mRNA_H-paniculata_contig19695.5011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19695.5011.1
Unique NamemRNA_H-paniculata_contig19695.5011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19695.5011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19695contigH-paniculata_contig19695:4174..4830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size657
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929490.6369822-CDS-H-paniculata_contig19695:4173..45121622929490.6369822-CDS-H-paniculata_contig19695:4173..4512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19695 4174..4512 +
1691480884.3678222-CDS-H-paniculata_contig19695:4173..45121691480884.3678222-CDS-H-paniculata_contig19695:4173..4512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19695 4174..4512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929490.6542614-UTR-H-paniculata_contig19695:4512..48301622929490.6542614-UTR-H-paniculata_contig19695:4512..4830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19695 4513..4830 +
1691480884.380002-UTR-H-paniculata_contig19695:4512..48301691480884.380002-UTR-H-paniculata_contig19695:4512..4830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19695 4513..4830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19695.5011.1prot_H-paniculata_contig19695.5011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19695 4174..4512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19695.5011.1

>prot_H-paniculata_contig19695.5011.1 ID=prot_H-paniculata_contig19695.5011.1|Name=mRNA_H-paniculata_contig19695.5011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
DGSPAGRNEARADKGYRQERRSRAAVEASILHGSHHSPGFSRTHTFIPPW
NASMTEIVRSGKQPELHKHAPRYNAVGGFIRLNNLCLTPPAARICFFRVA
SGTGQEPPRSTV*
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mRNA from alignment at H-paniculata_contig19695:4174..4830+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19695.5011.1 ID=mRNA_H-paniculata_contig19695.5011.1|Name=mRNA_H-paniculata_contig19695.5011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=657bp|location=Sequence derived from alignment at H-paniculata_contig19695:4174..4830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGATCACCAGCAGGTAGAAACGAGGCCAGGGCTGATAAAGGATATCG
ACAGGAAAGACGTTCAAGAGCAGCGGTGGAAGCATCAATCCTTCACGGAT
CCCATCATTCCCCGGGATTCAGTCGTACACATACCTTCATCCCGCCGTGG
AACGCGAGTATGACCGAGATCGTTAGGTCGGGTAAGCAACCCGAACTGCA
CAAGCATGCTCCACGATATAATGCGGTCGGTGGGTTCATACGTCTTAATA
ATCTCTGTCTAACCCCCCCAGCTGCCCGCATCTGCTTCTTCAGGGTCGCG
TCTGGCACAGGGCAAGAACCTCCTCGTTCGACGGTATGACATGCGGGTCG
AACTCTTTGCGGAGGATCTCGAGGTCCCCTTCGAGCTCCTCCTCGGTTTG
TCTCGTGTTGATGCCCAAACCGGAGCGAGCTGTTGTTCAAGGGCGGTGCC
TCCGTCGATGAGAACGTCGAGGTGCCTCGGGCCGCCCTGGCGCAACCGTA
CGCCCGTCACACGTTGTTTTGTCTTGTCACTTTGCCAGTACATATCGGCG
TAGTCCTTTCCGTTCGCAAGATGGAGAAACATGCCACGGACCTACGCCCG
AACGTGTAGGGTAGCTCGTGTACTGAGCATGACTGGAAGTCTAGTCAGAG
GTCTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig19695:4174..4830+

>mRNA_H-paniculata_contig19695.5011.1 ID=mRNA_H-paniculata_contig19695.5011.1|Name=mRNA_H-paniculata_contig19695.5011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig19695:4174..4830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGATCACCAGCAGGTAGAAACGAGGCCAGGGCTGATAAAGGATATCG
ACAGGAAAGACGTTCAAGAGCAGCGGTGGAAGCATCAATCCTTCACGGAT
CCCATCATTCCCCGGGATTCAGTCGTACACATACCTTCATCCCGCCGTGG
AACGCGAGTATGACCGAGATCGTTAGGTCGGGTAAGCAACCCGAACTGCA
CAAGCATGCTCCACGATATAATGCGGTCGGTGGGTTCATACGTCTTAATA
ATCTCTGTCTAACCCCCCCAGCTGCCCGCATCTGCTTCTTCAGGGTCGCG
TCTGGCACAGGGCAAGAACCTCCTCGTTCGACGGTATGAGATGGATCACC
AGCAGGTAGAAACGAGGCCAGGGCTGATAAAGGATATCGACAGGAAAGAC
GTTCAAGAGCAGCGGTGGAAGCATCAATCCTTCACGGATCCCATCATTCC
CCGGGATTCAGTCGTACACATACCTTCATCCCGCCGTGGAACGCGAGTAT
GACCGAGATCGTTAGGTCGGGTAAGCAACCCGAACTGCACAAGCATGCTC
CACGATATAATGCGGTCGGTGGGTTCATACGTCTTAATAATCTCTGTCTA
ACCCCCCCAGCTGCCCGCATCTGCTTCTTCAGGGTCGCGTCTGGCACAGG
GCAAGAACCTCCTCGTTCGACGGTATGA
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