mRNA_H-paniculata_contig1969.5009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM) HSP 1 Score: 166 bits (421), Expect = 3.480e-45 Identity = 103/275 (37.45%), Postives = 152/275 (55.27%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKVDEF-KHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +++ E KH +S+RF M DLG L LG+E++ R +G T + K F + + P+ G L+ + E C +R +V LMY TRPD+A A ++ DPC + KR+ R L P G+ F + + G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V SSTEA+
Sbjct: 35 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 303
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 165 bits (418), Expect = 3.860e-43 Identity = 102/273 (37.36%), Postives = 151/273 (55.31%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRRE-KVDEFKHNISRRFRMKDLGSLSCVLGIEV--RRDRSN---GVPTTVEEKGEIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSEHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
RLR+S+YGLKQ+ R N+ D L +G ++T PC+Y + GE ++AVYVDD+++AG+ + K++E K ++ +F+MKD+G L LG++V + D G + E F ES+ P + G L Q + ++ V L+Y ST TRPDIAYA AR DP E + KRI R L+ D+G+ +DG G+ DADWA D++ +KST+GYVF+++ AISW S+KQ V S+ EA+
Sbjct: 126 RLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEI--FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV------DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAE 390
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H8W9_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8W9_PHYRM) HSP 1 Score: 166 bits (420), Expect = 4.140e-43 Identity = 102/275 (37.09%), Postives = 151/275 (54.91%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +++ + KH +S+RF M DLG L LG+E++ D +G T + K F + + P+ G L+ + E C +R V LMY TRPD+A A ++ DPC + KR+ R L P G+ F + + G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V SSTEA+
Sbjct: 436 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 704
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM) HSP 1 Score: 166 bits (420), Expect = 6.340e-43 Identity = 102/275 (37.09%), Postives = 151/275 (54.91%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +++ + KH +S+RF M DLG L LG+E++ D +G T + K F + + P+ G L+ + E C +R V LMY TRPD+A A ++ DPC + KR+ R L P G+ F + + G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V SSTEA+
Sbjct: 800 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 1068
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H9M9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9M9_PHYRM) HSP 1 Score: 164 bits (414), Expect = 1.890e-42 Identity = 101/274 (36.86%), Postives = 150/274 (54.74%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEA 807
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDL++A +++ + KH +S+RF M DLG L LG+E++ D +G T + K F + + P+ G L+ + E C +R V LMY TRPD+A A ++ DPC + KR+ R L P G+ F + + G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V SSTEA
Sbjct: 474 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD-GQDM-IFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLQFILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-LREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEA 741
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3GQK5_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQK5_PHYRM) HSP 1 Score: 164 bits (415), Expect = 2.640e-42 Identity = 103/272 (37.87%), Postives = 151/272 (55.51%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKVD-EFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEK--GEIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGN--SSEHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +K+ + K +S RF M D+G L LG+E+ +D G + + K +I S DK K+ + + E C + +R V LMY GTRPD+A A ++ DPC + KR++R + GI F + DGL+G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V SSTEA+
Sbjct: 563 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDI-IFVALYVDDLVLASSSDKMLLDTKQALSHRFEMMDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCH-DGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 831
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM) HSP 1 Score: 155 bits (391), Expect = 2.750e-42 Identity = 96/267 (35.96%), Postives = 145/267 (54.31%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELV 786
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +++ + KH + +RF M DLG L LG+E++ D +G T + K F + + P+ G L+ + E C +R V LMY TRPD+A A ++ DPC + KR+ R L P G+ F +++ G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V
Sbjct: 18 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALCKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEDGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSREASL-GMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTV 278
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H925_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H925_PHYRM) HSP 1 Score: 162 bits (411), Expect = 3.110e-42 Identity = 100/275 (36.36%), Postives = 150/275 (54.55%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +++ + KH +S+RF M DLG L LG+E++ D +G T + K F + + P+ G L+ + E C +R + LMY TRPD+A A ++ DPC + KR+ R L P G+ F + + G+ G+ DADWA D + ++ST+GY F +N G ISW S+KQ V SSTEA+
Sbjct: 348 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAIGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SQEDSVGMCGYSDADWAGDTKSRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 616
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM) HSP 1 Score: 163 bits (413), Expect = 4.930e-42 Identity = 103/272 (37.87%), Postives = 150/272 (55.15%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKVD-EFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEK--GEIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGN--SSEHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L++SLYGLKQ+ R N T DDF++++G ++ + C+Y D G+D I VA+YVDDLV+A +K+ + K +S RF M D+G L LG+E+ +D G + + K +I S DK K+ + + E C + +R V LMY GTRPD+A A ++ DPC + KR++R + GI N DGL+G+ DADWA D+E ++ST+GY F +N G ISW S+KQ V SSTEA+
Sbjct: 562 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD-GQDM-IFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIESQASCN-DGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 830
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.430e-41 Identity = 102/275 (37.09%), Postives = 143/275 (52.00%), Query Frame = 1
Query: 10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIA-GRREKVDEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSS--EHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
+L+++LYGLKQ+ R N T D+F+ +IG + T C+Y D + I V +YVDDL++A + + K +S RF M DLG L LG+EV RD +G + + K F + P+ G L+ E C +R V +MY GTRPD+A A ++ DPC + KR+ R L P GI F G +G+ L G+ DADWA D+E ++ST+GYVF LN G I+W S+KQ V SSTEA+
Sbjct: 138 KLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRD--DKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMC---EGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAE 406 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1969.5009.1 >prot_H-paniculata_contig1969.5009.1 ID=prot_H-paniculata_contig1969.5009.1|Name=mRNA_H-paniculata_contig1969.5009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp MKDLGSLSCVLGIEVRRDRSNGVPTTVEEKGEIFAPESTDKPPEPKSLGAback to top mRNA from alignment at H-paniculata_contig1969:2528..3409- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1969.5009.1 ID=mRNA_H-paniculata_contig1969.5009.1|Name=mRNA_H-paniculata_contig1969.5009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=882bp|location=Sequence derived from alignment at H-paniculata_contig1969:2528..3409- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1969:2528..3409- >mRNA_H-paniculata_contig1969.5009.1 ID=mRNA_H-paniculata_contig1969.5009.1|Name=mRNA_H-paniculata_contig1969.5009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig1969:2528..3409- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |