mRNA_H-paniculata_contig889.16773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig889.16773.1
Unique NamemRNA_H-paniculata_contig889.16773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig889.16773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig889contigH-paniculata_contig889:13028..15271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1616
Cds size1473
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig889.16773.1prot_H-paniculata_contig889.16773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig889 13028..14500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.6364012-CDS-H-paniculata_contig889:13027..145001622931111.6364012-CDS-H-paniculata_contig889:13027..14500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig889 13028..14500 -
1691481595.3160658-CDS-H-paniculata_contig889:13027..145001691481595.3160658-CDS-H-paniculata_contig889:13027..14500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig889 13028..14500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.676534-UTR-H-paniculata_contig889:14500..145221622931111.676534-UTR-H-paniculata_contig889:14500..14522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig889 14501..14522 -
1691481595.328109-UTR-H-paniculata_contig889:14500..145221691481595.328109-UTR-H-paniculata_contig889:14500..14522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig889 14501..14522 -
1622931111.708863-UTR-H-paniculata_contig889:15150..152711622931111.708863-UTR-H-paniculata_contig889:15150..15271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig889 15151..15271 -
1691481595.3456025-UTR-H-paniculata_contig889:15150..152711691481595.3456025-UTR-H-paniculata_contig889:15150..15271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig889 15151..15271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig889.16773.1

>prot_H-paniculata_contig889.16773.1 ID=prot_H-paniculata_contig889.16773.1|Name=mRNA_H-paniculata_contig889.16773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=491bp
MTCRYAVRVEKTLGRHWRVRSGSAFHVLLHRPCQAEVLQSPGCSEGDTSV
TVPDNTDSPITGSTGHESQTSSLPATSASRNDWKEAQQVQVGSSSPPMLR
GLWTELSQQTIGSRRRGESRTNSTCNMGAAWHHHRNQRKHQIYSSESHRS
VRDVYWRRLNAARRQGNWKEVERVLMEAFDHTEASQVVDVRMCNLTMRTV
AAEGRWQNALTIFDRMRREGLQPDQRSYSAVIAACGKDWTRAVNLLREMQ
AKDSVVPPDAVVYNGVVTACARCGQWERAVGLLKEMQMKGGAVAPTVVSY
NAAITACGEGGQWEQGLQLLEEMQVEGGGITPDVISYSAAIKACGDAGQW
EKAVGLLREMQTGENPVSPSVVSYSAAIIACAKDGKWEQAVGLLRVMQTG
GRAIAPKQVHYNATITACARAREWRRAVDLLREMQQKRSSVTPNVVTYNT
AITACGESGQWKQALALFKEMQGKRRAIAPDVVSYTAAMKA
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mRNA from alignment at H-paniculata_contig889:13028..15271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig889.16773.1 ID=mRNA_H-paniculata_contig889.16773.1|Name=mRNA_H-paniculata_contig889.16773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2244bp|location=Sequence derived from alignment at H-paniculata_contig889:13028..15271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTACTTACTTCTAGGGATGGCAATGCTGATGTGGCGAATGTAACCAT
AGGCAAATTTTTACCACTCATCTCCACAATAATCGTAAGGAATCTCGGTA
ACCGGAAGCTCAGGAGTGGAGGTGAGATATGACAATATCTTTTGGTGTCG
AGTTGTCCTGACATTACCTTGGTGTAACCCTTTTTGTGCAATCGTGAGCG
GTGCTTGTTAGCAAATTCTATCGCTGAGAATGTAAAGGAGAAGCCAATGT
TTTCATGTATCTAGCCTTAGGTTGCTGGTAGCTGTGGGTATCAGGGTGTT
GTATCTATGAAATGCTGCGCGCCCAACATTCTTTCTGTCGATTTCCTTAT
CTGCTTCAGGGATGGCAGGCAAATAGAAACCTCAATACAGACACACCGTT
TACACCAAAAGTACAGAGGAAGATCTGTGTGTGTCAACGCATTCGAAGCT
TTTGAAGAACAAATGTTGTGCGCAAGTAAATCCCATGGCCCCTGGTTGCA
TTATCATGATCTCAGTTTGCTACCCTCAAGTGCTGCGGAGCGGTTCTCCT
TGACCGGGTGCTGTGTATGGATCATGTGCAGCAACGTTACCAAAAATGGA
TTCCGTCGGTTCTCCCATGAAGATTCAAGGGTTTATGACTTCCACTATTT
GCAGCAAACCGGGGCTCATCACAAGGCTAATACGCTTTAGGTTGCACAAT
TCATTCATAGTTCCCACAACCACCCCAAAACGAACCGCTTTTCATGCAGA
ACACACCCGCTGGAACTCGATATGACTTGCCGCTACGCTGTTCGTGTTGA
GAAGACGTTGGGAAGGCACTGGCGTGTGCGGAGCGGGTCTGCTTTCCATG
TTTTACTCCACCGCCCGTGTCAAGCCGAAGTTTTACAGTCACCTGGTTGT
TCTGAAGGAGATACGTCTGTGACAGTTCCAGACAACACAGATAGCCCCAT
CACTGGCTCGACGGGACACGAATCTCAGACATCATCACTTCCTGCTACTT
CGGCCAGTAGAAATGACTGGAAAGAGGCACAGCAGGTGCAAGTAGGTTCG
TCATCACCGCCGATGCTCAGGGGGTTATGGACGGAGCTTTCGCAGCAAAC
GATAGGCAGCCGCCGGCGAGGCGAGTCAAGGACGAATTCCACGTGCAACA
TGGGAGCGGCTTGGCATCATCACAGGAACCAAAGGAAACACCAAATATAC
TCTTCTGAAAGCCATCGAAGCGTCCGAGATGTCTACTGGCGAAGATTGAA
CGCAGCAAGAAGGCAAGGAAACTGGAAAGAGGTGGAGAGAGTGCTGATGG
AAGCCTTTGATCACACAGAGGCGAGTCAGGTTGTCGACGTGAGGATGTGC
AACCTTACGATGCGCACTGTTGCCGCCGAGGGAAGGTGGCAGAATGCGCT
GACCATATTTGACCGCATGAGACGAGAGGGATTGCAGCCGGATCAGCGCA
GCTATAGCGCAGTCATTGCAGCTTGTGGTAAAGATTGGACAAGAGCTGTG
AACCTGCTAAGGGAAATGCAGGCCAAGGACAGTGTAGTCCCTCCAGATGC
TGTTGTCTATAATGGGGTTGTCACCGCATGCGCAAGGTGCGGCCAGTGGG
AGCGGGCTGTAGGTCTGTTAAAAGAAATGCAGATGAAGGGTGGAGCGGTT
GCGCCTACGGTCGTCAGCTACAATGCAGCCATCACAGCCTGCGGGGAGGG
GGGACAGTGGGAGCAGGGTTTGCAGCTTTTGGAAGAGATGCAAGTGGAGG
GTGGCGGCATCACTCCTGATGTCATCAGCTATAGCGCAGCGATTAAGGCG
TGCGGAGATGCTGGCCAATGGGAGAAGGCTGTGGGACTCCTACGGGAGAT
GCAGACGGGAGAAAACCCGGTATCTCCTTCAGTGGTCAGCTACAGTGCAG
CAATCATTGCATGCGCTAAGGATGGCAAATGGGAACAGGCCGTAGGGCTA
TTAAGGGTAATGCAGACTGGTGGGAGAGCTATCGCGCCGAAGCAAGTTCA
CTACAACGCGACTATCACCGCATGTGCACGAGCTAGGGAGTGGAGAAGAG
CTGTCGATTTATTGAGAGAAATGCAGCAGAAGCGTTCCTCGGTGACCCCA
AATGTTGTCACCTACAACACTGCCATCACGGCATGCGGTGAGAGTGGTCA
GTGGAAGCAAGCTCTGGCTCTTTTCAAGGAGATGCAGGGGAAGCGCCGAG
CTATCGCACCTGATGTTGTGAGCTACACGGCGGCAATGAAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig889:13028..15271-

>mRNA_H-paniculata_contig889.16773.1 ID=mRNA_H-paniculata_contig889.16773.1|Name=mRNA_H-paniculata_contig889.16773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2946bp|location=Sequence derived from alignment at H-paniculata_contig889:13028..15271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTGCCGCTACGCTGTTCGTGTTGAGAAGACGTTGGGAAGGCACTG
GCGTGTGCGGAGCGGGTCTGCTTTCCATGTTTTACTCCACCGCCCGTGTC
AAGCCGAAGTTTTACAGTCACCTGGTTGTTCTGAAGGAGATACGTCTGTG
ACAGTTCCAGACAACACAGATAGCCCCATCACTGGCTCGACGGGACACGA
ATCTCAGACATCATCACTTCCTGCTACTTCGGCCAGTAGAAATGACTGGA
AAGAGGCACAGCAGGTGCAAGTAGGTTCGTCATCACCGCCGATGCTCAGG
GGGTTATGGACGGAGCTTTCGCAGCAAACGATAGGCAGCCGCCGGCGAGG
CGAGTCAAGGACGAATTCCACGTGCAACATGGGAGCGGCTTGGCATCATC
ACAGGAACCAAAGGAAACACCAAATATACTCTTCTGAAAGCCATCGAAGC
GTCCGAGATGTCTACTGGCGAAGATTGAACGCAGCAAGAAGGCAAGGAAA
CTGGAAAGAGGTGGAGAGAGTGCTGATGGAAGCCTTTGATCACACAGAGG
CGAGTCAGGTTGTCGACGTGAGGATGTGCAACCTTACGATGCGCACTGTT
GCCGCCGAGGGAAGGTGGCAGAATGCGCTGACCATATTTGACCGCATGAG
ACGAGAGGGATTGCAGCCGGATCAGCGCAGCTATAGCGCAGTCATTGCAG
CTTGTGGTAAAGATTGGACAAGAGCTGTGAACCTGCTAAGGGAAATGCAG
GCCAAGGACAGTGTAGTCCCTCCAGATGCTGTTGTCTATAATGGGGTTGT
CACCGCATGCGCAAGGTGCGGCCAGTGGGAGCGGGCTGTAGGTCTGTTAA
AAGAAATGCAGATGAAGGGTGGAGCGGTTGCGCCTACGGTCGTCAGCTAC
AATGCAGCCATCACAGCCTGCGGGGAGGGGGGACAGTGGGAGCAGGGTTT
GCAGCTTTTGGAAGAGATGCAAGTGGAGGGTGGCGGCATCACTCCTGATG
TCATCAGCTATAGCGCAGCGATTAAGGCGTGCGGAGATGCTGGCCAATGG
GAGAAGGCTGTGGGACTCCTACGGGAGATGCAGACGGGAGAAAACCCGGT
ATCTCCTTCAGTGGTCAGCTACAGTGCAGCAATCATTGCATGCGCTAAGG
ATGGCAAATGGGAACAGGCCGTAGGGCTATTAAGGGTAATGCAGACTGGT
GGGAGAGCTATCGCGCCGAAGCAAGTTCACTACAACGCGACTATCACCGC
ATGTGCACGAGCTAGGGAGTGGAGAAGAGCTGTCGATTTATTGAGAGAAA
TGCAGCAGAAGCGTTCCTCGGTGACCCCAAATGTTGTCACCTACAACACT
GCCATCACGGCATGCGGTGAGAGTGGTCAGTGGAAGCAAGCTCTGGCTCT
TTTCAAGGAGATGCAGGGGAAGCGCCGAGCTATCGCACCTGATGTTGTGA
GCTACACGGCGGCAATGAAGGCGATGACTTGCCGCTACGCTGTTCGTGTT
GAGAAGACGTTGGGAAGGCACTGGCGTGTGCGGAGCGGGTCTGCTTTCCA
TGTTTTACTCCACCGCCCGTGTCAAGCCGAAGTTTTACAGTCACCTGGTT
GTTCTGAAGGAGATACGTCTGTGACAGTTCCAGACAACACAGATAGCCCC
ATCACTGGCTCGACGGGACACGAATCTCAGACATCATCACTTCCTGCTAC
TTCGGCCAGTAGAAATGACTGGAAAGAGGCACAGCAGGTGCAAGTAGGTT
CGTCATCACCGCCGATGCTCAGGGGGTTATGGACGGAGCTTTCGCAGCAA
ACGATAGGCAGCCGCCGGCGAGGCGAGTCAAGGACGAATTCCACGTGCAA
CATGGGAGCGGCTTGGCATCATCACAGGAACCAAAGGAAACACCAAATAT
ACTCTTCTGAAAGCCATCGAAGCGTCCGAGATGTCTACTGGCGAAGATTG
AACGCAGCAAGAAGGCAAGGAAACTGGAAAGAGGTGGAGAGAGTGCTGAT
GGAAGCCTTTGATCACACAGAGGCGAGTCAGGTTGTCGACGTGAGGATGT
GCAACCTTACGATGCGCACTGTTGCCGCCGAGGGAAGGTGGCAGAATGCG
CTGACCATATTTGACCGCATGAGACGAGAGGGATTGCAGCCGGATCAGCG
CAGCTATAGCGCAGTCATTGCAGCTTGTGGTAAAGATTGGACAAGAGCTG
TGAACCTGCTAAGGGAAATGCAGGCCAAGGACAGTGTAGTCCCTCCAGAT
GCTGTTGTCTATAATGGGGTTGTCACCGCATGCGCAAGGTGCGGCCAGTG
GGAGCGGGCTGTAGGTCTGTTAAAAGAAATGCAGATGAAGGGTGGAGCGG
TTGCGCCTACGGTCGTCAGCTACAATGCAGCCATCACAGCCTGCGGGGAG
GGGGGACAGTGGGAGCAGGGTTTGCAGCTTTTGGAAGAGATGCAAGTGGA
GGGTGGCGGCATCACTCCTGATGTCATCAGCTATAGCGCAGCGATTAAGG
CGTGCGGAGATGCTGGCCAATGGGAGAAGGCTGTGGGACTCCTACGGGAG
ATGCAGACGGGAGAAAACCCGGTATCTCCTTCAGTGGTCAGCTACAGTGC
AGCAATCATTGCATGCGCTAAGGATGGCAAATGGGAACAGGCCGTAGGGC
TATTAAGGGTAATGCAGACTGGTGGGAGAGCTATCGCGCCGAAGCAAGTT
CACTACAACGCGACTATCACCGCATGTGCACGAGCTAGGGAGTGGAGAAG
AGCTGTCGATTTATTGAGAGAAATGCAGCAGAAGCGTTCCTCGGTGACCC
CAAATGTTGTCACCTACAACACTGCCATCACGGCATGCGGTGAGAGTGGT
CAGTGGAAGCAAGCTCTGGCTCTTTTCAAGGAGATGCAGGGGAAGCGCCG
AGCTATCGCACCTGATGTTGTGAGCTACACGGCGGCAATGAAGGCG
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