|
|
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 446..473
e-value: 1.8E-6
score: 25.8
coord: 298..327
e-value: 1.7E-5
score: 22.7
coord: 411..438
e-value: 2.3E-4
score: 19.1
coord: 197..224
e-value: 8.6E-4
score: 17.3
coord: 261..290
e-value: 1.6E-5
score: 22.8
coord: 335..361
e-value: 4.9E-5
score: 21.2 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 372..399
e-value: 0.0011
score: 19.1
coord: 409..437
e-value: 1.5E-4
score: 21.8
coord: 261..290
e-value: 3.8E-6
score: 26.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 188..237
e-value: 1.1E-5
score: 25.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 443..491
e-value: 2.8E-11
score: 43.4
coord: 295..344
e-value: 8.4E-9
score: 35.5 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 189..223
score: 10.633 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 407..441
score: 9.131 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 259..293
score: 10.786 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 444..478
score: 10.808 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 333..367
score: 9.591 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 296..330
score: 9.679 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 370..404
score: 8.912 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 237..326
e-value: 4.0E-23
score: 83.7
coord: 327..403
e-value: 1.9E-17
score: 65.2 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 114..236
e-value: 6.1E-11
score: 44.2 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 404..491
e-value: 3.4E-24
score: 87.9 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 410..491
coord: 93..409 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig889.16773.1 ID=prot_H-paniculata_contig889.16773.1|Name=mRNA_H-paniculata_contig889.16773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=491bp
MTCRYAVRVEKTLGRHWRVRSGSAFHVLLHRPCQAEVLQSPGCSEGDTSV
TVPDNTDSPITGSTGHESQTSSLPATSASRNDWKEAQQVQVGSSSPPMLR
GLWTELSQQTIGSRRRGESRTNSTCNMGAAWHHHRNQRKHQIYSSESHRS
VRDVYWRRLNAARRQGNWKEVERVLMEAFDHTEASQVVDVRMCNLTMRTV
AAEGRWQNALTIFDRMRREGLQPDQRSYSAVIAACGKDWTRAVNLLREMQ
AKDSVVPPDAVVYNGVVTACARCGQWERAVGLLKEMQMKGGAVAPTVVSY
NAAITACGEGGQWEQGLQLLEEMQVEGGGITPDVISYSAAIKACGDAGQW
EKAVGLLREMQTGENPVSPSVVSYSAAIIACAKDGKWEQAVGLLRVMQTG
GRAIAPKQVHYNATITACARAREWRRAVDLLREMQQKRSSVTPNVVTYNT
AITACGESGQWKQALALFKEMQGKRRAIAPDVVSYTAAMKA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
|