mRNA_H-paniculata_contig19737.5022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19737.5022.1
Unique NamemRNA_H-paniculata_contig19737.5022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19737.5022.1 vs. uniprot
Match: D7G0M2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.770e-13
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MREAIADQLANEDYQRFLSKVPRVEGVWDDHDYG 102
            M+EA + QLANEDYQRFL+KVPRVEGVWDDHDYG
Sbjct:   79 MKEAFSKQLANEDYQRFLAKVPRVEGVWDDHDYG 112
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BLAST of mRNA_H-paniculata_contig19737.5022.1 vs. uniprot
Match: A0A6H5JL56_9PHAE (PhoD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL56_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 6.630e-13
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MREAIADQLANEDYQRFLSKVPRVEGVWDDHDYG 102
            MREA + QLANEDYQRFL+KVPRVEGVWDDHDYG
Sbjct:   79 MREAFSKQLANEDYQRFLAKVPRVEGVWDDHDYG 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19737.5022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0M2_ECTSI1.770e-1385.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL56_9PHAE6.630e-1388.24PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19737contigH-paniculata_contig19737:736..846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog2880.D7G0M2
KEGG rclassRC00017
KEGG koko:K01113
KEGG ReactionR04620
KEGG Pathwayko00790,ko01100,ko02020,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.PhoD-like phosphatase
EggNOG OGs2QTGZ@2759,COG3540@1
EC3.1.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size111
Cds size111
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929492.2648087-CDS-H-paniculata_contig19737:735..8461622929492.2648087-CDS-H-paniculata_contig19737:735..846Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19737 736..846 -
1691480885.2272933-CDS-H-paniculata_contig19737:735..8461691480885.2272933-CDS-H-paniculata_contig19737:735..846Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19737 736..846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19737.5022.1prot_H-paniculata_contig19737.5022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19737 736..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19737.5022.1

>prot_H-paniculata_contig19737.5022.1 ID=prot_H-paniculata_contig19737.5022.1|Name=mRNA_H-paniculata_contig19737.5022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MREAIADQLANEDYQRFLSKVPRVEGVWDDHDYGGE*
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mRNA from alignment at H-paniculata_contig19737:736..846-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19737.5022.1 ID=mRNA_H-paniculata_contig19737.5022.1|Name=mRNA_H-paniculata_contig19737.5022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig19737:736..846- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAGGCCATCGCCGACCAACTGGCCAACGAGGATTACCAAAGGTT
CTTGTCCAAGGTTCCCAGGGTGGAAGGTGTGTGGGACGACCACGACTATG
GTGGTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19737:736..846-

>mRNA_H-paniculata_contig19737.5022.1 ID=mRNA_H-paniculata_contig19737.5022.1|Name=mRNA_H-paniculata_contig19737.5022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig19737:736..846- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGAGGCCATCGCCGACCAACTGGCCAACGAGGATTACCAAAGGTT
CTTGTCCAAGGTTCCCAGGGTGGAAGGTGTGTGGGACGACCACGACTATG
GTGGTGAGTGAATGAGGGAGGCCATCGCCGACCAACTGGCCAACGAGGAT
TACCAAAGGTTCTTGTCCAAGGTTCCCAGGGTGGAAGGTGTGTGGGACGA
CCACGACTATGGTGGTGAGTGA
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