prot_H-paniculata_contig8985.16835.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8985.16835.1
Unique Nameprot_H-paniculata_contig8985.16835.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length68
Homology
BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Match: A0A6H5KSH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-12
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    9 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFNLPASQQADLGPRREDEEL 68
            GE +W+ GCA  RD+  G ++I+Q  ++D++ KCFDV++   +PAS   DLGP+R+DE+L
Sbjct: 1088 GEYEWFGGCAIERDVEAGTLKISQTAYIDSMVKCFDVQSPSRIPASPNVDLGPKRDDEKL 1147          
BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Match: A0A6H5JJ03_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ03_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 5.950e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    3 EFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFNLPASQQADLGPRREDE 66
            +F TT  GE +W+ G A  RD+  G  RI+Q  ++D++ KCFDV++   +PAS   DLGP+R+DE
Sbjct:  565 KFPTTNLGECEWFDGYAIERDVEAGTYRISQTAYIDSMVKCFDVQSTSRIPASPGVDLGPKRDDE 629          
BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Match: A0A6H5JAZ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.860e-10
Identity = 24/58 (41.38%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    9 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFNLPASQQADLGPRREDE 66
            G ++ + GCA  RD+  G +++++  ++D++ KCFDV++ F +PAS   DLGP+R+DE
Sbjct:  940 GRMRMFDGCAIERDVEAGTLKLSKTAYIDSMVKCFDVQSTFRIPASPGVDLGPKRDDE 997          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSH9_9PHAE1.030e-1246.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJ03_9PHAE5.950e-1146.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAZ6_9PHAE2.860e-1041.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8985contigH-paniculata_contig8985:2206..2409 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8985.16835.1mRNA_H-paniculata_contig8985.16835.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8985 2196..2409 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8985.16835.1 ID=prot_H-paniculata_contig8985.16835.1|Name=mRNA_H-paniculata_contig8985.16835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MAEFQTTRGELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFN
LPASQQADLGPRREDEEL
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