mRNA_H-paniculata_contig9210.17014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 4.770e-22 Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1
Query: 1 TVRDMAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVL 183
+ R++AKLGVCHPGQSYNP EEDH DVLASAVAVEL+R+EA+ +E PIS GMS ETLAV+
Sbjct: 178 SARNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVI 238
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S4UQA2_9STRA (Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQA2_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.660e-12 Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 22 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLV 186
+ + H GQSYNP E HQDV+ A+++EL+REEALA K PIS G+S ETLA++V
Sbjct: 218 IELAHGGQSYNPDENQHQDVIGEALSIELKREEALAYRKTPISNGLSKETLAIMV 272
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.710e-11 Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 37 PGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGDE 195
PGQSYNP + DH++ +A AVA+EL+RE+A+ PI+QG+S ETLA+LVGD+
Sbjct: 120 PGQSYNPEQGDHEEAVAEAVALELKREDAVKAANAPIAQGLSAETLALLVGDD 172
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: B8BPY1_THAPS (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY1_THAPS) HSP 1 Score: 63.5 bits (153), Expect = 3.360e-10 Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 1 TVRDMAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGD 192
T + L V HPGQSY P +E HQD + A+++E+RR EA + KPIS GMS T +VG+
Sbjct: 219 TAKPTLALEVAHPGQSYRPDKEQHQDAIGEALSIEIRRNEAEEYKSKPISSGMSEFTKRFIVGE 282
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: K0TBJ2_THAOC (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBJ2_THAOC) HSP 1 Score: 60.5 bits (145), Expect = 4.090e-9 Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 28 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLV 186
V HPGQSY+P +E HQD + A+++E+RR EAL ++KPIS GMS T ++
Sbjct: 210 VAHPGQSYHPDKEHHQDAIGEALSIEIRRNEALDYKRKPISDGMSQFTKEFII 262
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S2JT46_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT46_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.040e-8 Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 34 HPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVL 183
H GQSY P +E HQDV+ A+AVELRR++A+ + P+ GMS ETLA+L
Sbjct: 199 HGGQSYQPDKEQHQDVIGEALAVELRRKDAVEYRRTPLWNGMSKETLALL 248
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S0CMX1_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMX1_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 6.290e-8 Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 22 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGDE 195
+ V H GQSY+P E HQDV+ A+A+EL+REEA+ K PI++ MS ETL +L+ ++
Sbjct: 3 IEVAHGGQSYHPDGELHQDVIGEALAMELKREEAMEYLKTPIAE-MSEETLRILINED 59
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S2D1F3_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1F3_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 2.360e-7 Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 28 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMS 162
V HPG SYNP DHQD++A AVA+E+RR+E A++ KP+S S
Sbjct: 143 VSHPGTSYNPEINDHQDLIAEAVALEVRRDETEAEQAKPLSAATS 187
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S1BLJ4_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLJ4_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 4.460e-7 Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 7 RDMAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQG-MSNETLAVL 183
R + V HPGQSYNP E HQ+ L A+A+E+RR EA + + P G MS ET AVL
Sbjct: 170 RPTIAVEVAHPGQSYNPDTEFHQEALGEALAIEIRRTEAEVELRTPAGGGQMSAETKAVL 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9210.17014.1 >prot_H-paniculata_contig9210.17014.1 ID=prot_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp MAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSback to top mRNA from alignment at H-paniculata_contig9210:261..455- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9210.17014.1 ID=mRNA_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig9210:261..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9210:261..455- >mRNA_H-paniculata_contig9210.17014.1 ID=mRNA_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig9210:261..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |