mRNA_H-paniculata_contig19739.5023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19739.5023.1
Unique NamemRNA_H-paniculata_contig19739.5023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig19739.5023.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.380e-12
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 3 
Query:  579 QKDYMRRIKEVGLRNRWQEVRSLLDEMRTAEVPRNVFVYNAAISALARCRRPADAELLLDEMLDTENLAPDLISYNSAINAHARLGDLASARRLLELM 872
            QKDY+  IK  G R  W+EV +L+ EM    V  NV++YN AI+A+ARC RP +AE LL  ML+ +++APD IS               +ARRLL  M
Sbjct:   22 QKDYLHLIKAAGFRGNWREVAALVSEMGGKGVEGNVYIYNTAIAAMARCGRPREAEALLTVMLERDSIAPDTISXXXXXXXXXXXXXXDAARRLLGRM 119
[Close]
BLAST of mRNA_H-paniculata_contig19739.5023.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.400e-6
Identity = 49/172 (28.49%), Postives = 78/172 (45.35%), Query Frame = 3 
Query:  480 DGNRKRNIASGDSGGGGQGTRQRKGNTTSVVASQKDYMRRIKEVGLRNRWQEVRSLLDEMRTAEVPR-NVFVYNAAISALARCRRPADAELLLDEMLDTENLA-----------------------------------PDLISYNSAINAHARLGDLASARRLLELMRSRFV 887
            +GN  R+  +  S  G +     + +   V   QK +++R+ E+GLR R +EV  L+++++    P  N+++YNA I+ALARC R   A  +LD M  + N A                                   PD+ SY++AI A    G+   A  LL +MR + V
Sbjct:  205 EGNDGRSEGTASSSSGAKSEADAQVDAALVKVRQKTFLKRVVELGLRGRAKEVLDLMEDVKRERFPPFNIYMYNACITALARCGRWRQALAILDHMRFSANAAEAAAAATVDTALKADPAAGVDGGAAMSPPAPAAVRPDVFSYSAAITACGNCGEWRRALALLRVMREQGV 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19739.5023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI48_ECTSI1.380e-1244.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KUL4_9PHAE2.400e-628.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19739contigH-paniculata_contig19739:602..2589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog2880.D8LI48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1379
Cds size1284
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19739.5023.1prot_H-paniculata_contig19739.5023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19739 616..2508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929492.3101985-UTR-H-paniculata_contig19739:601..6151622929492.3101985-UTR-H-paniculata_contig19739:601..615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19739 602..615 +
1691480885.242829-UTR-H-paniculata_contig19739:601..6151691480885.242829-UTR-H-paniculata_contig19739:601..615Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19739 602..615 +
1622929492.3803725-UTR-H-paniculata_contig19739:2508..25891622929492.3803725-UTR-H-paniculata_contig19739:2508..2589Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19739 2509..2589 +
1691480885.2734375-UTR-H-paniculata_contig19739:2508..25891691480885.2734375-UTR-H-paniculata_contig19739:2508..2589Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19739 2509..2589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929492.3443394-CDS-H-paniculata_contig19739:615..15631622929492.3443394-CDS-H-paniculata_contig19739:615..1563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19739 616..1563 +
1691480885.252771-CDS-H-paniculata_contig19739:615..15631691480885.252771-CDS-H-paniculata_contig19739:615..1563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19739 616..1563 +
1622929492.3604572-CDS-H-paniculata_contig19739:2172..25081622929492.3604572-CDS-H-paniculata_contig19739:2172..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19739 2173..2508 +
1691480885.2652156-CDS-H-paniculata_contig19739:2172..25081691480885.2652156-CDS-H-paniculata_contig19739:2172..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19739 2173..2508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19739.5023.1

>prot_H-paniculata_contig19739.5023.1 ID=prot_H-paniculata_contig19739.5023.1|Name=mRNA_H-paniculata_contig19739.5023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=428bp
MQGPSAGTQPAFISIPHILWQHKSSPATLRTDVLYRCDTASGTVRAIVAV
TRCGSRLTHCCCRCGRQLCTGGGGPCLGINSNNGAVHSYRAPSTTSILRE
GSSFDSGGHGPQYRRRRVRPLGLGVGSDSPSPPRGAPHSPDDEMRHQQKT
TARRVDGNRKRNIASGDSGGGGQGTRQRKGNTTSVVASQKDYMRRIKEVG
LRNRWQEVRSLLDEMRTAEVPRNVFVYNAAISALARCRRPADAELLLDEM
LDTENLAPDLISYNSAINAHARLGDLASARRLLELMRSRFVKPDVVTFNT
LADAAAKKGDPVAAAEILSVMAEEGVTPDMITYNACLAACSRKGDLPRAI
TLLDLMMEDGLEPDQRSYSAVISAAGRCKRVSLFARARVPYSVVIKGLLL
LVIPGNPGRFPIHMAPHPPLHVLRSDD*
back to top

mRNA from alignment at H-paniculata_contig19739:602..2589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19739.5023.1 ID=mRNA_H-paniculata_contig19739.5023.1|Name=mRNA_H-paniculata_contig19739.5023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1988bp|location=Sequence derived from alignment at H-paniculata_contig19739:602..2589+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAATGTAAAGCCATGCAGGGTCCATCTGCTGGGACGCAACCAGCGTTC
ATCAGCATCCCACATATTTTATGGCAACATAAGTCTTCCCCCGCAACGCT
GAGGACTGATGTCCTCTATCGCTGTGATACTGCGTCAGGAACAGTGCGGG
CAATTGTAGCAGTAACCAGGTGCGGCTCTCGTCTCACACACTGTTGTTGT
CGTTGTGGGCGGCAATTATGCACTGGAGGCGGCGGCCCATGCCTCGGCAT
TAACAGCAACAATGGCGCTGTGCATAGCTATCGAGCTCCGTCTACAACAT
CGATACTAAGGGAGGGGAGTTCGTTTGATTCCGGCGGCCATGGGCCCCAA
TATCGAAGACGACGTGTTCGTCCTCTCGGCTTGGGCGTGGGGTCGGATTC
GCCTTCACCTCCCCGAGGCGCACCGCACAGCCCGGATGACGAGATGAGGC
ATCAACAGAAGACCACCGCTAGAAGAGTAGATGGCAACAGAAAGAGAAAC
ATTGCAAGTGGCGATAGCGGTGGCGGTGGACAAGGCACCCGCCAGCGCAA
GGGTAACACTACTAGCGTGGTTGCTTCCCAGAAGGACTACATGCGTCGGA
TAAAGGAAGTGGGGTTGCGAAACCGATGGCAGGAGGTGCGGAGCCTGCTC
GACGAGATGCGAACGGCAGAGGTGCCCAGGAATGTGTTCGTGTACAACGC
GGCCATCTCGGCGCTAGCGCGCTGTCGCAGGCCCGCGGACGCCGAGTTGC
TGCTGGACGAGATGCTCGATACGGAAAACCTGGCACCAGATTTGATATCT
TACAACTCGGCGATCAACGCACACGCGCGGCTCGGAGACCTCGCTTCCGC
CCGTCGTCTGTTGGAGCTGATGCGCAGCCGGTTTGTGAAGCCGGACGTTG
TTACATTTAATACGCTCGCGGATGCGGCAGCGAAGAAGGGGGATCCTGTC
GCGGCTGCGGAGGTGATTTGTTCTGAGTGACCAAAAGATAGGAATCAATA
ACGGGCGGGGTGGGCCGGGGAGTGTTGTGTGCACAAGAGTTGGTGACGAT
TCTGTATTACGATGAAGCACGCGTGTGGACCTCTTGGACATATTGATTGC
AGGACATGAGGAAACAAACCCGACTGTCAGTACGGTTCAGCAGTTGCTGC
AGCAAATGTGATGAGTGTTGAAGCTCCAGATATTATGTACAGTGTACGAA
GCGCTGGGAAACATCTACTGCCCGGGGCGGGTGGCTGGCTCAATTTGTCA
TTCTCCTCGTTTCCAGATTAGTTATCTCCCGCGCTCTTGGGCATTGTCTC
GGGTGACTGGCTCAAGTTGTCGTTCGCGTTTTTTCCAGATTAGAGTTATC
TCCCGCGCTCTTTGGCATTGTCTCGGAAATGCCGAATAGCGATACTGTAT
GGAGGGTGGACACGGTGGTTCCTGATCAACTCTCTCTCTCTCTCTCTCTC
TCCCCCTCTTCCTTTCCCTTTCTCCCTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTCTTGTTGTTGTTCTTCTTGTTCTTCTTGTTCTTCTTGTTGTT
CATCTCTCTACGACACCTCAGATTCTTAGCGTCATGGCAGAGGAAGGCGT
AACGCCAGATATGATAACGTACAATGCGTGCCTTGCGGCGTGCAGTCGAA
AAGGCGACCTACCCAGGGCGATTACGCTACTGGATCTCATGATGGAAGAC
GGCCTCGAGCCAGACCAGAGGAGCTACTCCGCTGTCATTTCCGCCGCTGG
AAGGTGTAAGCGCGTGTCACTCTTCGCCAGGGCTCGTGTACCGTACAGTG
TCGTGATCAAGGGCTTACTGTTGTTGGTTATTCCGGGAAATCCTGGAAGA
TTCCCGATCCACATGGCGCCACATCCCCCTTTGCACGTGTTAAGGTCTGA
CGATTAAGGCACACATGCAACCCTGCCTACCAATCATGACGATGGACACT
TCTTGGCGACCCTTATCTGATTGCCAGTATGACTGCTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19739:602..2589+

>mRNA_H-paniculata_contig19739.5023.1 ID=mRNA_H-paniculata_contig19739.5023.1|Name=mRNA_H-paniculata_contig19739.5023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2568bp|location=Sequence derived from alignment at H-paniculata_contig19739:602..2589+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGTCCATCTGCTGGGACGCAACCAGCGTTCATCAGCATCCCACA
TATTTTATGGCAACATAAGTCTTCCCCCGCAACGCTGAGGACTGATGTCC
TCTATCGCTGTGATACTGCGTCAGGAACAGTGCGGGCAATTGTAGCAGTA
ACCAGGTGCGGCTCTCGTCTCACACACTGTTGTTGTCGTTGTGGGCGGCA
ATTATGCACTGGAGGCGGCGGCCCATGCCTCGGCATTAACAGCAACAATG
GCGCTGTGCATAGCTATCGAGCTCCGTCTACAACATCGATACTAAGGGAG
GGGAGTTCGTTTGATTCCGGCGGCCATGGGCCCCAATATCGAAGACGACG
TGTTCGTCCTCTCGGCTTGGGCGTGGGGTCGGATTCGCCTTCACCTCCCC
GAGGCGCACCGCACAGCCCGGATGACGAGATGAGGCATCAACAGAAGACC
ACCGCTAGAAGAGTAGATGGCAACAGAAAGAGAAACATTGCAAGTGGCGA
TAGCGGTGGCGGTGGACAAGGCACCCGCCAGCGCAAGGGTAACACTACTA
GCGTGGTTGCTTCCCAGAAGGACTACATGCGTCGGATAAAGGAAGTGGGG
TTGCGAAACCGATGGCAGGAGGTGCGGAGCCTGCTCGACGAGATGCGAAC
GGCAGAGGTGCCCAGGAATGTGTTCGTGTACAACGCGGCCATCTCGGCGC
TAGCGCGCTGTCGCAGGCCCGCGGACGCCGAGTTGCTGCTGGACGAGATG
CTCGATACGGAAAACCTGGCACCAGATTTGATATCTTACAACTCGGCGAT
CAACGCACACGCGCGGCTCGGAGACCTCGCTTCCGCCCGTCGTCTGTTGG
AGCTGATGCGCAGCCGGTTTGTGAAGCCGGACGTTGTTACATTTAATACG
CTCGCGGATGCGGCAGCGAAGAAGGGGGATCCTGTCGCGGCTGCGGAGAT
GCAGGGTCCATCTGCTGGGACGCAACCAGCGTTCATCAGCATCCCACATA
TTTTATGGCAACATAAGTCTTCCCCCGCAACGCTGAGGACTGATGTCCTC
TATCGCTGTGATACTGCGTCAGGAACAGTGCGGGCAATTGTAGCAGTAAC
CAGGTGCGGCTCTCGTCTCACACACTGTTGTTGTCGTTGTGGGCGGCAAT
TATGCACTGGAGGCGGCGGCCCATGCCTCGGCATTAACAGCAACAATGGC
GCTGTGCATAGCTATCGAGCTCCGTCTACAACATCGATACTAAGGGAGGG
GAGTTCGTTTGATTCCGGCGGCCATGGGCCCCAATATCGAAGACGACGTG
TTCGTCCTCTCGGCTTGGGCGTGGGGTCGGATTCGCCTTCACCTCCCCGA
GGCGCACCGCACAGCCCGGATGACGAGATGAGGCATCAACAGAAGACCAC
CGCTAGAAGAGTAGATGGCAACAGAAAGAGAAACATTGCAAGTGGCGATA
GCGGTGGCGGTGGACAAGGCACCCGCCAGCGCAAGGGTAACACTACTAGC
GTGGTTGCTTCCCAGAAGGACTACATGCGTCGGATAAAGGAAGTGGGGTT
GCGAAACCGATGGCAGGAGGTGCGGAGCCTGCTCGACGAGATGCGAACGG
CAGAGGTGCCCAGGAATGTGTTCGTGTACAACGCGGCCATCTCGGCGCTA
GCGCGCTGTCGCAGGCCCGCGGACGCCGAGTTGCTGCTGGACGAGATGCT
CGATACGGAAAACCTGGCACCAGATTTGATATCTTACAACTCGGCGATCA
ACGCACACGCGCGGCTCGGAGACCTCGCTTCCGCCCGTCGTCTGTTGGAG
CTGATGCGCAGCCGGTTTGTGAAGCCGGACGTTGTTACATTTAATACGCT
CGCGGATGCGGCAGCGAAGAAGGGGGATCCTGTCGCGGCTGCGGAGATTC
TTAGCGTCATGGCAGAGGAAGGCGTAACGCCAGATATGATAACGTACAAT
GCGTGCCTTGCGGCGTGCAGTCGAAAAGGCGACCTACCCAGGGCGATTAC
GCTACTGGATCTCATGATGGAAGACGGCCTCGAGCCAGACCAGAGGAGCT
ACTCCGCTGTCATTTCCGCCGCTGGAAGGTGTAAGCGCGTGTCACTCTTC
GCCAGGGCTCGTGTACCGTACAGTGTCGTGATCAAGGGCTTACTGTTGTT
GGTTATTCCGGGAAATCCTGGAAGATTCCCGATCCACATGGCGCCACATC
CCCCTTTGCACGTGTTAAGGTCTGACGATTAAATTCTTAGCGTCATGGCA
GAGGAAGGCGTAACGCCAGATATGATAACGTACAATGCGTGCCTTGCGGC
GTGCAGTCGAAAAGGCGACCTACCCAGGGCGATTACGCTACTGGATCTCA
TGATGGAAGACGGCCTCGAGCCAGACCAGAGGAGCTACTCCGCTGTCATT
TCCGCCGCTGGAAGGTGTAAGCGCGTGTCACTCTTCGCCAGGGCTCGTGT
ACCGTACAGTGTCGTGATCAAGGGCTTACTGTTGTTGGTTATTCCGGGAA
ATCCTGGAAGATTCCCGATCCACATGGCGCCACATCCCCCTTTGCACGTG
TTAAGGTCTGACGATTAA
back to top