.5050.1 ID=mRNA_H-paniculata_contig19802.5050.1|Name=mRNA_H-paniculata_contig19802.5050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig19802:4435..4767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGCAGGAGTTCTCTGCCGCCTACACACCGCAACAAAACGGTGTGGC GGAGCGCAGCTGGCGCAGCATTTTCGAGATGGCAAGAGCCAGAATGATCA CCGCCAACATGGGTCGTAGATATTGGGCGGAAGCGGTGCGCTCGGCGGTA TACTTCCTAAATCGTGCCCCGACGCGACCACACAATGGAGGAACGTCGTA CGAAAAATGGCACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCG GCTGCACGGCGTATGTCATGTTCCAGTCCGAACAGAGACGCAAGCTCGAC GACAAAGCATGGGCGGGGGTGCTTTTGGAGTAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19802:4435..4767+

>mRNA_H-paniculata_contig19802.5050.1 ID=mRNA_H-paniculata_contig19802.5050.1|Name=mRNA_H-paniculata_contig19802.5050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig19802:4435..4767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGCAGGAGTTCTCTGCCGCCTACACACCGCAACAAAACGGTGTGGC
GGAGCGCAGCTGGCGCAGCATTTTCGAGATGGCAAGAGCCAGAATGATCA
CCGCCAACATGGGTCGTAGATATTGGGCGGAAGCGGTGCGCTCGGCGGTA
TACTTCCTAAATCGTGCCCCGACGCGACCACACAATGGAGGAACGTCGTA
CGAAAAATGGCACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCG
GCTGCACGGCGTATGTCATGTTCCAGTCCGAACAGAGACGCAAGCTCGAC
GACAAAGCATGGGCGGGGGTGCTTTTGGAGTACATCAAGCAGGAGTTCTC
TGCCGCCTACACACCGCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCA
GCATTTTCGAGATGGCAAGAGCCAGAATGATCACCGCCAACATGGGTCGT
AGATATTGGGCGGAAGCGGTGCGCTCGGCGGTATACTTCCTAAATCGTGC
CCCGACGCGACCACACAATGGAGGAACGTCGTACGAAAAATGGCACGGCG
AGACACCAAAGTTGGACCACCTTCGCGTCTTCGGCTGCACGGCGTATGTC
ATGTTCCAGTCCGAACAGAGACGCAAGCTCGACGACAAAGCATGGGCGGG
GGTGCTTTTGGAGTAC
back to top