mRNA_H-paniculata_contig8985.16835.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8985.16835.1
Unique NamemRNA_H-paniculata_contig8985.16835.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Match: A0A6H5KSH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-12
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:   35 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFNLPASQQADLGPRREDEEL 214
            GE +W+ GCA  RD+  G ++I+Q  ++D++ KCFDV++   +PAS   DLGP+R+DE+L
Sbjct: 1088 GEYEWFGGCAIERDVEAGTLKISQTAYIDSMVKCFDVQSPSRIPASPNVDLGPKRDDEKL 1147
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BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Match: A0A6H5JJ03_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ03_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.420e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:    2 AALMAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFNLPASQQADLGPRREDE 208
            A L  +F TT  GE +W+ G A  RD+  G  RI+Q  ++D++ KCFDV++   +PAS   DLGP+R+DE
Sbjct:  560 ACLNKKFPTTNLGECEWFDGYAIERDVEAGTYRISQTAYIDSMVKCFDVQSTSRIPASPGVDLGPKRDDE 629
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BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Match: A0A6H5JAZ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.240e-10
Identity = 24/58 (41.38%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:   35 GELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFNLPASQQADLGPRREDE 208
            G ++ + GCA  RD+  G +++++  ++D++ KCFDV++ F +PAS   DLGP+R+DE
Sbjct:  940 GRMRMFDGCAIERDVEAGTLKLSKTAYIDSMVKCFDVQSTFRIPASPGVDLGPKRDDE 997
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8985.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSH9_9PHAE1.170e-1246.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJ03_9PHAE1.420e-1145.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAZ6_9PHAE3.240e-1041.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8985contigH-paniculata_contig8985:2196..2409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.6183925-UTR-H-paniculata_contig8985:2195..22051622931121.6183925-UTR-H-paniculata_contig8985:2195..2205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8985 2196..2205 +
1691481599.9943633-UTR-H-paniculata_contig8985:2195..22051691481599.9943633-UTR-H-paniculata_contig8985:2195..2205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8985 2196..2205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.638035-CDS-H-paniculata_contig8985:2205..24091622931121.638035-CDS-H-paniculata_contig8985:2205..2409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8985 2206..2409 +
1691481600.0037444-CDS-H-paniculata_contig8985:2205..24091691481600.0037444-CDS-H-paniculata_contig8985:2205..2409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8985 2206..2409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8985.16835.1prot_H-paniculata_contig8985.16835.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8985 2206..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8985.16835.1

>prot_H-paniculata_contig8985.16835.1 ID=prot_H-paniculata_contig8985.16835.1|Name=mRNA_H-paniculata_contig8985.16835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MAEFQTTRGELKWYLGCAFWRDIVRGVVRITQRTFVDTVTKCFDVETEFN
LPASQQADLGPRREDEEL
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mRNA from alignment at H-paniculata_contig8985:2196..2409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8985.16835.1 ID=mRNA_H-paniculata_contig8985.16835.1|Name=mRNA_H-paniculata_contig8985.16835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=214bp|location=Sequence derived from alignment at H-paniculata_contig8985:2196..2409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGCGTTGATGGCGGAGTTTCAAACCACGAGAGGCGAGCTCAAGTGGT
ACCTGGGTTGCGCATTTTGGCGTGACATAGTGAGGGGAGTTGTTCGCATC
ACGCAACGGACATTCGTTGATACTGTCACTAAATGTTTTGACGTGGAAAC
CGAGTTTAACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGAGGG
AGGATGAGGAGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8985:2196..2409+

>mRNA_H-paniculata_contig8985.16835.1 ID=mRNA_H-paniculata_contig8985.16835.1|Name=mRNA_H-paniculata_contig8985.16835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig8985:2196..2409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGTTTCAAACCACGAGAGGCGAGCTCAAGTGGTACCTGGGTTG
CGCATTTTGGCGTGACATAGTGAGGGGAGTTGTTCGCATCACGCAACGGA
CATTCGTTGATACTGTCACTAAATGTTTTGACGTGGAAACCGAGTTTAAC
CTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGAGGGAGGATGAGGA
GTTGATGGCGGAGTTTCAAACCACGAGAGGCGAGCTCAAGTGGTACCTGG
GTTGCGCATTTTGGCGTGACATAGTGAGGGGAGTTGTTCGCATCACGCAA
CGGACATTCGTTGATACTGTCACTAAATGTTTTGACGTGGAAACCGAGTT
TAACCTTCCTGCGTCTCAGCAGGCAGATCTTGGGCCTAGGAGGGAGGATG
AGGAGTTG
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