prot_H-paniculata_contig1974.5025.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1974.5025.1
Unique Nameprot_H-paniculata_contig1974.5025.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length250
Homology
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: A0A6H5JC42_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC42_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 4.180e-88
Identity = 139/205 (67.80%), Postives = 156/205 (76.10%), Query Frame = 0
Query:   48 ALLPCDWRYFAASVFYITSVCCVFSMASVASGESDARNWAFVRWLFIASLIILSAIWFGRIVHLLTWRLS---QRRQRIPRGALEARLQLRHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREPAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            +L+P   R F   +  I    CVFS+  V        NW  + W F  SL+++S     R+V+    R     +RRQRIPRGALEARLQL HPGIELGRLRLLLVDRDFTGEDYQALLDLDENN+ PS VGASEGEI+RNPSF+I EPA D+V KP+NC+ICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG
Sbjct:   40 SLIPLRSRRFVGLLLMI----CVFSLVQV-----GVLNWTLMAWGFFGSLLVVSLFRLVRLVNGYAIRSDTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNDVPSTVGASEGEIKRNPSFVIPEPAADSVVKPKNCSICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 235          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: A0A836CGW1_9STRA (Ubiquitin-protein ligase/ zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.130e-42
Identity = 73/122 (59.84%), Postives = 92/122 (75.41%), Query Frame = 0
Query:  129 EARLQLRHPGIELG-RLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREPAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            E+R+  RHP +  G RL LLL+DRDF G+DYQ LL+LD +N AP+ VGA+E EIRRNP F ++E     +A  R+C+ICL+ F   E VRI+PCLHQ+H+ECID WLR NA CP+CKFPAVG
Sbjct:  124 ESRMLARHPQLANGGRLALLLMDRDFDGDDYQMLLELDADNVAPAAVGATEAEIRRNPCFTVQESDAKQLA--RSCSICLHTFCAGEEVRIVPCLHQYHSECIDEWLRMNATCPICKFPAVG 243          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: W7T4H0_9STRA (Zinc finger, RING-type n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4H0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.750e-25
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 0
Query:  127 ALEARLQLRHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNE-APSRVGASEGEIRRNPSFLIREPAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFH-TECIDPWLRQNAICPVCKF 245
            A+E  + L   G +  RL+L+L+DRDF+ EDY+ L  LDE+ + A   +GA++ E+ R P++++     D   K   C ICL  F   E VRI+PCLHQFH +EC DPWLR+   CPVCKF
Sbjct:   85 AVEEGIALSRRGTDSSRLQLMLMDRDFSSEDYEVLSRLDEDEQDACHLLGATDAELERLPTYIV-----DTETKLNKCFICLNDFLKGEVVRILPCLHQFHQSECCDPWLRRKMECPVCKF 200          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: L1IY96_GUITC (RING-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IY96_GUITC)

HSP 1 Score: 101 bits (251), Expect = 1.620e-23
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 0
Query:  139 IELGRLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREPAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCK 244
            I    LRL L++RDFT  DY+ALL LDE   A    GA++  I R P + + E      +K   CT+CL P    ++ RI+PCLHQFH +CID WLR N+ CPVCK
Sbjct:   22 ISQDHLRLSLINRDFTSNDYEALLSLDEA--AGRSRGANQDRIDRLPCYTVAE-----GSKAPPCTVCLDPLNVSDQARILPCLHQFHKDCIDRWLRDNSTCPVCK 120          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: A0A6G0WUI5_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUI5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.910e-23
Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 0
Query:  144 LRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREP--APDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            + LLL DRDF   DY+ LL LDENN   S  GA++ EI R P   I E   +   V +   C+ICL       + R++PC H+FH  CIDPWL+  A CP+CKFPA+G
Sbjct:   92 INLLLTDRDFDSNDYERLLLLDENNVKKSH-GATDFEIDRLPVVTISESMLSKGGVEEDLKCSICLEELSVGSQARMVPCFHRFHPACIDPWLKDKAECPICKFPAIG 198          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: H3GXJ4_PHYRM (RING-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXJ4_PHYRM)

HSP 1 Score: 101 bits (252), Expect = 6.160e-23
Identity = 53/134 (39.55%), Postives = 83/134 (61.94%), Query Frame = 0
Query:  116 LSQRRQRIPRGALEARLQLRHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREPAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            +  ++QR PRG ++    L +  ++   L+LL+ +RDF   DY+ L+ L+  NE   R GAS  +I++ P   + E +    ++  +C +CL  F+   RVR++PC H+FH ECIDPWL++ A CPVCKFPA+ 
Sbjct:   59 MQNQQQRRPRGVMQMSRAL-YDQLDGEMLQLLMSNRDFDSNDYERLMRLEALNER-KREGASPHQIQQLPIVTVTE-SMLQASENASCAVCLSTFQLDGRVRMMPCFHRFHQECIDPWLQEKASCPVCKFPAIA 189          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: W2R565_PHYPN (RING-type domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2R565_PHYPN)

HSP 1 Score: 100 bits (249), Expect = 1.430e-22
Identity = 51/136 (37.50%), Postives = 83/136 (61.03%), Query Frame = 0
Query:  117 SQRRQRIPRGALEARLQLRHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREP---APDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            +QRR++ PRG ++    L +  ++   L+LL+ +RDF   DY+ L+ L+  NE  +  GA+  +I++ P   + E    A +N      CT+CL  F+    VR++PC H+FH +CIDPWL++  +CP+CKFPA+ 
Sbjct:   53 NQRRRQAPRGVMQMSRAL-YEQLDGDMLQLLMSNRDFDSNDYERLMRLEALNERRNE-GATPQQIQQLPIVAVTESMLKASENAC----CTVCLSAFQVNSPVRMMPCFHRFHPQCIDPWLQEKGLCPICKFPAIA 182          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: A0A485LC69_9STRA (Aste57867_17819 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC69_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.060e-22
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 0
Query:  144 LRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREPAPDN-----VAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            + LLL DRDF   DY+ LL LDENN   S  GA++ EI R P   + E    +     V +   C+ICL       + R++PC H+FH +CIDPWL+  A CP+CKFPA+G
Sbjct:  102 INLLLTDRDFDSNDYEQLLMLDENNVKKSH-GATDVEIDRLPVVTVSESMLQSTNKGGVPEDLKCSICLEDLVVGSQARMVPCFHRFHPQCIDPWLKDKAECPICKFPAIG 211          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: A0A225WZ07_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ07_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.390e-22
Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 0
Query:  117 SQRRQRIPRGALEARLQLRHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIRE---PAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
            +QRRQ+ PRG ++    L +  ++   L+LL+ +RDF   DY+ L+ L+  NE  +  GA+  +IR+ P   + E    A +N      CT+CL  F+   +VR++PC H+FH ECIDPWL + A CP+CKFPA+ 
Sbjct:   61 NQRRQQ-PRGVMQMSRAL-YEQMDGDMLQLLMSNRDFDSNDYERLMRLEALNERRNE-GATPQQIRQLPIVSVTENMLEASENAC----CTVCLSAFQVDSQVRMMPCFHRFHPECIDPWLHEKATCPICKFPAIA 189          
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Match: G5AET2_PHYSP (RING-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5AET2_PHYSP)

HSP 1 Score: 99.4 bits (246), Expect = 4.930e-22
Identity = 53/136 (38.97%), Postives = 83/136 (61.03%), Query Frame = 0
Query:  117 SQRRQRIPRGALEARLQLRHPGIELGRLRLLLVDRDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIRE---PAPDNVAKPRNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG 249
             Q+R++ PRG ++    L +  ++   L+LLL +RDF   DY+ L+ L+  NE     GA+  +I++ P   + E    A +N +    CT+CL  F+    VR++PC H+FH ECIDPWL++ A+CP+CKFPA+ 
Sbjct:   62 QQQRRQAPRGVMQMSRAL-YEQLDGEMLQLLLSNRDFDSNDYERLMRLETLNER-RHEGATPQQIQQLPVVAVTEGMLQASENAS----CTVCLSTFELGGCVRMMPCFHRFHPECIDPWLQEKALCPICKFPAIA 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1974.5025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC42_9PHAE4.180e-8867.80RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CGW1_9STRA3.130e-4259.84Ubiquitin-protein ligase/ zinc ion binding protein... [more]
W7T4H0_9STRA3.750e-2546.28Zinc finger, RING-type n=2 Tax=Nannochloropsis gad... [more]
L1IY96_GUITC1.620e-2348.11RING-type domain-containing protein n=1 Tax=Guilla... [more]
A0A6G0WUI5_9STRA3.910e-2347.22RING-type domain-containing protein n=1 Tax=Aphano... [more]
H3GXJ4_PHYRM6.160e-2339.55RING-type domain-containing protein n=1 Tax=Phytop... [more]
W2R565_PHYPN1.430e-2237.50RING-type domain-containing protein n=10 Tax=Phyto... [more]
A0A485LC69_9STRA2.060e-2245.05Aste57867_17819 protein n=1 Tax=Aphanomyces stella... [more]
A0A225WZ07_9STRA2.390e-2240.44E3 ubiquitin-protein ligase n=1 Tax=Phytophthora m... [more]
G5AET2_PHYSP4.930e-2238.97RING-type domain-containing protein n=4 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 203..243
e-value: 2.1E-7
score: 40.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 202..244
e-value: 2.5E-12
score: 46.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 203..244
score: 12.46
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 163..247
e-value: 2.1E-18
score: 67.7
NoneNo IPR availablePANTHERPTHR45931FAMILY NOT NAMEDcoord: 133..248
NoneNo IPR availablePANTHERPTHR45931:SF3E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATEDcoord: 133..248
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 113..249
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..112
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 202..246
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
NoneNo IPR availableTMHMMTMhelixcoord: 91..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1974contigH-paniculata_contig1974:15336..20518 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1974.5025.1mRNA_H-paniculata_contig1974.5025.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1974 14930..21042 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1974.5025.1 ID=prot_H-paniculata_contig1974.5025.1|Name=mRNA_H-paniculata_contig1974.5025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MDEIMPAPTAGINATAMEEGEPSSINSAHAEEGRRRRVRSAQRRALRALL
PCDWRYFAASVFYITSVCCVFSMASVASGESDARNWAFVRWLFIASLIIL
SAIWFGRIVHLLTWRLSQRRQRIPRGALEARLQLRHPGIELGRLRLLLVD
RDFTGEDYQALLDLDENNEAPSRVGASEGEIRRNPSFLIREPAPDNVAKP
RNCTICLYPFKPRERVRIIPCLHQFHTECIDPWLRQNAICPVCKFPAVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD