mRNA_H-paniculata_contig1978.5035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 303 bits (777), Expect = 2.500e-96 Identity = 155/268 (57.84%), Postives = 194/268 (72.39%), Query Frame = 3
Query: 171 SSMAILTAVGSILATATIT--QALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDD-NCGFLLESLCMEG-AEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT---NQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSIWA 953
SS+A L A+ IL TIT +AL+V TP+ TVV+G PY V W G+S D RF+IDL YCGSYS+CF++ CGF L ++C EG GC S A+ V PEPLGG S+ GY +RIAEVG D+ RCSDDFYL++S D P VG G P+I +V+PTA ++AI+GE YTVEFDYDNGFG +GRFKIDLY G GDCG WV S+CDKPD+GC DS G+Y++V+P +E GMYKIRVG+FGDD++YACS +FEV+ A D+ A
Sbjct: 3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGA 268
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 294 bits (752), Expect = 9.350e-93 Identity = 145/269 (53.90%), Postives = 189/269 (70.26%), Query Frame = 3
Query: 171 SSMAILTAVGSILA-TATITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDD--NCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLP------AMGDSIW 950
SS+A LTA+ +L T T T+ALRV TP+ +V +G PY V W G+ D RF++DL YCGSYSFCF + +CGF + ++C E + C + V PEP+ G S+NGY VRI+EVG D+ RCS+DFYLVAS DV G G P++ +V+P A ++A++GE YTVEFDYDNGFG +GRFKIDLY +G GDCG WV S+CDKPD+GC+DS G+YD+V+P +E GMYKIRVG+FGDDS+YACS +FE+ A G +W
Sbjct: 3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 278 bits (712), Expect = 5.150e-87 Identity = 140/256 (54.69%), Postives = 186/256 (72.66%), Query Frame = 3
Query: 171 SSMAILTAVGSILATA-TITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFD--DNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLP 929
SS+A + A+ +L T T+ALRV TP+ TVV+ PY V W G+SPD RF+IDL YCGSYSFCF+ D CGF + +LC EG + C + + V +PEP+ G S++GY VRI +VG ++ RCSD+FYL++S D G P++ +V+P++ ++A++G YTVEFDYDNGFG GRFKIDLY +GTGDCG WV S+CDKPD+GC D+ G+YDIV+P +E GMYKIRVG+FGDDSV+ACS +FEV+P
Sbjct: 3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 260 bits (665), Expect = 9.380e-80 Identity = 127/234 (54.27%), Postives = 164/234 (70.09%), Query Frame = 3
Query: 231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPA 932
AL V TP+EG VVA Y VEWTG+ + R++IDL YCGS C +D CG + +LC G +GC D G YD++MPEP+ G S +GY VR+A+V DS CSD+FYL+A + P G G P + + SP++ A +GEEYTVEFDYDNG G++VGRF IDLY+ G+GDCG ++ ++CDKP IGCKDS G+YD+ +P AE+GMY IRVG F DDSVY CS+ FE+L A
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 253 bits (646), Expect = 3.650e-77 Identity = 124/242 (51.24%), Postives = 162/242 (66.94%), Query Frame = 3
Query: 222 ITQALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSI 947
+ AL V TP+ G VV+ Y VEW+G+ + RF+IDL YC S C +D CG + +LC G +GC D G YD++MPEP+ G S +GY VR+A+V DS CSD+FYL+A D P G P + + SP+ A +GEEYTVEFDYDNG G++VGRF IDLY G+GDCG ++ ++CDKP IGCKDS G+YD+ +P AE+GMY IRVG F D+SVY CS+ FE+L A S+
Sbjct: 17 VASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSM 254
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 246 bits (627), Expect = 3.270e-74 Identity = 121/231 (52.38%), Postives = 162/231 (70.13%), Query Frame = 3
Query: 231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEV 923
AL+V+TPS+G+TV+A Y VEWTG+S D RF+IDL YCGS C +D+CG + +LC G +GC D G YD++MPEP+ G S +GY VR+ ++ D+ CSD+FYL+AS++ P VG P++ + SP + +A + EYTVEFDYDNG G++V RF IDLY G GDCG +V SICDKP IGCKDS G+YD+ +P ++G YKIRV F DDS+Y+CS F +
Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 237 bits (605), Expect = 3.740e-71 Identity = 125/239 (52.30%), Postives = 161/239 (67.36%), Query Frame = 3
Query: 231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSI 947
AL V +P+ G VVA S Y VEWTG++ R+DIDL YCGS C +D CG + +LC G +GC D G YDV+MPEP+ G SS GY V + + D CS DF L+AST+ P GA +++ SP+ A++G EYTVEFDYDNG G++V RF IDLY++ G+GDCG +V +ICDKP IGCKDS G+YD+V+P ESGMY IRVGVF DD VY CS++FE++ S+
Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGAT-SGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMSV 250
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.670e-70 Identity = 122/239 (51.05%), Postives = 154/239 (64.44%), Query Frame = 3
Query: 231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVLPAMGDSI 947
AL V TPS + VVA Y VEWTG+ RF+IDL +CGS C +D+CG + +LC G EGC D G YD++MPEP+ G S++GY VR+ +V DS+ CSD FYL+AS D P G + + SP A +GEEYTVEFDYDNG G+ V RF IDLY G GDCG +V SICDKP IGCKDS G+YD+ +P E+G YKIRVG F D+ +Y CS F ++ +S+
Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGAD-SGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESM 252
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.020e-67 Identity = 118/233 (50.64%), Postives = 158/233 (67.81%), Query Frame = 3
Query: 231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYT-NQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEVL 926
AL V +P+ G++V+A Y VEWTG+S D+RF+IDL YCGS FC +D CG + +LC GA+GC D G YD++MPEP+ G SS GY V + + S+ CS DF LVASTD P G G S+ + SP+ A++G YTVE+DY+NG G++ RF IDLY+ GTGDCG +V ++CDKP IGC DS G+YD+ +P +GMY +RVGVF DD ++ CSE FE++
Sbjct: 19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTSS-GYKVVVTD-SNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 222 bits (566), Expect = 2.370e-65 Identity = 117/231 (50.65%), Postives = 154/231 (66.67%), Query Frame = 3
Query: 231 ALRVTTPSEGMTVVAGSPYPVEWTGSSPDARFDIDLTYCGSYSFCFDDNCGFLLESLCMEGAEGCASDANGGYDVIMPEPLGGISSNGYMVRIAEVGGGFDSVRCSDDFYLVASTDVPMVGGGGAPSIAMVSPTAKSVAISGEEYTVEFDYDNGFGNTVGRFKIDLYTNQGTGDCGGWVGSICDKPDIGCKDSTGNYDIVMPPVAESGMYKIRVGVFGDDSVYACSEAFEV 923
AL V +P G++V+A Y VEWTG++ RF+IDL YC S FC DD CG + +LC GA+GC D+ G YD+IMPEP+ G SS GY V + D + CSDDF L+AS D P G G S+ + SP+ A++GE YTVE+DY+NGFG++ RF +DLY GTGDCG +V ++CD+P IGC DS G+YD+ +P +GMY IRVGVF D+ +Y CS+ FEV
Sbjct: 19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1978.5035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1978.5035.1 >prot_H-paniculata_contig1978.5035.1 ID=prot_H-paniculata_contig1978.5035.1|Name=mRNA_H-paniculata_contig1978.5035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp MTFSSMAILTAVGSILATATITQALRVTTPSEGMTVVAGSPYPVEWTGSSback to top mRNA from alignment at H-paniculata_contig1978:7248..10514- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1978.5035.1 ID=mRNA_H-paniculata_contig1978.5035.1|Name=mRNA_H-paniculata_contig1978.5035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3267bp|location=Sequence derived from alignment at H-paniculata_contig1978:7248..10514- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1978:7248..10514- >mRNA_H-paniculata_contig1978.5035.1 ID=mRNA_H-paniculata_contig1978.5035.1|Name=mRNA_H-paniculata_contig1978.5035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig1978:7248..10514- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |