mRNA_H-paniculata_contig1978.5035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1978.5035.1
Unique NamemRNA_H-paniculata_contig1978.5035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 2.500e-96
Identity = 155/268 (57.84%), Postives = 194/268 (72.39%), Query Frame = 3
Query:  171 SSMAILTAVGSILATATIT--QALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDD-NCGFLLESLCMEG-AEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT---NQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSIWA 953
            SS+A L A+  IL   TIT  +AL+V TP+   TVV+G PY V W G+S D RF+IDL YCGSYS+CF++  CGF L ++C EG   GC S A+    V  PEPLGG S+ GY +RIAEVG   D+ RCSDDFYL++S D P VG  G P+I +V+PTA ++AI+GE YTVEFDYDNGFG  +GRFKIDLY      G GDCG WV S+CDKPD+GC DS G+Y++V+P  +E GMYKIRVG+FGDD++YACS +FEV+ A  D+  A
Sbjct:    3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGA 268          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 9.350e-93
Identity = 145/269 (53.90%), Postives = 189/269 (70.26%), Query Frame = 3
Query:  171 SSMAILTAVGSILA-TATITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDD--NCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLP------AMGDSIW 950
            SS+A LTA+  +L  T T T+ALRV TP+   +V +G PY V W G+  D RF++DL YCGSYSFCF +  +CGF + ++C E  + C    +    V  PEP+ G S+NGY VRI+EVG   D+ RCS+DFYLVAS DV   G  G P++ +V+P A ++A++GE YTVEFDYDNGFG  +GRFKIDLY  +G GDCG WV S+CDKPD+GC+DS G+YD+V+P  +E GMYKIRVG+FGDDS+YACS +FE+        A G  +W
Sbjct:    3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 5.150e-87
Identity = 140/256 (54.69%), Postives = 186/256 (72.66%), Query Frame = 3
Query:  171 SSMAILTAVGSILATA-TITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFD--DNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLP 929
            SS+A + A+  +L    T T+ALRV TP+   TVV+  PY V W G+SPD RF+IDL YCGSYSFCF+  D CGF + +LC EG + C +  +    V +PEP+ G S++GY VRI +VG   ++ RCSD+FYL++S D     G   P++ +V+P++ ++A++G  YTVEFDYDNGFG   GRFKIDLY  +GTGDCG WV S+CDKPD+GC D+ G+YDIV+P  +E GMYKIRVG+FGDDSV+ACS +FEV+P
Sbjct:    3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 9.380e-80
Identity = 127/234 (54.27%), Postives = 164/234 (70.09%), Query Frame = 3
Query:  231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPA 932
            AL V TP+EG  VVA   Y VEWTG+  + R++IDL YCGS   C +D CG  + +LC  G +GC  D  G YD++MPEP+ G S +GY VR+A+V    DS  CSD+FYL+A  + P  G  G P + + SP++   A +GEEYTVEFDYDNG G++VGRF IDLY+  G+GDCG ++ ++CDKP IGCKDS G+YD+ +P  AE+GMY IRVG F DDSVY CS+ FE+L A
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 3.650e-77
Identity = 124/242 (51.24%), Postives = 162/242 (66.94%), Query Frame = 3
Query:  222 ITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSI 947
            +  AL V TP+ G  VV+   Y VEW+G+  + RF+IDL YC S   C +D CG  + +LC  G +GC  D  G YD++MPEP+ G S +GY VR+A+V    DS  CSD+FYL+A  D P     G P + + SP+    A +GEEYTVEFDYDNG G++VGRF IDLY   G+GDCG ++ ++CDKP IGCKDS G+YD+ +P  AE+GMY IRVG F D+SVY CS+ FE+L A   S+
Sbjct:   17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSM 254          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 3.270e-74
Identity = 121/231 (52.38%), Postives = 162/231 (70.13%), Query Frame = 3
Query:  231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEV 923
            AL+V+TPS+G+TV+A   Y VEWTG+S D RF+IDL YCGS   C +D+CG  + +LC  G +GC  D  G YD++MPEP+ G S +GY VR+ ++    D+  CSD+FYL+AS++ P VG    P++ + SP +  +A +  EYTVEFDYDNG G++V RF IDLY   G GDCG +V SICDKP IGCKDS G+YD+ +P   ++G YKIRV  F DDS+Y+CS  F +
Sbjct:   19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 3.740e-71
Identity = 125/239 (52.30%), Postives = 161/239 (67.36%), Query Frame = 3
Query:  231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSI 947
            AL V +P+ G  VVA S Y VEWTG++   R+DIDL YCGS   C +D CG  + +LC  G +GC  D  G YDV+MPEP+ G SS GY V + +     D   CS DF L+AST+ P     GA  +++ SP+    A++G EYTVEFDYDNG G++V RF IDLY++ G+GDCG +V +ICDKP IGCKDS G+YD+V+P   ESGMY IRVGVF DD VY CS++FE++     S+
Sbjct:   19 ALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMSV 250          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.670e-70
Identity = 122/239 (51.05%), Postives = 154/239 (64.44%), Query Frame = 3
Query:  231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSI 947
            AL V TPS  + VVA   Y VEWTG+    RF+IDL +CGS   C +D+CG  + +LC  G EGC  D  G YD++MPEP+ G S++GY VR+ +V    DS+ CSD FYL+AS D P  G      + + SP     A +GEEYTVEFDYDNG G+ V RF IDLY   G GDCG +V SICDKP IGCKDS G+YD+ +P   E+G YKIRVG F D+ +Y CS  F ++    +S+
Sbjct:   19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESM 252          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.020e-67
Identity = 118/233 (50.64%), Postives = 158/233 (67.81%), Query Frame = 3
Query:  231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT-NQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 926
            AL V +P+ G++V+A   Y VEWTG+S D+RF+IDL YCGS  FC +D CG  + +LC  GA+GC  D  G YD++MPEP+ G SS GY V + +      S+ CS DF LVASTD P  G  G  S+ + SP+    A++G  YTVE+DY+NG G++  RF IDLY+   GTGDCG +V ++CDKP IGC DS G+YD+ +P    +GMY +RVGVF DD ++ CSE FE++
Sbjct:   19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTD-SNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.370e-65
Identity = 117/231 (50.65%), Postives = 154/231 (66.67%), Query Frame = 3
Query:  231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEV 923
            AL V +P  G++V+A   Y VEWTG++   RF+IDL YC S  FC DD CG  + +LC  GA+GC  D+ G YD+IMPEP+ G SS GY V +       D + CSDDF L+AS D P  G  G  S+ + SP+    A++GE YTVE+DY+NGFG++  RF +DLY   GTGDCG +V ++CD+P IGC DS G+YD+ +P    +GMY IRVGVF D+ +Y CS+ FEV
Sbjct:   19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI2.500e-9657.84EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE9.350e-9353.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI5.150e-8754.69EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LI46_ECTSI9.380e-8054.27EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE3.650e-7751.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG9_9PHAE3.270e-7452.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3E8_ECTSI3.740e-7152.30Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FYL2_ECTSI1.670e-7051.05EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3F0_ECTSI1.020e-6750.64EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE2.370e-6550.65GPI-anchored domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1978contigH-paniculata_contig1978:7248..10514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1655
Cds size795
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.2128232-UTR-H-paniculata_contig1978:7247..79461622929494.2128232-UTR-H-paniculata_contig1978:7247..7946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1978 7248..7946 -
1691480886.159699-UTR-H-paniculata_contig1978:7247..79461691480886.159699-UTR-H-paniculata_contig1978:7247..7946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1978 7248..7946 -
1622929494.2975976-UTR-H-paniculata_contig1978:10353..105141622929494.2975976-UTR-H-paniculata_contig1978:10353..10514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1978 10354..10514 -
1691480886.2101226-UTR-H-paniculata_contig1978:10353..105141691480886.2101226-UTR-H-paniculata_contig1978:10353..10514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1978 10354..10514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.22576-CDS-H-paniculata_contig1978:7946..80921622929494.22576-CDS-H-paniculata_contig1978:7946..8092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 7947..8092 -
1691480886.1703303-CDS-H-paniculata_contig1978:7946..80921691480886.1703303-CDS-H-paniculata_contig1978:7946..8092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 7947..8092 -
1622929494.2383726-CDS-H-paniculata_contig1978:8337..84731622929494.2383726-CDS-H-paniculata_contig1978:8337..8473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 8338..8473 -
1691480886.17766-CDS-H-paniculata_contig1978:8337..84731691480886.17766-CDS-H-paniculata_contig1978:8337..8473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 8338..8473 -
1622929494.2514062-CDS-H-paniculata_contig1978:8828..91311622929494.2514062-CDS-H-paniculata_contig1978:8828..9131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 8829..9131 -
1691480886.1852558-CDS-H-paniculata_contig1978:8828..91311691480886.1852558-CDS-H-paniculata_contig1978:8828..9131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 8829..9131 -
1622929494.2650518-CDS-H-paniculata_contig1978:9499..95901622929494.2650518-CDS-H-paniculata_contig1978:9499..9590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 9500..9590 -
1691480886.193175-CDS-H-paniculata_contig1978:9499..95901691480886.193175-CDS-H-paniculata_contig1978:9499..9590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 9500..9590 -
1622929494.2816465-CDS-H-paniculata_contig1978:10234..103531622929494.2816465-CDS-H-paniculata_contig1978:10234..10353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 10235..10353 -
1691480886.2006247-CDS-H-paniculata_contig1978:10234..103531691480886.2006247-CDS-H-paniculata_contig1978:10234..10353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1978 10235..10353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1978.5035.1prot_H-paniculata_contig1978.5035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1978 7947..10353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1978.5035.1

>prot_H-paniculata_contig1978.5035.1 ID=prot_H-paniculata_contig1978.5035.1|Name=mRNA_H-paniculata_contig1978.5035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MTFSSMAILTAVGSILATATITQALRVTTPSEGMTVVAGSPYPVEWTGSS
PDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIM
PEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPS
IAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGG
WVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSE
AFEVLPAMGDSIWA*
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mRNA from alignment at H-paniculata_contig1978:7248..10514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1978.5035.1 ID=mRNA_H-paniculata_contig1978.5035.1|Name=mRNA_H-paniculata_contig1978.5035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3267bp|location=Sequence derived from alignment at H-paniculata_contig1978:7248..10514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCAAACACGCATTCAAACCCACTCCTATTCCCCACCTCTCTAGACAG CCCTAACGGCAGCAGGAGAGTTCAGCACCCGTCCAAAGCATTGCATTCCG CGATACGCAACCAAGAATTCGGTCAACAGCCCCATCCCATCTTTCTCTTC ATACACAAAAGATGACCTTCTCCAGCATGGCGATCCTGACTGCAGTGGGG AGCATACTGGCAACAGCGACAATTACTCAGGCGTTGCGTGTCACCACACC GTCGGAGGGTATGACTGTGGTAGCTGGGAGGTTAGTGCAAATCATCTTTC CGCACAGGGGTTCGTGTTTCGTACCTATTGCCACGCCGCATGTCAATACA TGATGTGACAGTCATCTTTGGGTAACAGCTAGTGTTTGAATTGAAAAATA AATGTCGGTTGGCACACTGACGTGTAGGGTGGGACGGATTTTTTGTACCA TCTCCCTACCTCGAGGAGAACAACGCTTCATCAGCACGATAACGGGCATC GTGAGTCGCCGCTGTTCAGACAGGTCCACCGCATACGGTACCTACATCGG AGATAGATCATCTGCATGATCCTGCTCAAAACAACTGAGCGCTTGACTTT TAACTTGATTTGCGTGTTTTGTCAGATGAATATTGCCGTGCCGTTTTTTG TTTGGGAGGGGCATGTGACCTTATGATGCCACTGGTCGCTGCCGTCAAAT GCACCACACCACTTTTACCTGATTTTAAGGGTGCTCTCTGCTCGTCGAGG TTTGTGGTCTCTCTCTCACCAATATGAACCCATGTTCCTGTCCCCTGTGC TTCTCATAGAGTGATGCAGAACGCTGAGATGTATCTTGCCCGCAAGTGCC ATCATGATAACCTATTGAGCTGTTCGTCGTTTTTCCGCGTGTCTCCTGTT TGGTTTGGCTCTTTATCGTCGTAGCCCCTACCCTGTGGAGTGGACGGGCT CCTCGCCAGACGCACGATTCGACATCGACCTCACCTACTGTGGTTCCTAC TCGTTTTGCTTCGACGTGGGTGCCCGCCAACATATTTTATTGCAGTACAA GAGATAGGACATCGTACTGTCGTACAACATATCTACTGTACACAACTCTT GCAGCAGTTGGTACATATTGACAGGATCGCGTTGAGATTTCGCTTGTTAG ACTTCCAGGAATCCGCATACGTATGATGTGTAGACATGGCATTGGCTTCT ACTACAAGCACAAGTCGTAATCTAGCACTCAACATATCCTGTACAAAAAG GAGAAATCGGGATTATATTAGTGGGAAAGTTTTTTTCTGCGACCTCTCGC TGATTTCTTCCCACTAGTGACCAGGGTTCACTCCGATCACCCCCCTGCTG TCGTACCCATCGTTCCTCGCGTGCAATCCGCAGGATAACTGTGGTTTCCT CCTGGAAAGCTTGTGCATGGAGGGAGCCGAGGGCTGCGCTTCGGACGCCA ACGGCGGCTACGATGTGATCATGCCAGAGCCGTTGGGAGGAATCTCCAGC AATGGCTATATGGTGCGGATCGCAGAGGTCGGAGGCGGCTTCGACAGTGT CCGATGCTCGGATGACTTTTACTTGGTCGCATCCACGGACGTTCCCATGG TTGGGGGAGGCGGGGCTCCCTCAATAGCTATGGTTTCTCCGACGGCCAAG TCGGTCGCAATTTCCGGGGAGGAGTATACTGTGGAGGTGAGGCTGCAGCG GTGGACGTACGTTTCGTTGATTGTGCGTTACTGTACAGATTTCTCGAGCA CAATAGTTCTCTAGGTATCGACATCCTGACTTGAATACGATATCGAGGAC TCGAACCAGCCACCTTTTTCGTACACCTGTAAGACGTTCCCTTAAATTTC AAGTCGTGTGTTTCAACAGCCGTCATTTTGTGTGTTTTTGTAGGTGCCAC ACGTCATATTCTTGGTTATGATCACGTTTGAAATGTAGAATAAAAATCAC TTTAATAGACCCTTGAAAGTAGATGAGCCATACCAGTACAGTTTGTGTTC CCATTTCCGATGCTACTGTCCGTTTCATGCCTTGTGTTCAGTTTGACTAC GACAACGGATTCGGTAACACAGTGGGACGGTTCAAGATTGATCTGTACAC TAATCAGGGAACCGGTGACTGCGGCGGCTGGGTCGGTTCTATCTGCGACA AGCCTGATATCGGCTGCAAAGACTCGAGTGAGTTGTGTCGTTTGTACAAG ATATCAGCATTGTTCCGTGTTCGAGTGGTTTAGAAGGACGGCATTCGAAT GAAACTTGTCGTGAGTACATGTACTGCTACACCCACTATGATGTGTAATG CTCTACGCGTTCGGCATGTGGAGTGGGTTCTCGGGTTGACGTGATGATGG CTATCTCATTCATTTTTCTAATCCCGTTTGTGTTCCTCGTTTGTGACGAC TACATGCTACTTTTTGCATCAGCTGGAAACTACGACATCGTGATGCCGCC AGTAGCTGAATCTGGTATGTACAAGATTCGCGTAGGCGTGTTTGGGGACG ACTCTGTTTATGCTTGCTCTGAGGCGTTCGAAGTCTTGCCTGCTATGGGC GACAGCATCTGGGCATAGAACGAGTCAGACATGACAGTTTGCCCGTCAAG TTCGTGATGTTTACCGGTGATGGCGGTAGTGAAGCGCTAGATGTACATAT AGATCTGTATCTCTATTCAGGCATTCTGCAGTGACACGGAATCAGGTTCA GACAAAATATCTACCGGCGCGACATCTTCTGCTAAGCATGTAGAGCTATA CTAGACATGTCGAGCACTGACGTATGCATGTTTTTTGTTGTGATGGGTTT GTGTATGTTGGATATTATGTGTTGTGTACGAGATTGTGTTAGGTGTAGCC ACTCGTTATGTGCTGAGAGGACCAACAGTCCGTCGAGCACAATTTCGTTT GTTGAGATCAACCCTTGGGTTGTTGGGTATTGGCGTTCTCCTGGATAATG AGCTCCGGAATCGGTTGTTCCGGTACGTGAGCAGATTTTGTGTCACGTCC ATCGTGGGAAAGTAAATAGAAAATGGGTACCCTTGGGTAGCCGAAGGAGT GTGTGTTCGTGAAGTTAGAGTTGAGTTGGCTGATCGTGGCGGAGATAAAA ACAACTGAGAAACAAAGAATGTGGATGAGCCGGTTGCTTGCATGTATCCT GACAGCGTGTTGGGTTTCACAGATGAAAAACTGCGTCTCGACAACGCGAA GACCCGATGGAGAGAATGACTGAATGGGGTACTTTTTAGAGAGACAGTGT TTCGGTGCTAGGTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1978:7248..10514-

>mRNA_H-paniculata_contig1978.5035.1 ID=mRNA_H-paniculata_contig1978.5035.1|Name=mRNA_H-paniculata_contig1978.5035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig1978:7248..10514- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTTCTCCAGCATGGCGATCCTGACTGCAGTGGGGAGCATACTGGC
AACAGCGACAATTACTCAGGCGTTGCGTGTCACCACACCGTCGGAGGGTA
TGACTGTGGTAGCTGGGAGATGACCTTCTCCAGCATGGCGATCCTGACTG
CAGTGGGGAGCATACTGGCAACAGCGACAATTACTCAGGCGTTGCGTGTC
ACCACACCGTCGGAGGGTATGACTGTGGTAGCTGGGAGCCCCTACCCTGT
GGAGTGGACGGGCTCCTCGCCAGACGCACGATTCGACATCGACCTCACCT
ACTGTGGTTCCTACTCGTTTTGCTTCGACCCCCTACCCTGTGGAGTGGAC
GGGCTCCTCGCCAGACGCACGATTCGACATCGACCTCACCTACTGTGGTT
CCTACTCGTTTTGCTTCGACGATAACTGTGGTTTCCTCCTGGAAAGCTTG
TGCATGGAGGGAGCCGAGGGCTGCGCTTCGGACGCCAACGGCGGCTACGA
TGTGATCATGCCAGAGCCGTTGGGAGGAATCTCCAGCAATGGCTATATGG
TGCGGATCGCAGAGGTCGGAGGCGGCTTCGACAGTGTCCGATGCTCGGAT
GACTTTTACTTGGTCGCATCCACGGACGTTCCCATGGTTGGGGGAGGCGG
GGCTCCCTCAATAGCTATGGTTTCTCCGACGGCCAAGTCGGTCGCAATTT
CCGGGGAGGAGTATACTGTGGAGGATAACTGTGGTTTCCTCCTGGAAAGC
TTGTGCATGGAGGGAGCCGAGGGCTGCGCTTCGGACGCCAACGGCGGCTA
CGATGTGATCATGCCAGAGCCGTTGGGAGGAATCTCCAGCAATGGCTATA
TGGTGCGGATCGCAGAGGTCGGAGGCGGCTTCGACAGTGTCCGATGCTCG
GATGACTTTTACTTGGTCGCATCCACGGACGTTCCCATGGTTGGGGGAGG
CGGGGCTCCCTCAATAGCTATGGTTTCTCCGACGGCCAAGTCGGTCGCAA
TTTCCGGGGAGGAGTATACTGTGGAGTTTGACTACGACAACGGATTCGGT
AACACAGTGGGACGGTTCAAGATTGATCTGTACACTAATCAGGGAACCGG
TGACTGCGGCGGCTGGGTCGGTTCTATCTGCGACAAGCCTGATATCGGCT
GCAAAGACTCGATTTGACTACGACAACGGATTCGGTAACACAGTGGGACG
GTTCAAGATTGATCTGTACACTAATCAGGGAACCGGTGACTGCGGCGGCT
GGGTCGGTTCTATCTGCGACAAGCCTGATATCGGCTGCAAAGACTCGACT
GGAAACTACGACATCGTGATGCCGCCAGTAGCTGAATCTGGTATGTACAA
GATTCGCGTAGGCGTGTTTGGGGACGACTCTGTTTATGCTTGCTCTGAGG
CGTTCGAAGTCTTGCCTGCTATGGGCGACAGCATCTGGGCATAGCTGGAA
ACTACGACATCGTGATGCCGCCAGTAGCTGAATCTGGTATGTACAAGATT
CGCGTAGGCGTGTTTGGGGACGACTCTGTTTATGCTTGCTCTGAGGCGTT
CGAAGTCTTGCCTGCTATGGGCGACAGCATCTGGGCATAG
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