mRNA_H-paniculata_contig1979.5041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1979.5041.1
Unique NamemRNA_H-paniculata_contig1979.5041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1979.5041.1 vs. uniprot
Match: D8LM13_ECTSI (Cytosolic carboxypeptidase-like protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM13_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 8.920e-29
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 2 
Query:  332 KIRVVVNSLTFRSDFDSGNLMKVILPAEQNGVGGVYQLWTARDCEGGPNVKRNSSWFHFGVAGGTRNQIITM 547
            KI  VVN LTFRS + SGNL +V+LPAEQ GVGGVYQLWTARDCEGGPN +RNSSWF++GVAGG+ NQIITM
Sbjct:   31 KITTVVNGLTFRSTWCSGNLARVVLPAEQGGVGGVYQLWTARDCEGGPNARRNSSWFYYGVAGGSANQIITM 102
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BLAST of mRNA_H-paniculata_contig1979.5041.1 vs. uniprot
Match: A0A8J2S0W8_9CRUS (Cytosolic carboxypeptidase-like protein 5 n=5 Tax=Daphnia TaxID=6668 RepID=A0A8J2S0W8_9CRUS)

HSP 1 Score: 56.2 bits (134), Expect = 1.670e-5
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 2 
Query:  347 VNSLTFRSDFDSGNLMKVILPAEQNGVGGVYQLWTARDCEGGPNVKRNSSWFHFGVAGGTRNQIITMASELHR 565
            V S  F SDFDSGNL KV++  + +     + LWT  DC   P    N +WF+FGV G +   +      L+R
Sbjct:    5 VGSFHFHSDFDSGNLAKVVINDKNDNE---FHLWTLPDCANTPYENGNRTWFYFGVKGPSNTTVKFNIMNLNR 74
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BLAST of mRNA_H-paniculata_contig1979.5041.1 vs. uniprot
Match: E9GFW0_DAPPU (Cytosolic carboxypeptidase-like protein 5 n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GFW0_DAPPU)

HSP 1 Score: 55.5 bits (132), Expect = 2.750e-5
Identity = 27/73 (36.99%), Postives = 37/73 (50.68%), Query Frame = 2 
Query:  347 VNSLTFRSDFDSGNLMKVILPAEQNGVGGVYQLWTARDCEGGPNVKRNSSWFHFGVAGGTRNQIITMASELHR 565
            + S  F SDFDSGNL KV++  + +     + LWT  DC   P    N +WF+FGV G     +      L+R
Sbjct:    5 IGSFHFHSDFDSGNLAKVVINEKNDNE---FHLWTLPDCANTPYENGNRTWFYFGVKGPCNTTVKFNIMNLNR 74
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BLAST of mRNA_H-paniculata_contig1979.5041.1 vs. uniprot
Match: A0A0P5ZRX5_9CRUS (Cytosolic carboxypeptidase-like protein 5 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5ZRX5_9CRUS)

HSP 1 Score: 55.1 bits (131), Expect = 4.060e-5
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 2 
Query:  347 VNSLTFRSDFDSGNLMKVILPAEQNGVGGVYQLWTARDCEGGPNVKRNSSWFHFGVAG 520
            + S  F SDFDSGNL KV++  + +     + LWT  DC   P    N +WF+FGV G
Sbjct:    5 IGSFHFHSDFDSGNLAKVVINEKNDNE---FHLWTLPDCANTPYENGNRTWFYFGVKG 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1979.5041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LM13_ECTSI8.920e-2977.78Cytosolic carboxypeptidase-like protein 5 n=1 Tax=... [more]
A0A8J2S0W8_9CRUS1.670e-538.36Cytosolic carboxypeptidase-like protein 5 n=5 Tax=... [more]
E9GFW0_DAPPU2.750e-536.99Cytosolic carboxypeptidase-like protein 5 n=1 Tax=... [more]
A0A0P5ZRX5_9CRUS4.060e-543.10Cytosolic carboxypeptidase-like protein 5 n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1979contigH-paniculata_contig1979:7486..9020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog2880.D8LM13
Preferred nameAGBL5
Hectar predicted targeting categoryother localisation
GOsGO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009605,GO:0009607,GO:0009615,GO:0009790,GO:0009792,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0019538,GO:0022607,GO:0030030,GO:0030031,GO:0030496,GO:0032501,GO:0032502,GO:0035608,GO:0035610,GO:0035611,GO:0036211,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0045171,GO:0048856,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0060271,GO:0070011,GO:0070925,GO:0071704,GO:0071840,GO:0072686,GO:0098542,GO:0120031,GO:0120036,GO:0140096,GO:1901564
EggNOG free text desc.protein deglutamylation
EggNOG OGsCOG2866@1,KOG3641@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size717
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1979.5041.1prot_H-paniculata_contig1979.5041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1979 7775..8874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.7853422-UTR-H-paniculata_contig1979:7485..77741622929494.7853422-UTR-H-paniculata_contig1979:7485..7774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 7486..7774 +
1691480886.368174-UTR-H-paniculata_contig1979:7485..77741691480886.368174-UTR-H-paniculata_contig1979:7485..7774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 7486..7774 +
1622929494.8410645-UTR-H-paniculata_contig1979:8874..90201622929494.8410645-UTR-H-paniculata_contig1979:8874..9020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 8875..9020 +
1691480886.3961065-UTR-H-paniculata_contig1979:8874..90201691480886.3961065-UTR-H-paniculata_contig1979:8874..9020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1979 8875..9020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.807703-CDS-H-paniculata_contig1979:7774..79411622929494.807703-CDS-H-paniculata_contig1979:7774..7941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 7775..7941 +
1691480886.3779202-CDS-H-paniculata_contig1979:7774..79411691480886.3779202-CDS-H-paniculata_contig1979:7774..7941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 7775..7941 +
1622929494.823194-CDS-H-paniculata_contig1979:8759..88741622929494.823194-CDS-H-paniculata_contig1979:8759..8874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 8760..8874 +
1691480886.3880372-CDS-H-paniculata_contig1979:8759..88741691480886.3880372-CDS-H-paniculata_contig1979:8759..8874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1979 8760..8874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1979.5041.1

>prot_H-paniculata_contig1979.5041.1 ID=prot_H-paniculata_contig1979.5041.1|Name=mRNA_H-paniculata_contig1979.5041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MQQQQESYAGTASAKIRVVVNSLTFRSDFDSGNLMKVILPAEQNGVGGVY
QLWTARDCEGGPNVKRNSSWFHFGVAGGTRNQIITMASELHRH*
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mRNA from alignment at H-paniculata_contig1979:7486..9020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1979.5041.1 ID=mRNA_H-paniculata_contig1979.5041.1|Name=mRNA_H-paniculata_contig1979.5041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1535bp|location=Sequence derived from alignment at H-paniculata_contig1979:7486..9020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAAGCAAAGAAACATGTAGTACAGGTGTTGATACTACTAGGTAAGTG
TCCACCCTCCCGTTGCACTGCGGAAGCGGTGTTGTTCGGAAGAAGTAATA
TACAGGGTAGTTATTCTCACCTTCGTGGCAGTGCGACAGCAAATAGGTAT
CCGTATCCTGCCTACTGTGGAATACCCGCCTAGATCGCTCCTGTAGATAC
CTCCTCAGCCACCAGCAGAGCGCCGGGTGCAAGCGAGTCATGTTGGGTAT
TGCCTGATTAATAGAAAGATAAATAAGACAGACGTCAAAATGCAGCAGCA
ACAGGAGAGCTATGCGGGGACAGCGTCGGCAAAAATCCGCGTGGTGGTGA
ACTCCTTGACGTTTAGGTCGGACTTCGACTCAGGCAATCTTATGAAAGTG
ATCCTGCCAGCTGAACAGAACGGAGTCGGAGGTGTGTATCAGCTGTGGAC
GGCGAGGTGAGCGAAACGCACTAAAACTACCTGGCCGATGGGATACTCTT
GAAAAAAAACGCTGTTAGCAACGCGCGTGTTAAAATTGAATGAGTCCTGT
GACAAAAGAGCACGGACGAATGGACGTTGACACGAATCAGTGTTATACGT
GATGGGTAAGACGTCAACCAAACGGTACAATCACACACACATCGCTCGGA
GCTTTTTCAAATTGAATTTTATCTCAAGAAAGAGGGCCGGCGCTTACTTC
CCGAAAGAGGCCAATTTATCGGCATATCCTCACGAGTTCTGGGTAGTCGT
AAGGCAGCGTTATGTGTCAACATCTAGCTGCTAATACAAATATCATCCGC
GTTGGAAATTGCCGGAACGGTCTATGTTATGCTTCTTCACATAGATACCG
AATGCATGTCATATATTTTCGGAACAATACATTATTGAGTAGATTGGTAC
CAGGTGCGACATCGCATGAAGAAATTTGCTAGGTTGCAGTTGTGGGGAAC
CTCGACAAAGTTCTATCAGATTCGCAGCTACGTTTTCTTCTCTCCTAACG
TCTGCGAGTAGCCCCAAAATGAGTGCTGCTTGCTGTACGTCGGACGCCTT
TGGTCCTGGGCGTTGAGTACAGATACCTGGAGATTGCGTTTGATTATGCT
GTCCACATCTACCCGCTGTTGAATGGTCCATCAATCGAGACCAAGCGTCA
TTCGCCGTTTCTGCCCAAAAACAAGATGTTGCACACCCATGATGGGGAAC
GCACACCAACTGAAATGCGATATGAAGTCCTTGATTGTCTGAGGACGTTT
GCGGTGTGTGTAACTCTGCCCCAGGGATTGTGAGGGCGGACCCAACGTGA
AGCGAAATTCCAGCTGGTTTCACTTCGGTGTAGCGGGTGGCACGAGGAAT
CAGATCATCACCATGGCGAGTGAGCTGCATCGCCATTGACTTGTTTGCTG
TTGTCCACCTCGCACAGCGAGCTCTATGCGCAATAGAAACTCGAAAGTAC
ACCACGATACGATACCCCGAGTAGACTCCAGGAGGCGCGTCATCCGTAGA
GGTGGAATATGCAGGTGCCACGAGGTGGCCCTACT
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Coding sequence (CDS) from alignment at H-paniculata_contig1979:7486..9020+

>mRNA_H-paniculata_contig1979.5041.1 ID=mRNA_H-paniculata_contig1979.5041.1|Name=mRNA_H-paniculata_contig1979.5041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig1979:7486..9020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAGCAACAGGAGAGCTATGCGGGGACAGCGTCGGCAAAAATCCG
CGTGGTGGTGAACTCCTTGACGTTTAGGTCGGACTTCGACTCAGGCAATC
TTATGAAAGTGATCCTGCCAGCTGAACAGAACGGAGTCGGAGGTGTGTAT
CAGCTGTGGACGGCGAGATGCAGCAGCAACAGGAGAGCTATGCGGGGACA
GCGTCGGCAAAAATCCGCGTGGTGGTGAACTCCTTGACGTTTAGGTCGGA
CTTCGACTCAGGCAATCTTATGAAAGTGATCCTGCCAGCTGAACAGAACG
GAGTCGGAGGTGTGTATCAGCTGTGGACGGCGAGGGATTGTGAGGGCGGA
CCCAACGTGAAGCGAAATTCCAGCTGGTTTCACTTCGGTGTAGCGGGTGG
CACGAGGAATCAGATCATCACCATGGCGAGTGAGCTGCATCGCCATTGAG
GATTGTGAGGGCGGACCCAACGTGAAGCGAAATTCCAGCTGGTTTCACTT
CGGTGTAGCGGGTGGCACGAGGAATCAGATCATCACCATGGCGAGTGAGC
TGCATCGCCATTGA
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