mRNA_H-paniculata_contig19788.5038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19788.5038.1
Unique NamemRNA_H-paniculata_contig19788.5038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: D8LUA8_ECTSI (Iron-sulfur clusters transporter atm1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.510e-35
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1
Query:   19 GRSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKV 249
            GRSIQYTLS+MLFNVLPT++EI LVSGILASQASWKYSAVCCSTI  YSAYT G+TQWRTKFRK+MI+ ENEASAKV
Sbjct:  227 GRSIQYTLSAMLFNVLPTIVEISLVSGILASQASWKYSAVCCSTIVTYSAYTFGITQWRTKFRKQMIAQENEASAKV 303          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A836CGR1_9STRA (Iron-sulfur clusters transporter atm1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGR1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.670e-31
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1
Query:   19 GRSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKV 249
            GRSIQYTL+SM+FNV+P +LEIGLVSGIL SQASW YSAVC  TI AY+AYT+ VTQWRTKFRK+MI LENEASAKV
Sbjct:  236 GRSIQYTLNSMVFNVVPMVLEIGLVSGILLSQASWHYSAVCFGTIGAYAAYTVAVTQWRTKFRKDMIRLENEASAKV 312          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A6H5J9G7_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9G7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.920e-23
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   85 GLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKV 249
            GLVSGILASQASWKYSAVCCSTI  YSAYT G+TQWRTKFRK+MI+ ENEASAKV
Sbjct:  357 GLVSGILASQASWKYSAVCCSTIVTYSAYTFGITQWRTKFRKQMIAQENEASAKV 411          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A1V9YW57_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YW57_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.370e-23
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 NRSIQIG-RSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
            +R+I  G RSI + L SMLFNV PT LEIGLVS I+A Q  W+Y+AV  ST+TAY+ +T+GVTQWRT+ R+ M  LENEA  KV+
Sbjct:  181 SRTIDRGSRSIDFVLRSMLFNVAPTALEIGLVSSIMAHQFGWEYAAVALSTLTAYTGFTVGVTQWRTEIRRRMNKLENEAGGKVI 265          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A5A8E825_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E825_CAFRO)

HSP 1 Score: 99.0 bits (245), Expect = 2.620e-22
Identity = 45/78 (57.69%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   19 GRSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
             RSI + LS+++FNV+PT LEI LVSGILA Q  W+Y+AV  +T++ Y  +T+G+TQWRTKFR++M SLEN+AS++V+
Sbjct:  285 SRSINFVLSALVFNVVPTALEIALVSGILAVQCGWQYAAVAVATLSTYVGFTVGITQWRTKFRRQMNSLENQASSRVV 362          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A6G0X0C2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0C2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.520e-22
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    4 RSIQIG-RSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
            R+I  G RSI + L S+LFNV PT LEI LVSGI+ASQ  WKY+ V   T+TAY+A+T+G+TQWRT+ R+ M  LENEA  KV+
Sbjct:  190 RTIDRGSRSIDFVLRSILFNVAPTALEIALVSGIMASQFGWKYAGVTLGTLTAYTAFTVGITQWRTEIRRRMNKLENEAGGKVI 273          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A067CWK0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CWK0_SAPPC)

HSP 1 Score: 97.1 bits (240), Expect = 1.210e-21
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 NRSIQIG-RSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
            +R+I  G RSI + L SMLFNV PT LEIGLVS I+A Q  W+Y+AV   T+TAY+ +T+GVTQWRT+ R+ M  LENEA  KV+
Sbjct:  178 SRTIDRGSRSIDFVLRSMLFNVAPTALEIGLVSSIMAYQFGWEYAAVTLGTLTAYTGFTVGVTQWRTEIRRRMNKLENEAGGKVI 262          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A485KDU2_9STRA (Aste57867_3545 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDU2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.250e-21
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    4 RSIQIG-RSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
            R+I  G RSI + L S+LFNV PT LEI LVSGI+A+Q  W+Y+AV   T+TAY+ +T+G+TQWRT+ R+ M  LENEA  KV+
Sbjct:  180 RTIDRGSRSIDFVLRSILFNVAPTALEIALVSGIMANQFGWEYAAVTLGTLTAYTGFTVGITQWRTEIRRRMNRLENEAGGKVI 263          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: A0A1V9YN86_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN86_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.020e-20
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 NRSIQIG-RSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
            +R+I  G RSI + L S+LFNV PT LEI LVS I+A Q  W+Y+AV   T+TAY+ +T+GVTQWRT+ R+ M  LENEA  KV+
Sbjct:  183 SRTIDRGSRSIDFVLRSILFNVAPTALEIALVSSIMAHQFGWEYAAVTLGTLTAYTGFTVGVTQWRTEIRRRMNKLENEAGGKVI 267          
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Match: W7TLP4_9STRA (Abc transporter b family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLP4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.760e-20
Identity = 41/78 (52.56%), Postives = 61/78 (78.21%), Query Frame = 1
Query:   19 GRSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCSTITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM 252
            GRSI + LS++LFN++PT LE+GLV+ IL+ Q  WK++ V   T+ AY+ +T+ +TQWRT+FRK+M+ +ENEAS K +
Sbjct:  160 GRSINFVLSALLFNIVPTALEMGLVAYILSVQCGWKHAGVALGTVGAYTVFTILITQWRTQFRKDMVRIENEASGKAV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19788.5038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUA8_ECTSI3.510e-3585.71Iron-sulfur clusters transporter atm1, mitochondri... [more]
A0A836CGR1_9STRA5.670e-3180.52Iron-sulfur clusters transporter atm1, mitochondri... [more]
A0A6H5J9G7_9PHAE2.920e-2387.27ABC transmembrane type-1 domain-containing protein... [more]
A0A1V9YW57_9STRA9.370e-2360.00ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thr... [more]
A0A5A8E825_CAFRO2.620e-2257.69Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A6G0X0C2_9STRA3.520e-2259.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CWK0_SAPPC1.210e-2158.82Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KDU2_9STRA4.250e-2157.14Aste57867_3545 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9YN86_9STRA2.020e-2056.47ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ach... [more]
W7TLP4_9STRA2.760e-2052.56Abc transporter b family protein n=1 Tax=Nannochlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19788contigH-paniculata_contig19788:4361..4612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.9e-29
Seed eggNOG ortholog2880.D8LUA8
KEGG koko:K05662
KEGG TC3.A.1.210
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006810,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031154,GO:0031224,GO:0032502,GO:0032991,GO:0042623,GO:0042626,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.ATP-binding cassette subfamily B
EggNOG OGsCOG5265@1,KOG0057@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.5353296-CDS-H-paniculata_contig19788:4360..46121622929494.5353296-CDS-H-paniculata_contig19788:4360..4612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19788 4361..4612 +
1691480886.2859461-CDS-H-paniculata_contig19788:4360..46121691480886.2859461-CDS-H-paniculata_contig19788:4360..4612Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19788 4361..4612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19788.5038.1prot_H-paniculata_contig19788.5038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19788 4361..4612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19788.5038.1

>prot_H-paniculata_contig19788.5038.1 ID=prot_H-paniculata_contig19788.5038.1|Name=mRNA_H-paniculata_contig19788.5038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
NRSIQIGRSIQYTLSSMLFNVLPTLLEIGLVSGILASQASWKYSAVCCST
ITAYSAYTLGVTQWRTKFRKEMISLENEASAKVM
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mRNA from alignment at H-paniculata_contig19788:4361..4612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19788.5038.1 ID=mRNA_H-paniculata_contig19788.5038.1|Name=mRNA_H-paniculata_contig19788.5038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig19788:4361..4612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCGGTCGATCCAAATAGGCCGGTCAATCCAGTACACGCTGTCGTCGAT GCTGTTCAACGTTCTCCCGACTTTGCTGGAAATTGGCCTGGTATCTGGCA TACTGGCGAGCCAGGCCTCTTGGAAATACTCTGCGGTGTGCTGCTCCACC ATCACCGCGTATTCGGCCTACACCCTGGGCGTGACCCAGTGGAGAACGAA GTTCAGAAAGGAGATGATTTCTCTTGAAAACGAAGCCAGCGCAAAGGTTA TG
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Coding sequence (CDS) from alignment at H-paniculata_contig19788:4361..4612+

>mRNA_H-paniculata_contig19788.5038.1 ID=mRNA_H-paniculata_contig19788.5038.1|Name=mRNA_H-paniculata_contig19788.5038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig19788:4361..4612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCGGTCGATCCAAATAGGCCGGTCAATCCAGTACACGCTGTCGTCGAT
GCTGTTCAACGTTCTCCCGACTTTGCTGGAAATTGGCCTGGTATCTGGCA
TACTGGCGAGCCAGGCCTCTTGGAAATACTCTGCGGTGTGCTGCTCCACC
ATCACCGCGTATTCGGCCTACACCCTGGGCGTGACCCAGTGGAGAACGAA
GTTCAGAAAGGAGATGATTTCTCTTGAAAACGAAGCCAGCGCAAAGGTTA
TGAACCGGTCGATCCAAATAGGCCGGTCAATCCAGTACACGCTGTCGTCG
ATGCTGTTCAACGTTCTCCCGACTTTGCTGGAAATTGGCCTGGTATCTGG
CATACTGGCGAGCCAGGCCTCTTGGAAATACTCTGCGGTGTGCTGCTCCA
CCATCACCGCGTATTCGGCCTACACCCTGGGCGTGACCCAGTGGAGAACG
AAGTTCAGAAAGGAGATGATTTCTCTTGAAAACGAAGCCAGCGCAAAGGT
TATG
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