mRNA_H-paniculata_contig19786.5036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19786.5036.1
Unique NamemRNA_H-paniculata_contig19786.5036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19786.5036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19786contigH-paniculata_contig19786:746..1132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.3493612-CDS-H-paniculata_contig19786:745..11081622929494.3493612-CDS-H-paniculata_contig19786:745..1108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19786 746..1108 +
1691480886.219757-CDS-H-paniculata_contig19786:745..11081691480886.219757-CDS-H-paniculata_contig19786:745..1108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19786 746..1108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.364286-UTR-H-paniculata_contig19786:1108..11321622929494.364286-UTR-H-paniculata_contig19786:1108..1132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19786 1109..1132 +
1691480886.2279704-UTR-H-paniculata_contig19786:1108..11321691480886.2279704-UTR-H-paniculata_contig19786:1108..1132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19786 1109..1132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19786.5036.1prot_H-paniculata_contig19786.5036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19786 746..1108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19786.5036.1

>prot_H-paniculata_contig19786.5036.1 ID=prot_H-paniculata_contig19786.5036.1|Name=mRNA_H-paniculata_contig19786.5036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
AKRFVSGRAGVVGRQAHDTITSLLHKTINWLLFKRKVNKHTPGRDIHKKL
LYAAPVFRARLAPELYVARAFPFKSSQPDNTPHRTYLPTQKIAHHTASHV
NQPRTSCQQRIPATSSRKHL*
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mRNA from alignment at H-paniculata_contig19786:746..1132+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19786.5036.1 ID=mRNA_H-paniculata_contig19786.5036.1|Name=mRNA_H-paniculata_contig19786.5036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig19786:746..1132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAACGGTTCGTTTCTGGACGAGCTGGAGTGGTAGGTAGGCAGGCGCA
TGACACAATTACATCACTACTACACAAGACAATCAACTGGTTATTGTTTA
AGCGCAAAGTAAACAAACACACCCCAGGCCGTGATATTCACAAAAAGCTG
CTCTATGCTGCTCCAGTATTCCGTGCCCGGTTGGCTCCAGAACTATATGT
TGCGCGTGCGTTTCCGTTCAAGTCAAGCCAACCGGATAACACGCCACACC
GCACTTATCTCCCAACACAAAAAATAGCTCATCACACTGCATCACATGTC
AACCAACCGCGGACATCTTGTCAACAGCGTATCCCAGCCACAAGCAGCAG
GAAGCACCTCTAACTAAAGTATTCATACCCCTATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig19786:746..1132+

>mRNA_H-paniculata_contig19786.5036.1 ID=mRNA_H-paniculata_contig19786.5036.1|Name=mRNA_H-paniculata_contig19786.5036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig19786:746..1132+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAACGGTTCGTTTCTGGACGAGCTGGAGTGGTAGGTAGGCAGGCGCA
TGACACAATTACATCACTACTACACAAGACAATCAACTGGTTATTGTTTA
AGCGCAAAGTAAACAAACACACCCCAGGCCGTGATATTCACAAAAAGCTG
CTCTATGCTGCTCCAGTATTCCGTGCCCGGTTGGCTCCAGAACTATATGT
TGCGCGTGCGTTTCCGTTCAAGTCAAGCCAACCGGATAACACGCCACACC
GCACTTATCTCCCAACACAAAAAATAGCTCATCACACTGCATCACATGTC
AACCAACCGCGGACATCTTGTCAACAGCGTATCCCAGCCACAAGCAGCAG
GAAGCACCTCTAAGCTAAACGGTTCGTTTCTGGACGAGCTGGAGTGGTAG
GTAGGCAGGCGCATGACACAATTACATCACTACTACACAAGACAATCAAC
TGGTTATTGTTTAAGCGCAAAGTAAACAAACACACCCCAGGCCGTGATAT
TCACAAAAAGCTGCTCTATGCTGCTCCAGTATTCCGTGCCCGGTTGGCTC
CAGAACTATATGTTGCGCGTGCGTTTCCGTTCAAGTCAAGCCAACCGGAT
AACACGCCACACCGCACTTATCTCCCAACACAAAAAATAGCTCATCACAC
TGCATCACATGTCAACCAACCGCGGACATCTTGTCAACAGCGTATCCCAG
CCACAAGCAGCAGGAAGCACCTCTAA
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