prot_H-paniculata_contig19739.5023.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19739.5023.1
Unique Nameprot_H-paniculata_contig19739.5023.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length428
Homology
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BLAST of mRNA_H-paniculata_contig19739.5023.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-12
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 0 
Query:  189 QKDYMRRIKEVGLRNRWQEVRSLLDEMRTAEVPRNVFVYNAAISALARCRRPADAELLLDEMLDTENLAPDLISYNSAINAHARLGDLASARRLLELM 286
            QKDY+  IK  G R  W+EV +L+ EM    V  NV++YN AI+A+ARC RP +AE LL  ML+ +++APD IS               +ARRLL  M
Sbjct:   22 QKDYLHLIKAAGFRGNWREVAALVSEMGGKGVEGNVYIYNTAIAAMARCGRPREAEALLTVMLERDSIAPDTISXXXXXXXXXXXXXXDAARRLLGRM 119
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BLAST of mRNA_H-paniculata_contig19739.5023.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.050e-6
Identity = 49/172 (28.49%), Postives = 78/172 (45.35%), Query Frame = 0 
Query:  156 DGNRKRNIASGDSGGGGQGTRQRKGNTTSVVASQKDYMRRIKEVGLRNRWQEVRSLLDEMRTAEVPR-NVFVYNAAISALARCRRPADAELLLDEMLDTENLA-----------------------------------PDLISYNSAINAHARLGDLASARRLLELMRSRFV 291
            +GN  R+  +  S  G +     + +   V   QK +++R+ E+GLR R +EV  L+++++    P  N+++YNA I+ALARC R   A  +LD M  + N A                                   PD+ SY++AI A    G+   A  LL +MR + V
Sbjct:  205 EGNDGRSEGTASSSSGAKSEADAQVDAALVKVRQKTFLKRVVELGLRGRAKEVLDLMEDVKRERFPPFNIYMYNACITALARCGRWRQALAILDHMRFSANAAEAAAAATVDTALKADPAAGVDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGV 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19739.5023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI48_ECTSI1.080e-1244.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KUL4_9PHAE2.050e-628.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 318..387
e-value: 4.1E-11
score: 44.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 180..311
e-value: 4.2E-31
score: 109.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 261..295
e-value: 1.3E-6
score: 26.2
coord: 226..259
e-value: 1.1E-4
score: 20.1
coord: 331..364
e-value: 1.6E-7
score: 29.1
coord: 296..329
e-value: 5.8E-4
score: 17.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 282..340
e-value: 2.8E-11
score: 43.3
coord: 210..269
e-value: 6.8E-4
score: 19.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 329..363
score: 11.542
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..328
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 5.316
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 223..257
score: 9.153
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 10.885
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 204..287
coord: 257..374
coord: 202..266
NoneNo IPR availablePANTHERPTHR46128:SF1coord: 204..287
coord: 257..374
coord: 202..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19739contigH-paniculata_contig19739:616..2508 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19739.5023.1mRNA_H-paniculata_contig19739.5023.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19739 602..2589 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19739.5023.1 ID=prot_H-paniculata_contig19739.5023.1|Name=mRNA_H-paniculata_contig19739.5023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=428bp
MQGPSAGTQPAFISIPHILWQHKSSPATLRTDVLYRCDTASGTVRAIVAV
TRCGSRLTHCCCRCGRQLCTGGGGPCLGINSNNGAVHSYRAPSTTSILRE
GSSFDSGGHGPQYRRRRVRPLGLGVGSDSPSPPRGAPHSPDDEMRHQQKT
TARRVDGNRKRNIASGDSGGGGQGTRQRKGNTTSVVASQKDYMRRIKEVG
LRNRWQEVRSLLDEMRTAEVPRNVFVYNAAISALARCRRPADAELLLDEM
LDTENLAPDLISYNSAINAHARLGDLASARRLLELMRSRFVKPDVVTFNT
LADAAAKKGDPVAAAEILSVMAEEGVTPDMITYNACLAACSRKGDLPRAI
TLLDLMMEDGLEPDQRSYSAVISAAGRCKRVSLFARARVPYSVVIKGLLL
LVIPGNPGRFPIHMAPHPPLHVLRSDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat