mRNA_H-paniculata_contig1976.5028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1976.5028.1
Unique NamemRNA_H-paniculata_contig1976.5028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1976.5028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1976contigH-paniculata_contig1976:3217..6868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionJAB1/MPN/MOV34 metalloenzyme domain
Ec32 orthologEc-09_004300.1
Exons3
Model size2265
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1976.5028.1prot_H-paniculata_contig1976.5028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1976 5086..6823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.2431927-UTR-H-paniculata_contig1976:3216..50851622929493.2431927-UTR-H-paniculata_contig1976:3216..5085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1976 3217..5085 -
1691480885.666728-UTR-H-paniculata_contig1976:3216..50851691480885.666728-UTR-H-paniculata_contig1976:3216..5085Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1976 3217..5085 -
1622929493.313819-UTR-H-paniculata_contig1976:6823..68681622929493.313819-UTR-H-paniculata_contig1976:6823..6868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1976 6824..6868 -
1691480885.7190385-UTR-H-paniculata_contig1976:6823..68681691480885.7190385-UTR-H-paniculata_contig1976:6823..6868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1976 6824..6868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929493.2602499-CDS-H-paniculata_contig1976:5085..52921622929493.2602499-CDS-H-paniculata_contig1976:5085..5292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1976 5086..5292 -
1691480885.6764584-CDS-H-paniculata_contig1976:5085..52921691480885.6764584-CDS-H-paniculata_contig1976:5085..5292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1976 5086..5292 -
1622929493.2768044-CDS-H-paniculata_contig1976:6321..64271622929493.2768044-CDS-H-paniculata_contig1976:6321..6427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1976 6322..6427 -
1691480885.6859782-CDS-H-paniculata_contig1976:6321..64271691480885.6859782-CDS-H-paniculata_contig1976:6321..6427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1976 6322..6427 -
1622929493.2946448-CDS-H-paniculata_contig1976:6785..68231622929493.2946448-CDS-H-paniculata_contig1976:6785..6823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1976 6786..6823 -
1691480885.7057686-CDS-H-paniculata_contig1976:6785..68231691480885.7057686-CDS-H-paniculata_contig1976:6785..6823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1976 6786..6823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1976.5028.1

>prot_H-paniculata_contig1976.5028.1 ID=prot_H-paniculata_contig1976.5028.1|Name=mRNA_H-paniculata_contig1976.5028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MKLVVQALAKMGRYYARMPRRATWGTKHGTPALEKLLRSLAPTVEHMELP
APDAASFLRDAAILLLSCFRETSAAAAKKAQVAARKRMREDAADGGRARK
SSRRSAWSTDGSVHEG*
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mRNA from alignment at H-paniculata_contig1976:3217..6868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1976.5028.1 ID=mRNA_H-paniculata_contig1976.5028.1|Name=mRNA_H-paniculata_contig1976.5028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3652bp|location=Sequence derived from alignment at H-paniculata_contig1976:3217..6868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGAGCGGAGCGGGTCTGAGAGCGGGGGGCTATGGACCTGAGATGAA
GCTGGTTGTCCAGGCGCTAGCAAAGATGGGAAGGTAAAGTCGTGGTTGAA
CACAAAGATTGTGTGCCAGGGGAGTGGATACTGTGCTGTGGAGTTGGGTT
CCTTTTTCTGTTACAGTTCGATTGTATTGTTTTTGGTCTTGCTGCTAGGT
TCTCTACTGCCAGCGGCAGTTCCGTTTGGAGCTGTGTTTGTTTTTGTGTA
TTTATTTTTGTCATTTTTGTCTTGGTTTGTTTTTTTCTTCGTCGTTGATA
TGATTTTACAGCCTGCGGTAAGCTATTGTCGGAGTTGTATGGGCGCTGTC
GTTTGTACCGAGTATGGCAAGCGGTGCCGCGACTAAGGGATTTTTGTTTC
CGGCGCTGCGTGCTCACCTTTCGCACGTCATAATTCTGCAGATACTACGC
GCGGATGCCGAGGCGCGCCACGTGGGGAACGAAGCATGGCACACCAGCTC
TCGAGAAGCTCTTGCGCTCTCTCGCTCCGACGGTTGAACACATGGAGGTG
CGTTGCTATAGAGCAGCTACTACAGCGTACTTCGCTATTTGAGCGTGTTG
AGTTTCTTTACAGGAAATGATGCCGTAGGTCAAACAAGCTCGTTGGTTGC
GATGGTGCGAGTGTTGAACTCGTGTGTCCTTAGTGCCGTGGTTTTTTGTT
CAGAGATGTTGATTTCGTTGATTAGCGCTGTCAGTTCCCGGTAAAGTACA
CATGAATCAGCAGTGCCCCGTCACTTACAACCGAAGAACCCTGGTCATCC
CCAGACCTGCGTCGACCCCAAATCTCCATAGGAGGAGGGCATACTGAAAT
CAGGCAATGGTGGCATCACAATGGATAATCCAGCAGGTACCTTTTTACCG
TTCGAGTTTAAGTGAATTCCATTTGTTTTCGCTTCCATATTGTAATGGGG
TTGTTAATGCTGGGCTCATACAAGGAGTTCTTGGCACCGCAGGAGGTGAA
CAGGAGGTACGTACTGTACAGCACCGTGGAACATAATATGTCGTGGATAT
TAGGACGCTGAGACCATGTAGTTTTCGCCGTCCAGCACAAATCGAACCTC
AACACCAGGGAACGGGGGGGGTATGCCCCAATTTCTGAGGGGCGCGGCTC
TCCTTGCTTGAGTGCACCTCAGAAGTGACGGATTTGATCTCGTCCAGTAC
GCGAAGTACCGTACAACATGTACACAGCGATTTAGCGACGAGGACCATAC
TGTAGAATATACGTGGTTTAAATTGTAAACCGTAAGATCCCGGGCGTCTC
CCTTGAAATCCTCCCATGGCACGGTTTTTAGTTTCCAGTTTCTGGATAAT
GACAAGTGTGCGCAGTTTTGGAGCACAAACTCTGTAAGCTCAGCGTGAGA
ATATTATACGAATATACACCTGGAAAAATCCTACTATATAGTCGTGATGA
AGTCAGTGAGCCATTTGTTTTGGGAGGTGCTTGCACGGACACTAAGCACT
TGCTCTTATTTCGTCTTGTACGCACCGGCATAGCCTCAATTCCCCCCGGC
CGTCCCCGCGCTTTTTCCGTACACAGCTGCCGGCGCCAGACGCGGCAAGC
TTCCTCCGAGATGCGGCGATCTTGCTGCTCTCGTGTTTCCGCGAGACAAG
CGCCGCCGCGGCGAAAAAGGCGCAAGTTGCAGCTCGGAAGCGCATGCGGG
AGGATGCTGCGGATGGTGGGCGAGCGAGAAAGTCATCGCGGCGCTCGGCA
TGGTCCACTGACGGCAGCGTCCACGAGGGGTGATCACACACGTATGCAGC
GTTTTTTGTCGGATTGATATGACTGGAGGCAGTGTAAGTTCAGCGATGGG
CTTTGGACTATGAGGAATTGCTGGATTCACTGGAGCAGGTTTCGGTCCTC
CATGTAATTTCTCTGTCCGTAGCCAACCGGCGTGTGTCCGATGATCGCGA
CAACTCCCCCGCCATAGTCACACGGCTGGCCACAACGTTTTAGTGAATAT
CCGGTGTAGTTACTGTAATGTGGTGGATGCGAAAGAGGTGACGTAGCGGG
AAAGAAGAAGATTGAACTGGCGTACGCGAGGTTTTGTGTTGGGCGAAACG
AGTGCTTTTTTTCGCAACAAACAGGCGCTGCGAAGTTTGGACGATGAGAT
GGTGTGGGCAACGCCGGTGCTTTTTGGAGATAGCTGTTGCAGCGTCTGGA
CGATTGACGTCGGGTAACGTTGGTCTTTTTCTAGCGTAAGTGAGAGGTTT
CGTTGGGCAGAACGATGTTTTTTCGCGAAAAGCTGCTGTAGAGCCTAGGC
AAGTGGACGTGGGTCGAGGAATGTTTCGACGCATGCTAGGTGTCATTGGG
TAAAACCGCTTTCTTTTCTTTTTTGTTTTTCCCGAAAGCGGTGAAATCGA
AGTTTTCGGGTCGGGAATGTAAAGCGTGCGTGTTTCCGGCATGCGAGGGG
GGAAAGAAAATACGGACATGTGAATCAGATTACTGTTGGTACTACCTGGG
GACTTGTGAAAGAAGCTGTGTTGTGAGATGGTTTTCGGGCGCGCCGGTTT
ACGGCCGCACAGAGAAACAATTGTAGGGGGACAAGAGTGTCGTTGTTTTT
GCGAAAGCAATATGTTTTGGAGTGTCGGAGGAGGTTCTCAGTCAAGATGT
GGAGGCGCTTTGGCAACTACAAATGCAATATGAAGAAGAGATGGGTGGCC
GACGAATTACGCTGCTGGGGATTGCGGGAAGACTAACGTTGGTTTAATGG
AGCAGCGGGTTCACCACCGAGCCTAGCCGTGTCGCCAGCCCTATATACGA
TACACTTTGTGTAGGGTGGGAGGGGTTCTGGACTATTGCAATGTAGTGCT
GATGGTGTGCAGCACGTATTTTACAGCTGCATGCCCGTCAACTATGATGA
GCTACGGCAGAAATGTTGGCAGCCATCGTACATTCATGTGTCCGAGCACT
GCATGAAAGGATTTTGGCTGTCGTGTCGATGCTCTGGCGGTTGCAAACTG
TATACTGTATATTGTATATTGTATACACACTCAAGCGAGTACAAAATGGA
ACCCGGCATTGCACCGTTTACCCTATTACGTGGGGGGTGGATGCGAGGGG
GAAAAGGGGTTAATACAACCTTTGTGTGAACGGGGAAGACTAATAGGGTC
AGCAGGGGGCTTGTTTATATGCTAGTAGTGTTTTTTCGGTATAGACAGGA
CTATTAGAGTCACTACTGAAATGGAATTGATAATACTGTCGGGGCGTGCA
AATTATTCCACTTGTCGCTCCCACGGCCTTAACTAGGGTGAGGCGAAAGG
GCACGGTACCTTAATATTGAGGTGGCTTATCGGCTAGATTTGGGTACATG
CTGGATGTAATATGCAGAGCACTGTCCCGAATTATGTGATGGTAGCGGCG
GCACTCACGCAGGAGCCCTCTTCGTTGTTGTAAGATTACCACACGTACGT
ACGTACGTACTGCTGTAAAACGCCGCGCGAACACGTTCACATAGGTTTCG
CTTTACAGTGCAGTAGAGTACTGAGTAGAAGTGGTACAAGGGACAGCTAG
TTGTTAATTACTTGTAGCTGTTAATTTGTTTTCGAATGATTGTTTTTTGT
AGTTGTGGTGAAGGTGTAGGTATTCGTGTAGGTATGGATGCATGTGATGT
GC
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Coding sequence (CDS) from alignment at H-paniculata_contig1976:3217..6868-

>mRNA_H-paniculata_contig1976.5028.1 ID=mRNA_H-paniculata_contig1976.5028.1|Name=mRNA_H-paniculata_contig1976.5028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig1976:3217..6868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTGGTTGTCCAGGCGCTAGCAAAGATGGGAAGATGAAGCTGGTT
GTCCAGGCGCTAGCAAAGATGGGAAGATACTACGCGCGGATGCCGAGGCG
CGCCACGTGGGGAACGAAGCATGGCACACCAGCTCTCGAGAAGCTCTTGC
GCTCTCTCGCTCCGACGGTTGAACACATGGAGATACTACGCGCGGATGCC
GAGGCGCGCCACGTGGGGAACGAAGCATGGCACACCAGCTCTCGAGAAGC
TCTTGCGCTCTCTCGCTCCGACGGTTGAACACATGGAGCTGCCGGCGCCA
GACGCGGCAAGCTTCCTCCGAGATGCGGCGATCTTGCTGCTCTCGTGTTT
CCGCGAGACAAGCGCCGCCGCGGCGAAAAAGGCGCAAGTTGCAGCTCGGA
AGCGCATGCGGGAGGATGCTGCGGATGGTGGGCGAGCGAGAAAGTCATCG
CGGCGCTCGGCATGGTCCACTGACGGCAGCGTCCACGAGGGGTGACTGCC
GGCGCCAGACGCGGCAAGCTTCCTCCGAGATGCGGCGATCTTGCTGCTCT
CGTGTTTCCGCGAGACAAGCGCCGCCGCGGCGAAAAAGGCGCAAGTTGCA
GCTCGGAAGCGCATGCGGGAGGATGCTGCGGATGGTGGGCGAGCGAGAAA
GTCATCGCGGCGCTCGGCATGGTCCACTGACGGCAGCGTCCACGAGGGGT
GA
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