mRNA_H-paniculata_contig198.5048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig198.5048.1 vs. uniprot
Match: D8LI07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI07_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.650e-52 Identity = 169/436 (38.76%), Postives = 229/436 (52.52%), Query Frame = 1
Query: 1 SNLHAQLRRLWGGSPPARARGLVAVQEVFGCRQELDRILCALAAREVTLACVRTCAGSKGATSISAANASDSRPFTLSIMEDRFSPVVVDSCELRERAAARVRVMTVAGLRVGLTRRVFAREPLLPSEVEAEEEEQSRRPKGSRPPPVDRESILALVVPSK-SVVSARETAPEE-PVRYPTMAQVATMMWCEEDKENKEEGATQRRR----ETSPATSFVDRLRFSIQNLDGQNFEDQDGEYISSSPSCSSLSPSSSSAXXXFSRDSAXXXXXXXXXVEDSFEDARRFFDDAYGGGRETG----LEGRRTYSSLRTPSIREQVEQCEGYWNRRRELDSVLRRMRAAIRCMDCTLGAAEVRRMAKRVLKVAVLAASETGRAANAAAARSMVRGLGDDNRIRLDDGRHREPRSSQQEQKATALRKGGRWVIVYVGIRR 1278
++L ++L RLWG SPP RA GL ++ + G R++LD IL +R V R G +++ S+ RPFT++ + RF+P V + ELRER RVRV+T AGLRVGL RRVFAREPLLPS+VEAEEE QSR+ + P PVD E + ALVVP + S SA E +PE P YP+MA+V+++MWCE D++ E+SP + LR S+Q LDG +D+D X + + + +S + GG G EG R S +R RE+ E E + R+ E+ SVLRR+R AIR MD T +VR MAKRV+++AV+ AS++ AAR +RGLGD R+R QQ Q+ A WV VYVG+ R
Sbjct: 182 NDLPSKLHRLWGTSPPDRAEGLAVLRNMLGYRKDLDGIL----SRHVPTKGPRYTRPFHGNDYRASSPFSNPRPFTVATLAGRFAPTVTNPSELRERVGTRVRVVTAAGLRVGLARRVFAREPLLPSDVEAEEERQSRQQPDASPAPVDVEDLRALVVPVRASASSAPEMSPEGGPAPYPSMAEVSSVMWCEYDEDXXXXXXXXXXXXXXXESSPGKKRL--LRVSVQTLDGDVCDDEDEXXXXXXXXXXXXXXXXXXXXFGETEEGSFFDTASPQQGRESTGARGTAAGRSRGGDLSEGGRGNAEGARRTSGMRNSKAREE-ELDEVEYQRKEEVASVLRRLRVAIRRMDGTWTEEKVRSMAKRVVRMAVMTASKS-ELVTTTAARGALRGLGDRTRLRR-----------QQAQRGGAGSGDVGWVTVYVGVGR 598
BLAST of mRNA_H-paniculata_contig198.5048.1 vs. uniprot
Match: A0A6H5L387_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L387_9PHAE) HSP 1 Score: 158 bits (400), Expect = 2.200e-38 Identity = 136/350 (38.86%), Postives = 187/350 (53.43%), Query Frame = 1
Query: 1 SNLHAQLRRLWGGSPPARARGLVAVQEVFGCRQELDRILCALAAREVTLACVRTCAGSKGATSISAANASDSRPFTLSIMEDRFSPVVVDSCELRERAAARVRVMTVAGLRVGLTRRVFAREPLLPSEVEAEEEEQSRRPKGSRPPPVDRESILALVVPSKSVVS-ARETAPEE-PVRYPTMAQVATMMWCEEDKENKEEGATQRRRETSPATSFVDR--LRFSIQNLDGQNFEDQDGEYISSSPSCSSLSPSSSSAXXXFSRDSAXXXXXXXXXVEDSFEDARRFFDDAYGGG--RETG---LEGRRTYSSLRTPSIREQVEQCEGYWNRRRELDSVLRRMRAAIRCMD 1023
++L ++L RLWG SPP RA GL ++ + G R+ELD IL +R + G +++++S+ RPFTL+ + RF+P V + ELRER RVRV+T AGLRVGL RRVFAREPLLPS+VEAEEE R+P S P PVD E + ALVVP ++ S A E +PE P YP+M +V+++MWC+ D++ TS + ++ LR S+Q LDG +D+D + + + +S ARR GGG RE G +G R S +R R++ GY R+ EL SVLRR+R AIR MD
Sbjct: 182 TDLPSKLHRLWGTSPPDRAEGLAVLRNMLGYRKELDGIL----SRHMPTKGYSYTRPVHGNDYRASSSSSNPRPFTLATLAGRFAPTVTNPSELRERMGTRVRVVTAAGLRVGLARRVFAREPLLPSDVEAEEE---RQPDDS-PAPVDVEDLRALVVPVRASASPAPEMSPEGGPAPYPSMFEVSSVMWCDYDEDEXXXXXXXXXXXTSTESRPGEKRLLRVSVQTLDGDVCDDEDEXXXXXXXXXXXXXXXXXXTGFSETEEGSFFETASSQQRRES-TGARRTAAGRTGGGDLREGGRGTAKGARWTSGIRNSKARKEELDEIGY-QRKEELASVLRRLRVAIRRMD 521 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig198.5048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig198.5048.1 >prot_H-paniculata_contig198.5048.1 ID=prot_H-paniculata_contig198.5048.1|Name=mRNA_H-paniculata_contig198.5048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=431bp SNLHAQLRRLWGGSPPARARGLVAVQEVFGCRQELDRILCALAAREVTLAback to top mRNA from alignment at H-paniculata_contig198:17105..22372+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig198.5048.1 ID=mRNA_H-paniculata_contig198.5048.1|Name=mRNA_H-paniculata_contig198.5048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5268bp|location=Sequence derived from alignment at H-paniculata_contig198:17105..22372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig198:17105..22372+ >mRNA_H-paniculata_contig198.5048.1 ID=mRNA_H-paniculata_contig198.5048.1|Name=mRNA_H-paniculata_contig198.5048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2586bp|location=Sequence derived from alignment at H-paniculata_contig198:17105..22372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |