mRNA_H-paniculata_contig9210.17014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9210.17014.1
Unique NamemRNA_H-paniculata_contig9210.17014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.770e-22
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 TVRDMAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVL 183
            + R++AKLGVCHPGQSYNP EEDH DVLASAVAVEL+R+EA+ +E  PIS GMS ETLAV+
Sbjct:  178 SARNLAKLGVCHPGQSYNPAEEDHDDVLASAVAVELKRQEAIEEESAPISAGMSEETLAVI 238          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S4UQA2_9STRA (Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQA2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.660e-12
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   22 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLV 186
            + + H GQSYNP E  HQDV+  A+++EL+REEALA  K PIS G+S ETLA++V
Sbjct:  218 IELAHGGQSYNPDENQHQDVIGEALSIELKREEALAYRKTPISNGLSKETLAIMV 272          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.710e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   37 PGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGDE 195
            PGQSYNP + DH++ +A AVA+EL+RE+A+     PI+QG+S ETLA+LVGD+
Sbjct:  120 PGQSYNPEQGDHEEAVAEAVALELKREDAVKAANAPIAQGLSAETLALLVGDD 172          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: B8BPY1_THAPS (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY1_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 3.360e-10
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 TVRDMAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGD 192
            T +    L V HPGQSY P +E HQD +  A+++E+RR EA   + KPIS GMS  T   +VG+
Sbjct:  219 TAKPTLALEVAHPGQSYRPDKEQHQDAIGEALSIEIRRNEAEEYKSKPISSGMSEFTKRFIVGE 282          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: K0TBJ2_THAOC (Ribosome biogenesis protein NOP53 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBJ2_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 4.090e-9
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query:   28 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLV 186
            V HPGQSY+P +E HQD +  A+++E+RR EAL  ++KPIS GMS  T   ++
Sbjct:  210 VAHPGQSYHPDKEHHQDAIGEALSIEIRRNEALDYKRKPISDGMSQFTKEFII 262          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S2JT46_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT46_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.040e-8
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   34 HPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVL 183
            H GQSY P +E HQDV+  A+AVELRR++A+   + P+  GMS ETLA+L
Sbjct:  199 HGGQSYQPDKEQHQDVIGEALAVELRRKDAVEYRRTPLWNGMSKETLALL 248          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S0CMX1_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CMX1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.290e-8
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   22 LGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMSNETLAVLVGDE 195
            + V H GQSY+P  E HQDV+  A+A+EL+REEA+   K PI++ MS ETL +L+ ++
Sbjct:    3 IEVAHGGQSYHPDGELHQDVIGEALAMELKREEAMEYLKTPIAE-MSEETLRILINED 59          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S2D1F3_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1F3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.360e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   28 VCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMS 162
            V HPG SYNP   DHQD++A AVA+E+RR+E  A++ KP+S   S
Sbjct:  143 VSHPGTSYNPEINDHQDLIAEAVALEVRRDETEAEQAKPLSAATS 187          
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Match: A0A7S1BLJ4_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLJ4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.460e-7
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    7 RDMAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQG-MSNETLAVL 183
            R    + V HPGQSYNP  E HQ+ L  A+A+E+RR EA  + + P   G MS ET AVL
Sbjct:  170 RPTIAVEVAHPGQSYNPDTEFHQEALGEALAIEIRRTEAEVELRTPAGGGQMSAETKAVL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9210.17014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JN42_9PHAE4.770e-2273.77Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarp... [more]
A0A7S4UQA2_9STRA1.660e-1258.18Ribosome biogenesis protein NOP53 n=2 Tax=Ditylum ... [more]
A0A835YY73_9STRA1.710e-1158.49Ribosome biogenesis protein NOP53 n=1 Tax=Tribonem... [more]
B8BPY1_THAPS3.360e-1046.88Ribosome biogenesis protein NOP53 n=1 Tax=Thalassi... [more]
K0TBJ2_THAOC4.090e-950.94Ribosome biogenesis protein NOP53 n=1 Tax=Thalassi... [more]
A0A7S2JT46_9STRA1.040e-856.00Ribosome biogenesis protein NOP53 n=1 Tax=Leptocyl... [more]
A0A7S0CMX1_9STRA6.290e-850.00Ribosome biogenesis protein NOP53 n=1 Tax=Probosci... [more]
A0A7S2D1F3_9STRA2.360e-755.56Ribosome biogenesis protein NOP53 n=1 Tax=Dictyoch... [more]
A0A7S1BLJ4_9STRA4.460e-750.00Ribosome biogenesis protein NOP53 n=1 Tax=Corethro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9210contigH-paniculata_contig9210:261..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog2880.D7G5F1
KEGG koko:K14840
KEGG Pathwayko05168,map05168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nop53 (60S ribosomal biogenesis)
EggNOG OGs2CZAS@1,2S9EB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size195
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.9256501-CDS-H-paniculata_contig9210:260..4431622931146.9256501-CDS-H-paniculata_contig9210:260..443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9210 261..443 -
1691481611.9229214-CDS-H-paniculata_contig9210:260..4431691481611.9229214-CDS-H-paniculata_contig9210:260..443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9210 261..443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.945515-UTR-H-paniculata_contig9210:443..4551622931146.945515-UTR-H-paniculata_contig9210:443..455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9210 444..455 -
1691481611.93822-UTR-H-paniculata_contig9210:443..4551691481611.93822-UTR-H-paniculata_contig9210:443..455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9210 444..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9210.17014.1prot_H-paniculata_contig9210.17014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9210 261..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9210.17014.1

>prot_H-paniculata_contig9210.17014.1 ID=prot_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MAKLGVCHPGQSYNPTEEDHQDVLASAVAVELRREEALADEKKPISQGMS
NETLAVLVGDE
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mRNA from alignment at H-paniculata_contig9210:261..455-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9210.17014.1 ID=mRNA_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig9210:261..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGTTCGCGACATGGCAAAGCTTGGAGTATGCCACCCGGGACAATCGTA CAACCCCACAGAAGAGGACCACCAGGATGTCCTCGCGAGCGCGGTGGCCG TAGAGTTGAGAAGAGAGGAGGCGCTGGCTGACGAGAAAAAGCCTATCTCT CAGGGAATGTCCAACGAGACTTTAGCTGTCTTGGTGGGAGATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9210:261..455-

>mRNA_H-paniculata_contig9210.17014.1 ID=mRNA_H-paniculata_contig9210.17014.1|Name=mRNA_H-paniculata_contig9210.17014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig9210:261..455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAAGCTTGGAGTATGCCACCCGGGACAATCGTACAACCCCACAGA
AGAGGACCACCAGGATGTCCTCGCGAGCGCGGTGGCCGTAGAGTTGAGAA
GAGAGGAGGCGCTGGCTGACGAGAAAAAGCCTATCTCTCAGGGAATGTCC
AACGAGACTTTAGCTGTCTTGGTGGGAGATGAGATGGCAAAGCTTGGAGT
ATGCCACCCGGGACAATCGTACAACCCCACAGAAGAGGACCACCAGGATG
TCCTCGCGAGCGCGGTGGCCGTAGAGTTGAGAAGAGAGGAGGCGCTGGCT
GACGAGAAAAAGCCTATCTCTCAGGGAATGTCCAACGAGACTTTAGCTGT
CTTGGTGGGAGATGAG
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