prot_H-paniculata_contig9210.17014.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9210.17014.1
Unique Nameprot_H-paniculata_contig9210.17014.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.860e-21
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0
Query:    1 MAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVL 57
            +AKLGVCHPGQSYNP EEDH DVLASAVAVEL+R+EA+ +E  PIS GMS ETLAV+
Sbjct:  182 LAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVI 238          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S4UQA2_9STRA (Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQA2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0
Query:    4 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLV 58
            + + H GQSYNP E  HQDV+  A+++EL+REEALA  K PIS G+S ETLA++V
Sbjct:  218 IELAHGGQSYNPDENQHQDVIGEALSIELKREEALAYRKTPISNGLSKETLAIMV 272          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.450e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 0
Query:    9 PGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGDE 61
            PGQSYNP + DH++ +A AVA+EL+RE+A+     PI+QG+S ETLA+LVGD+
Sbjct:  120 PGQSYNPEQGDHEEAVAEAVALELKREDAVKAANAPIAQGLSAETLALLVGDD 172          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: B8BPY1_THAPS (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY1_THAPS)

HSP 1 Score: 62.0 bits (149), Expect = 9.950e-10
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    4 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGD 60
            L V HPGQSY P +E HQD +  A+++E+RR EA   + KPIS GMS  T   +VG+
Sbjct:  226 LEVAHPGQSYRPDKEQHQDAIGEALSIEIRRNEAEEYKSKPISSGMSEFTKRFIVGE 282          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: K0TBJ2_THAOC (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBJ2_THAOC)

HSP 1 Score: 60.8 bits (146), Expect = 2.540e-9
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    6 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLV 58
            V HPGQSY+P +E HQD +  A+++E+RR EAL  ++KPIS GMS  T   ++
Sbjct:  210 VAHPGQSYHPDKEHHQDAIGEALSIEIRRNEALDYKRKPISDGMSQFTKEFII 262          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S2JT46_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT46_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.850e-9
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    8 HPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVL 57
            H GQSY P +E HQDV+  A+AVELRR++A+   + P+  GMS ETLA+L
Sbjct:  199 HGGQSYQPDKEQHQDVIGEALAVELRRKDAVEYRRTPLWNGMSKETLALL 248          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S0CMX1_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMX1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.860e-8
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    4 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGDE 61
            + V H GQSY+P  E HQDV+  A+A+EL+REEA+   K PI++ MS ETL +L+ ++
Sbjct:    3 IEVAHGGQSYHPDGELHQDVIGEALAMELKREEAMEYLKTPIAE-MSEETLRILINED 59          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S2D1F3_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1F3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.470e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    6 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMS 50
            V HPG SYNP   DHQD++A AVA+E+RR+E  A++ KP+S   S
Sbjct:  143 VSHPGTSYNPEINDHQDLIAEAVALEVRRDETEAEQAKPLSAATS 187          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S1BLJ4_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLJ4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.180e-7
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    6 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQG-MSNETLAVL 57
            V HPGQSYNP  E HQ+ L  A+A+E+RR EA  + + P   G MS ET AVL
Sbjct:  177 VAHPGQSYNPDTEFHQEALGEALAIEIRRTEAEVELRTPAGGGQMSAETKAVL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JN42_9PHAE3.860e-2177.19Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarp... [more]
A0A7S4UQA2_9STRA1.030e-1258.18Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum ... [more]
A0A835YY73_9STRA1.450e-1158.49Ribosome biogenesis protein NOP53 n=1 Tax=Tribonem... [more]
B8BPY1_THAPS9.950e-1050.88Ribosome biogenesis protein NOP53 n=1 Tax=Thalassi... [more]
K0TBJ2_THAOC2.540e-950.94Ribosome biogenesis protein NOP53 n=1 Tax=Thalassi... [more]
A0A7S2JT46_9STRA8.850e-956.00Ribosome biogenesis protein NOP53 n=1 Tax=Leptocyl... [more]
A0A7S0CMX1_9STRA3.860e-850.00Ribosome biogenesis protein NOP53 n=1 Tax=Probosci... [more]
A0A7S2D1F3_9STRA1.470e-755.56Ribosome biogenesis protein NOP53 n=1 Tax=Dictyoch... [more]
A0A7S1BLJ4_9STRA5.180e-754.72Ribosome biogenesis protein NOP53 n=1 Tax=Corethro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PFAMPF07767Nop53coord: 5..43
e-value: 3.7E-10
score: 39.7
IPR011687Ribosome biogenesis protein Nop53/GLTSCR2PANTHERPTHR14211GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2coord: 6..52
NoneNo IPR availablePANTHERPTHR14211:SF7RIBOSOME BIOGENESIS PROTEIN NOP53coord: 6..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9210contigH-paniculata_contig9210:261..443 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9210.17014.1mRNA_H-paniculata_contig9210.17014.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9210 261..455 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9210.17014.1 ID=prot_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMS
NETLAVLVGDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011687Nop53/GLTSCR2