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Homology
BLAST of mRNA_H-paniculata_contig1977.5033.1 vs. uniprot
Match: D7FLT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT4_ECTSI) HSP 1 Score: 305 bits (781), Expect = 2.140e-103 Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 3
Query: 177 MSISKRDVSREVESVFSALAKARVRKDMDPEVLKSSQYLDSKLESHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVHTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESELELQQERAAKGLSAEPAPTFEVDEVDDWETLDELPGDE 677
MSISKRDVSREVESVF+ALAKARVRKDMDPEVLKSSQYLD KLE+HLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAV TSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAES+LELQ+ERAA+GLS EP P+FEV+EVDDWETLD+LPGDE
Sbjct: 1 MSISKRDVSREVESVFTALAKARVRKDMDPEVLKSSQYLDRKLEAHLKLDWYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESKLELQEERAAQGLSNEPTPSFEVEEVDDWETLDDLPGDE 167
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-26_001340.1 |
| Exons | 6 |
| Model size | 686 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1977.5033.1 >prot_H-paniculata_contig1977.5033.1 ID=prot_H-paniculata_contig1977.5033.1|Name=mRNA_H-paniculata_contig1977.5033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MSISKRDVSREVESVFSALAKARVRKDMDPEVLKSSQYLDSKLESHLKLD WYNEQAVKSEARRQANQPPDWICLLLQRDRDARRAWQLLKAVHTSGWGGS SSKPKPAKGQLQNPEKEAYVDSAALAESELELQQERAAKGLSAEPAPTFE VDEVDDWETLDELPGDEVK* back to topmRNA from alignment at H-paniculata_contig1977:15452..22719- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1977.5033.1 ID=mRNA_H-paniculata_contig1977.5033.1|Name=mRNA_H-paniculata_contig1977.5033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7268bp|location=Sequence derived from alignment at H-paniculata_contig1977:15452..22719- (Halopteris paniculata Hal_grac_a_UBK monoicous) AACGCATATACATCTTGACTTCTGTAGTGCAGCAGTGTAACCGTGATTCC
CGAAGGTAATGCGGCCCAACTGAACTTCCCCTATCCAGTAACGCCACCTC
GAAAAGTTTATGTTAATGGAGGGAGTGCGAAAACCGCTCTCCCAGTACAG
TGTTCTTCGTGAACTGGAAGCAGCTTATGTCCATATCCAAACGGGATGTG
TCCCGCGAGGTCGAGTCTGTGAGTATGAATATTAGCGGGTGTACAGGGGT
TGGCGCTCCTCATGCTCACTGGCGTGCTAGGTGCCGCGTGTCGTTTAAAA
TAGAGTATGTCCGATTTACTGCGGCATCTGCTGCTGGCTGTATAACACGC
TCTCTTCATGTATACAACAACTTAAGAGCGCAGGTGGCACTCTGAATTGA
CCCTTTAACAAATGACATAGAGATAGGGTGCGGTAGACTCTTGAGAATTG
CAGCGTGCATAAAGCACGCCGAGGGCAAGTTGACAGCGTACATGTACCTT
TGATCAAAAGTGTTCTCCAGCAACCTCTCCTGGAGTATTTTGGTGCAGCG
ACCCTGTCTAGCGATGATGGATCAAAAGATGCCCCCGAGAAGTGCAAAAC
AAGGTGCGGTGTTTTTGTCTGAAGAGTGCAGTCGTTTCCCTTTTCGTAAC
ATTGTAAAATTGATCGGTCTCTGCGTGGTAGCTATGGCAGCTGGTGTGTC
TTCACTGCACGTGTTGATGCTAGCGCAGTGATTGTGCCTCTCCCAATGGT
TGATATGTGGTGATCACCACATCCACTGCACCCGCCCAGGTCTTTCCAGA
CAGTATATTTACTCTTGTTAGTGTTCATCATTTTGCATTTGTTGTGCGTA
CCGGGAAAAAGTCCAAGAGGAGTATTCTGTGATTTGTGATATGTTTTTAT
TGTTTGTGTTGGAGCTTACTCCTCAACCTTTGAATGCTTTCGTCTGTGGG
CTGCTTATCGCTCCCTATATCAGGTGTTCTCAGCCCTCGCCAAAGCGCGC
GTCCGCAAGGACATGGACCCGGAAGTCCTGAAGTCATCTCAGGTGCGGGT
TTGTGACACTCTTCTGATGTAAGACAGTGATGCCACACACATATCTAGTT
AGTTAACCGCCCGAATTCAAAGATTGACTCTACACGTTCTCGCCTGCTTT
TGTACGCTGTGTTTGCAATCGGTGACTAGAATCTGCGATTTGTAAGTGCC
ATGGATACACCCACGTAGACGGGCTCTCGAAATGCTCCGCTGTACTCGCC
AGTAATGGCCCGGTCAACCTTTGCGTTTGGAAGTTAGGGCGAATCCTAAA
GTCGTTAAGCCTCTGTTATTTCAGACGGTACAGACACGTGAAGAATCACA
ACGAATAATGTGGATGGATGCAGTTCCTTTCTGTGATAGCCGCAAGATAC
CCTACGTGTTACTGCTGCTGCACTGGTGGGCAATAGTGTGTGGAATTCAT
TGCGCTTTAGTGACTGCTTATCATGTGAAAGGCGTAACTTTTTTACACTA
CGAAGAAAAACAAATATTTGCCGTATTCGTCCCCCCCCCCCCCCCCCCAA
ATATTTTCCTTGAGTTTCAGAATGAGCTCGTGTATGATATGTGCCTCGGA
TCATCCGCGACTGCTGGTAATATTCGTGAATCGAATTGGCAGGGGTGGGT
CCTTCAATTATGTGTCCGCTCATTTTGAAACTCAGGGGAAGTTTTTTTTT
TTTTCGTGGCGAATATGCCAAGTATTCGTACTTGTGCGGGGTGAATTTTT
TTCCGCTTAAACATCTTGACGAGTCGCAAATTATTTTGTCAGGGGTTAGA
TTTGATACATGAATCTCGAAGATCAACTGTGCAACTCCTGAGGATGTTTC
TCATGTTACACAATTAAGTGTTCCGAAAAGATCGCTACCTTTTGCAAATT
AATCAACTGTTGTGCCTCTTTGCACTTGCTGCTACCTCGCACTACAAATC
TACATAGAGTAGGAATCAACCCCCAAAGAACTGTTGGAAATAAGGTGTTT
CTCGTGACCAATAAGATGTATTATCTTAGGATCGATCGTGAATTTGTCAT
GCCATCATCATGATCATCACGAAGCCTGTGTTGCGATGTGAAGTCTCGCA
TAACCAACTACGAGCTGGCATGCAACGTGAAAAGATATCACGGAACCGTC
AAATGGGTCAAAGTCTCACGCACCCAATCCCTCACCCGGCGGATTCAGCA
GAAAAATTTTATCACTAACCGCTGGCTGATCGAAATAATCTCACGCGAGT
GAAAAGGATACCCGTAGTTGTGGTCAAGTTTAGAGAGTCAAGAATTGGAC
AAAGCCGTAATGCGCACAACGCTCAAGTAAATGACTGGATATGTGTAAGC
GACACATCATATAAATTCAGTAAATGCAATTTTATCCAGACGCACGCGCT
GCCAATGCACTCTAGGCTCTACTTATGCGTTCGGGTTTAGGTGGCCGGGA
CAAAAGTTGGATTAGGTTGGGGCAACGATGGAAGCTGCCTGATCCGTGTA
AAGATCCCTAACTTGGTTCTAGACGGAAACTCACAACATTGGATGGTGTG
TGGCCTCTTACTATTGGAAATGACTCCAGTTGTGGGGATCGTAGCGTGGG
TACAAAACAAGTGTATTATGAGAAGGTCAAGAGACTGCATCCAACGAAGA
TGCAGGATGAAACAACGAAATAATTAATTTCCAAGAAAGAAGCGTACTTC
TGGTTGGCTCAAGTGTGCACATCACACAGCCAACGGTTTTTATTTTTTTA
TTTTCCCCCTAAAACAAGTCATGATCTAGAGGTTGATCTGGGCGAAAGAT
AAAAATTAATGGGAACGTTCGCGATACATGGTTATGTAGCAACGGAACAA
ATCGAAAAACGGCTGATACGCACACCACGGTCGTGAGACACTGCTCCAAG
CTAAAATGTAGATCAGGTTATAACTCGTGACGAGTGGAGTACCCTAGATG
ACACAGTCAATCGCGTGTCTTGTGTAGACTGGACTATATCAGAATTGGTA
ATCTCTCGACGGGGCCACTGCGGCACGGTGTAGTGCATTACATACCAAGG
TTCCATTGGGCCGATGTACTTCCTCCGTTTCTTAAGTCTGCGACGTCAAG
GATATAAGTTGTTGCGATGACCTCCGAATCTATAAACGGTTCGCAGAGTC
GAATTTCTGGTGTTTTTCACGTTTACTTTCCTCGTTCCCATCAATCCACG
ATTCTACCACCGCGTCGAAAGCCTCCCGATCAATCTTGACCGATTTTGGC
AGACTCCCCGGACGCCGCCTTTTATTGGTTTTGGTGTGCTGTAGCTCGAA
ATCGTTACCTCGCAGCGCCTTCAAGACCTAATTGTACCGTGTAAAGAGGC
TTCGCTACACACCCTCTAAAGTTGCGGCGTCGTACGCATCGGACATTCAT
TTCACCCCCTCCACAATGCCGTCTATCGTGCCGTAACACTCCCTCCAAAT
CCTACTTTTCAGATATGCGCGAAGACCCCCCAAATCATTTATGTTAAGAT
CTCGTCACTGCTCAGGCTGAGTTACGAGATTGACATTTCACCCCCCGTCC
CTCTCAAGTTCGTGAAGCTTCCGCGGCGTGTCTTTCCCTCTGTGAGGGGT
CGCTCCGTCCTGCTGCGCGACCACTTCCTCACCCTCGAACCATGGGATCT
TTTCCTTCAATACTGGGAGAAAATTTCCTTGTACCATTCCTATTACTACT
CGGCGTCAATGGTCACGTCGAACTCGTAGTGCTGCCCGCGTTCACGCCGG
GCCAAATTCCTCTGCGCCTGCTCGATGACGCAAACACGCCAGATTCCAAT
CTTGCCGTCTAAATCACGGGAAGGATCTCAACGCGAAACTGCGCAGGTTA
GCATCAACTTAGGAATGTGTCTCTTGTGCTGTACTTGGGTCGACCTCACC
TTTTCTTCCCTGGGTAATATGCGGACGCGATCCCTGTCGCGAATTAGGTA
AAACAACGCTTCGTCAATGTGAACTGATTGGAAGCCACTCCTGAAAGTGA
TGCGGTTTCTTTCTGCTTGGTCCAGGATGGAGTCTACCCAGTTCTTTCTG
TGCGTCAGCAACGAAGATCGGGTAATGCGCCGTTTGATCCTTGCAGCGCC
CATCTCTTTGAACCATCGCTGAAGCATTGAGCTGCCGGCTTCGAGACCAA
CTTCGGGTAGGTTGGCATACAGGTGATGGAGGGTCAGGGTTTGATTATTG
CCGTTGACCCTTCGAAACGTGGCCTACTTTGTCAGTGTGAAGTCCGACGG
CTGCCCGCTTCGTGATGCTGACCTCAGCGAAAGGGTGTTGCCATGGTCCA
GTTCTCGTACACGCGACCAAAGTTGTCTGGGATATTGGTCAACTCCAAAT
TGCTCCGCCAACTCTGGTCCGACCTCTTTCGGAAGCCCTTTCTTACCAGG
AGGTAGCGCCAAAGCACACCGCACGGCCAAGGCGCTTTGACCTTCCTCGC
TCAGCTCGTAATTTTTACCCCGGGCTGCATCAGCTGTCGGCAAAAGATGA
CGAACTCGCCGGAGTGATGATGTTGGTTGCGAAAATCTCGCTGCAGATGA
TCTGGGAGTTGCACCAGAGTCGTACAGCTCGTAATGAGGTGCCAAGATTA
TGTGTGACGATTGAGGGGGGGCGCTTTGTCCGCCGCTGGGCGCAGCGCAG
CTACTCAAAATGGAGCCGAAGAGGACTTGTTTTATACTTCGCCCCCCTGG
AGAATGATTCGGAACTGTTTCGAAAGAATATGCCAGAACGAAATAGTTAT
TCTTAAATATCATTCCCATAGGTTCGATTCCAATCATCTTTGACCGAAAA
ACTCTCTATATTCGTAGAGAAATGGCCTACCCAAGAACTGGGAAGTTATA
AGGTCGTGAACTCATGAAACTCGTGTGTTGACGGAATAAGGAGACATCTT
GTTCGGAGATGAAGTGCTAGTGTTGCAGGTAACATCTTCGGATTAGATGC
GGTTTCGCTAAAACAGCCGACAAAAAACCCGAATTTTTGTCACGAAGCGG
AGTACACAGTCATGTCACGATCGTCATCATTTCTTTGTTCGTTCATATCT
TTTTTGCAGTACCTGGACTCAAAGCTGGAATCTCACCTGAAGTTGGACTG
GTACAACGAACAGGCAGTCAAAAGCGAGGCGCGCCGCCAGGCCAACCAGC
CGGTGAGAGCATTGGTAGTTACGGCAGCGCATGACGATATCAAAAGCGTG
GCGTAGAATGTCCTACTCCCCATCCCGACACGTGGTGATCCCGGAGCTTC
AACCAACCAGCGTAAACGCCGGGTGCACGTCGGATACGTCGGGTTACGTA
GCGGCTGTTAGCTGCCCCGCCCACGTGGACGTTGCCTTGAGATGTGATTT
GACAACGGAAAACGTCATGTCCTGAACGATATCTCGTTTCTCGTGGTACA
TGTCTTGGGCTTTCCTTGATCCTGCAGTTGCTGATGCTGGCAGTCCCGCA
TGTTGTTGGCCATCGTACCCGATTCAGACTGCCCCATTGTATACCACGAT
GGACCCTAATGTAAACGTGAAGAATGGATAAGGCGCGCCATGCTTGAAAG
TCCTGTTGCGCCCTAGCATATGGAGAATCTTGCCCTGTCTGGTGTGGTTG
AAGATGAAAAAAAAAGTGGACCGCCGGATTTTAGCTTTGGGCGTCTCTGG
CCGTTTTTTTTGTGGCTGTTGTGAACAAAGATAGGTTGTCTTCGTCATTC
ATCAGTCTTAGATGATAGTTTCATCGGGAGAAGGCAGTAGCCATGTGATC
GAAGCCCTTACGACCACGTCGAAGCCAATGGGTCCATTGCTGTACCGATT
GTATTTTGCTTGCACAGGGTGGCGCAAAGTCATGCGTATTTTTGTAGAAG
CTAAACACCCTGTTTTCACGCACACTTAGATGAATGCATGGTATCACTCA
ATGTCACTTTCCGCTGTTACACGCAGCCGGACTGGATTTGTCTCCTGCTG
CAAAGGGACCGTGACGCCCGCCGCGCGTGGCAACTGCTGAAAGCCGTGCA
CACTTCGGGTTGGGGCGGTTCGTCTTCGAAGCCGAAGCCGGCCAAGGGAC
AGCTGCAAAACCCCGAAAAGGTGGGCAAGTAGGATAGTCGACTAGCTGAT
GGATAGTGTTACCTTAACAAACCCTTCACCCTTTGTGACGTCTTGTGGAT
TTTATTTGGGAGGGCACCGGGTTGGGATAGACAGAATTGCATTTGGTGGG
GATGATACGATACCGTTCTGTTTCAACACATGCACTAAGATGTATGACAT
CATGTGACAAAGGCACAAGAACGAAGAGCGCGATGTCTATGCGGCCGATA
TTGACTTCAGCGAGGCCTTAACCAAATTGATGAGTTTTAAGAAGTTTCCG
TTCAATTCAGGTCATCGGCCACCAAATGCCTTCTTGATGTGTGGAACATC
ACCATGAAGTCATGAATCAAACCTTTTTTGTTTTGGTTCTACTTTTAATT
TTTTTGTTCTCAAACTATGTTTCGTGTGTTTCTCATGTTGGATCATCGCT
TGGTTAACATTCGTCTGTATACTCAATACGTGATGAGGGAAGTGTTGCGT
GGTAGGGTGGGTTGTGGCTGTCTTGGGATTCATGGTGTGATTTGGTATTG
ATGTTTTTCCCTCGCGCGCCCTCTAGGAAGCGTACGTTGACTCGGCGGCT
CTAGCAGAGAGTGAGCTCGAGCTGCAGCAGGAGCGTGCTGCCAAGGGACT
GAGCGCGGAACCCGCCCCGACATTTGAAGTGGATGAGGTGGATGATTGGG
AGGTGAGCTGGTGTCATGGCTGTACGCAATGTCGTGTGTTGTTGGCTGCT
GTAGCTACATGTATAGTGACGAACGTGTTGGTGCAGGGATTTGGTGGATG
GTTTCCGGAAAAAATACGTACCTAGCGTCTGATAGTTTTTTTGTGGCGTG
TGCATGGCTAGATGCTTTTGTGTACTGCTGAATCCACATCTTGCTTGCAG
TACCCTTCTCGTCAGACTATTTCGTCTGCGTTTTATAGGTGAAATCGATT
GGGCTACCCATCCTGTGAAGCACCTCTTCTCTAATTACATCCCAACTTTT
GTCGAGCACAGCATGACAAAAAGTCCTTGTGTCGAAACGTGGCGTTCTCT
AAACTTAGGATGGTGGCGCAAAGTGATGTAATCTTTACTAGTTTCCAGTT
ATCTCACGCATGCCGATGCGTCTCCTCCGCAGCTGGTACCTATAACAGTT
TCACTATTCTATTGACTTGCGTTGTGCTGCAGACTCTCGACGAGCTGCCT
GGAGACGAGGTAAAGTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1977:15452..22719- >mRNA_H-paniculata_contig1977.5033.1 ID=mRNA_H-paniculata_contig1977.5033.1|Name=mRNA_H-paniculata_contig1977.5033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig1977:15452..22719- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCCATATCCAAACGGGATGTGTCCCGCGAGGTCGAGTCTATGTCCAT ATCCAAACGGGATGTGTCCCGCGAGGTCGAGTCTGTGTTCTCAGCCCTCG CCAAAGCGCGCGTCCGCAAGGACATGGACCCGGAAGTCCTGAAGTCATCT CAGGTGTTCTCAGCCCTCGCCAAAGCGCGCGTCCGCAAGGACATGGACCC GGAAGTCCTGAAGTCATCTCAGTACCTGGACTCAAAGCTGGAATCTCACC TGAAGTTGGACTGGTACAACGAACAGGCAGTCAAAAGCGAGGCGCGCCGC CAGGCCAACCAGCCGTACCTGGACTCAAAGCTGGAATCTCACCTGAAGTT GGACTGGTACAACGAACAGGCAGTCAAAAGCGAGGCGCGCCGCCAGGCCA ACCAGCCGCCGGACTGGATTTGTCTCCTGCTGCAAAGGGACCGTGACGCC CGCCGCGCGTGGCAACTGCTGAAAGCCGTGCACACTTCGGGTTGGGGCGG TTCGTCTTCGAAGCCGAAGCCGGCCAAGGGACAGCTGCAAAACCCCGAAA AGCCGGACTGGATTTGTCTCCTGCTGCAAAGGGACCGTGACGCCCGCCGC GCGTGGCAACTGCTGAAAGCCGTGCACACTTCGGGTTGGGGCGGTTCGTC TTCGAAGCCGAAGCCGGCCAAGGGACAGCTGCAAAACCCCGAAAAGGAAG CGTACGTTGACTCGGCGGCTCTAGCAGAGAGTGAGCTCGAGCTGCAGCAG GAGCGTGCTGCCAAGGGACTGAGCGCGGAACCCGCCCCGACATTTGAAGT GGATGAGGTGGATGATTGGGAGGAAGCGTACGTTGACTCGGCGGCTCTAG CAGAGAGTGAGCTCGAGCTGCAGCAGGAGCGTGCTGCCAAGGGACTGAGC GCGGAACCCGCCCCGACATTTGAAGTGGATGAGGTGGATGATTGGGAGAC TCTCGACGAGCTGCCTGGAGACGAGGTAAAGTAGACTCTCGACGAGCTGC CTGGAGACGAGGTAAAGTAG back to top
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