mRNA_H-paniculata_contig1969.5009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1969.5009.1
Unique NamemRNA_H-paniculata_contig1969.5009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 166 bits (421), Expect = 3.480e-45
Identity = 103/275 (37.45%), Postives = 152/275 (55.27%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKVDEF-KHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +++ E  KH +S+RF M DLG L   LG+E++  R +G  T  + K        F  + +     P+  G  L+     + E  C          +R +V  LMY    TRPD+A A    ++   DPC   +   KR+ R L   P  G+ F  + +  G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V  SSTEA+
Sbjct:   35 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 303          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 165 bits (418), Expect = 3.860e-43
Identity = 102/273 (37.36%), Postives = 151/273 (55.31%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRRE-KVDEFKHNISRRFRMKDLGSLSCVLGIEV--RRDRSN---GVPTTVEEKGEIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSEHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            RLR+S+YGLKQ+ R  N+  D  L  +G  ++T  PC+Y   + GE    ++AVYVDD+++AG+ + K++E K  ++ +F+MKD+G L   LG++V  + D      G     +   E F  ES+     P + G  L       Q        +   ++  V  L+Y ST TRPDIAYA    AR   DP  E +   KRI R L+   D+G+ +DG        G+ DADWA D++ +KST+GYVF+++  AISW S+KQ  V  S+ EA+
Sbjct:  126 RLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEI--FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV------DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAE 390          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H8W9_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8W9_PHYRM)

HSP 1 Score: 166 bits (420), Expect = 4.140e-43
Identity = 102/275 (37.09%), Postives = 151/275 (54.91%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +++ +  KH +S+RF M DLG L   LG+E++ D  +G  T  + K        F  + +     P+  G  L+     + E  C          +R  V  LMY    TRPD+A A    ++   DPC   +   KR+ R L   P  G+ F  + +  G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V  SSTEA+
Sbjct:  436 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 704          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 166 bits (420), Expect = 6.340e-43
Identity = 102/275 (37.09%), Postives = 151/275 (54.91%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +++ +  KH +S+RF M DLG L   LG+E++ D  +G  T  + K        F  + +     P+  G  L+     + E  C          +R  V  LMY    TRPD+A A    ++   DPC   +   KR+ R L   P  G+ F  + +  G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V  SSTEA+
Sbjct:  800 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 1068          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H9M9_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9M9_PHYRM)

HSP 1 Score: 164 bits (414), Expect = 1.890e-42
Identity = 101/274 (36.86%), Postives = 150/274 (54.74%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEA 807
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDL++A   +++ +  KH +S+RF M DLG L   LG+E++ D  +G  T  + K        F  + +     P+  G  L+     + E  C          +R  V  LMY    TRPD+A A    ++   DPC   +   KR+ R L   P  G+ F  + +  G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V  SSTEA
Sbjct:  474 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD-GQDM-IFVALYVDDLILASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLQFILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-LREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEA 741          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3GQK5_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQK5_PHYRM)

HSP 1 Score: 164 bits (415), Expect = 2.640e-42
Identity = 103/272 (37.87%), Postives = 151/272 (55.51%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKVD-EFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEK--GEIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGN--SSEHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +K+  + K  +S RF M D+G L   LG+E+ +D   G  +  + K   +I    S DK    K+       +   + E  C       +  +R  V  LMY   GTRPD+A A    ++   DPC   +   KR++R +      GI F    + DGL+G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V  SSTEA+
Sbjct:  563 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDI-IFVALYVDDLVLASSSDKMLLDTKQALSHRFEMMDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCH-DGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 831          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM)

HSP 1 Score: 155 bits (391), Expect = 2.750e-42
Identity = 96/267 (35.96%), Postives = 145/267 (54.31%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELV 786
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +++ +  KH + +RF M DLG L   LG+E++ D  +G  T  + K        F  + +     P+  G  L+     + E  C          +R  V  LMY    TRPD+A A    ++   DPC   +   KR+ R L   P  G+ F  +++  G+ G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V
Sbjct:   18 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALCKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEDGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSREASL-GMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTV 278          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H925_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H925_PHYRM)

HSP 1 Score: 162 bits (411), Expect = 3.110e-42
Identity = 100/275 (36.36%), Postives = 150/275 (54.55%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKV-DEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSSE--HRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +++ +  KH +S+RF M DLG L   LG+E++ D  +G  T  + K        F  + +     P+  G  L+     + E  C          +R  +  LMY    TRPD+A A    ++   DPC   +   KR+ R L   P  G+ F  + +  G+ G+ DADWA D + ++ST+GY F +N G ISW S+KQ  V  SSTEA+
Sbjct:  348 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTK---NMCEGGCQHEDTMKNVPYRSAIGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SQEDSVGMCGYSDADWAGDTKSRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 616          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM)

HSP 1 Score: 163 bits (413), Expect = 4.930e-42
Identity = 103/272 (37.87%), Postives = 150/272 (55.15%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIAGRREKVD-EFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEK--GEIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGN--SSEHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L++SLYGLKQ+ R  N T DDF++++G ++  +  C+Y   D G+D  I VA+YVDDLV+A   +K+  + K  +S RF M D+G L   LG+E+ +D   G  +  + K   +I    S DK    K+       +   + E  C       +  +R  V  LMY   GTRPD+A A    ++   DPC   +   KR++R +      GI      N DGL+G+ DADWA D+E ++ST+GY F +N G ISW S+KQ  V  SSTEA+
Sbjct:  562 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD-GQDM-IFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIESQASCN-DGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAE 830          
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.430e-41
Identity = 102/275 (37.09%), Postives = 143/275 (52.00%), Query Frame = 1
Query:   10 RLRKSLYGLKQTDRN*NNTRDDFLVEIGLQRSTTGPCLYFSCDKGEDTDILVAVYVDDLVIA-GRREKVDEFKHNISRRFRMKDLGSLSCVLGIEVRRDRSNGVPTTVEEKG-----EIFAPESTDKPPEPKSLGAVLSDIRATVQESSCGRSGNSS--EHRGMVVPLMYASTGTRPDIAYAAYQAARRMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAEDVEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD 810
            +L+++LYGLKQ+ R  N T D+F+ +IG  +  T  C+Y   D  +   I V +YVDDL++A    + +   K  +S RF M DLG L   LG+EV RD  +G  +  + K        F  +       P+  G  L+       E  C          +R  V  +MY   GTRPD+A A    ++   DPC   +   KR+ R L   P  GI F G  +G+ L G+ DADWA D+E ++ST+GYVF LN G I+W S+KQ  V  SSTEA+
Sbjct:  138 KLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRD--DKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMC---EGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAE 406          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1969.5009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GB98_PHYRM3.480e-4537.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT3.860e-4337.36Retrovirus-related Pol poly from transposon TNT 1-... [more]
H3H8W9_PHYRM4.140e-4337.09Integrase catalytic domain-containing protein n=3 ... [more]
H3H4L3_PHYRM6.340e-4337.09Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
H3H9M9_PHYRM1.890e-4236.86CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3GQK5_PHYRM2.640e-4237.87CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H910_PHYRM2.750e-4235.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H925_PHYRM3.110e-4236.36Integrase catalytic domain-containing protein n=2 ... [more]
H3H839_PHYRM4.930e-4237.87Integrase catalytic domain-containing protein n=4 ... [more]
A0A5D6YB57_9STRA2.430e-4137.09Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1969contigH-paniculata_contig1969:2528..3409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue8.3e-22
Seed eggNOG ortholog67593.Physo127720
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size810
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1969.5009.1prot_H-paniculata_contig1969.5009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1969 2528..3160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929490.4846427-CDS-H-paniculata_contig1969:2527..30241622929490.4846427-CDS-H-paniculata_contig1969:2527..3024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1969 2528..3024 -
1691480884.3249667-CDS-H-paniculata_contig1969:2527..30241691480884.3249667-CDS-H-paniculata_contig1969:2527..3024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1969 2528..3024 -
1622929490.5054388-CDS-H-paniculata_contig1969:3096..31601622929490.5054388-CDS-H-paniculata_contig1969:3096..3160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1969 3097..3160 -
1691480884.3386474-CDS-H-paniculata_contig1969:3096..31601691480884.3386474-CDS-H-paniculata_contig1969:3096..3160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1969 3097..3160 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929490.5239315-UTR-H-paniculata_contig1969:3160..34091622929490.5239315-UTR-H-paniculata_contig1969:3160..3409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1969 3161..3409 -
1691480884.351454-UTR-H-paniculata_contig1969:3160..34091691480884.351454-UTR-H-paniculata_contig1969:3160..3409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1969 3161..3409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1969.5009.1

>prot_H-paniculata_contig1969.5009.1 ID=prot_H-paniculata_contig1969.5009.1|Name=mRNA_H-paniculata_contig1969.5009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MKDLGSLSCVLGIEVRRDRSNGVPTTVEEKGEIFAPESTDKPPEPKSLGA
VLSDIRATVQESSCGRSGNSSEHRGMVVPLMYASTGTRPDIAYAAYQAAR
RMEDPCREDFSTCKRIYRDLSTVPDLGITFDGKSNGDGLEGFVDADWAED
VEGQKSTTGYVFELNRGAISWCSRKQELVTWSSTEAD
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mRNA from alignment at H-paniculata_contig1969:2528..3409-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1969.5009.1 ID=mRNA_H-paniculata_contig1969.5009.1|Name=mRNA_H-paniculata_contig1969.5009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=882bp|location=Sequence derived from alignment at H-paniculata_contig1969:2528..3409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTGCGCCGCCTGCGTAAAAGCTTGTATGGCCTCAAGCAGACCGACCG AAACTAGAATAACACTCGTGACGATTTTCTTGTTGAAATAGGACTCCAGC GTTCCACTACCGGCCCATGCTTGTACTTCTCTTGCGACAAAGGGGAAGAT ACAGACATTCTCGTGGCCGTCTATGTTGACGACTTGGTCATCGCTGGACG TCGTGAGAAAGTAGACGAGTTCAAGCACAACATAAGTCGGCGTTTCAGGA TGAAAGACTTGGGCTCCCTCTCGTGCGTATTGGGAATAGAAGTACGACGT GATCGCTCTAATGGTACCACATCAATATCCTAAGGTGGCTACATCCGTGA GGTACTGAAAAGATACGGCTTTGATGAGTGTCGAGGCGTGCCCACCACTG TAGAGGAAAAAGGGGAGATTTTCGCACCTGAGTCGACCGACAAGCCTCCC GAACCGAAGTCCCTTGGGGCTGTACTGTCGGACATACGCGCAACAGTACA AGAAAGCAGCTGTGGGAGAAGTGGCAATTCATCTGAACACAGAGGCATGG TAGTACCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATAC GCAGCATACCAAGCAGCGCGTCGTATGGAGGACCCATGTCGGGAAGACTT CAGTACATGCAAGCGCATTTATCGTGACCTCAGTACTGTGCCTGACCTTG GCATTACGTTCGACGGTAAGAGTAATGGCGACGGTCTGGAAGGATTCGTT GATGCCGATTGGGCGGAAGATGTCGAGGGCCAGAAGTCCACAACAGGATA CGTATTCGAGCTGAACCGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAAG AGTTAGTCACGTGGTCCAGTACAGAAGCAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1969:2528..3409-

>mRNA_H-paniculata_contig1969.5009.1 ID=mRNA_H-paniculata_contig1969.5009.1|Name=mRNA_H-paniculata_contig1969.5009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig1969:2528..3409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCCCTCTCGTGCGTATTGGGAATAGAAGTACGACG
TGATCGCTCTAATGATGAAAGACTTGGGCTCCCTCTCGTGCGTATTGGGA
ATAGAAGTACGACGTGATCGCTCTAATGGCGTGCCCACCACTGTAGAGGA
AAAAGGGGAGATTTTCGCACCTGAGTCGACCGACAAGCCTCCCGAACCGA
AGTCCCTTGGGGCTGTACTGTCGGACATACGCGCAACAGTACAAGAAAGC
AGCTGTGGGAGAAGTGGCAATTCATCTGAACACAGAGGCATGGTAGTACC
ACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCAGCAT
ACCAAGCAGCGCGTCGTATGGAGGACCCATGTCGGGAAGACTTCAGTACA
TGCAAGCGCATTTATCGTGACCTCAGTACTGTGCCTGACCTTGGCATTAC
GTTCGACGGTAAGAGTAATGGCGACGGTCTGGAAGGATTCGTTGATGCCG
ATTGGGCGGAAGATGTCGAGGGCCAGAAGTCCACAACAGGATACGTATTC
GAGCTGAACCGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAAGAGTTAGT
CACGTGGTCCAGTACAGAAGCAGATGCGTGCCCACCACTGTAGAGGAAAA
AGGGGAGATTTTCGCACCTGAGTCGACCGACAAGCCTCCCGAACCGAAGT
CCCTTGGGGCTGTACTGTCGGACATACGCGCAACAGTACAAGAAAGCAGC
TGTGGGAGAAGTGGCAATTCATCTGAACACAGAGGCATGGTAGTACCACT
CATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCAGCATACC
AAGCAGCGCGTCGTATGGAGGACCCATGTCGGGAAGACTTCAGTACATGC
AAGCGCATTTATCGTGACCTCAGTACTGTGCCTGACCTTGGCATTACGTT
CGACGGTAAGAGTAATGGCGACGGTCTGGAAGGATTCGTTGATGCCGATT
GGGCGGAAGATGTCGAGGGCCAGAAGTCCACAACAGGATACGTATTCGAG
CTGAACCGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAAGAGTTAGTCAC
GTGGTCCAGTACAGAAGCAGAT
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