prot_H-paniculata_contig8889.16771.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8889.16771.1
Unique Nameprot_H-paniculata_contig8889.16771.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length80
Homology
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: A0A329R4P6_9STRA (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R4P6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.180e-19
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTVL 72
            VTTN +WPEIQ +L   Q   DRPD+  RVF + LK I+ ++ + +VFG+   +++VIEFQKRGLPHAH ++
Sbjct:   16 VTTNPKWPEIQNDLLPGQTASDRPDIVARVFNMKLKAILEDITTNRVFGDMQAYVYVIEFQKRGLPHAHVLV 87          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QLW8_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLW8_CHOCR)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  371 MTCNSSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVFAHVRVIEFQKRGLPHAHVV 441          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: A0A6A3P9V5_9STRA (Helitron_like_N domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3P9V5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.460e-18
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTVL 72
            VTTN +WPEIQ NL   Q P DRPD+  RVF++ LK I+ ++   +VFG+    ++VIEFQKRGLPHAH ++
Sbjct:   57 VTTNPKWPEIQANLLPGQTPSDRPDIVTRVFKMKLKAILKDITKKRVFGDMQAFVYVIEFQKRGLPHAHILI 128          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QUK6_CHOCR (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUK6_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.860e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  414 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 484          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QIU0_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIU0_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  368 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVSHVRVIEFQKRGLPHAHVV 438          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QNE4_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNE4_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  370 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 440          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QEU5_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEU5_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  370 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 440          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QDY2_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDY2_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  399 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 469          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QTD3_CHOCR (ATP-dependent DNA helicase n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QTD3_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  408 MTCNPSWPEITRPLLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 478          
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QUE5_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUE5_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 71
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  484 MTCNPSWPEITRPLLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 554          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329R4P6_9STRA3.180e-1951.39Helitron_like_N domain-containing protein (Fragmen... [more]
R7QLW8_CHOCR1.370e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
A0A6A3P9V5_9STRA1.460e-1854.17Helitron_like_N domain-containing protein n=1 Tax=... [more]
R7QUK6_CHOCR1.860e-1859.15Helitron_like_N domain-containing protein (Fragmen... [more]
R7QIU0_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QNE4_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QEU5_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QDY2_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QTD3_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=2 Tax=Chondrus crispu... [more]
R7QUE5_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025476Helitron helicase-like domainPFAMPF14214Helitron_like_Ncoord: 2..72
e-value: 4.3E-21
score: 76.0
NoneNo IPR availablePANTHERPTHR10492UNCHARACTERIZEDcoord: 2..69
NoneNo IPR availablePANTHERPTHR10492:SF66coord: 2..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8889contigH-paniculata_contig8889:5138..5377 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8889.16771.1mRNA_H-paniculata_contig8889.16771.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8889 5138..5377 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8889.16771.1 ID=prot_H-paniculata_contig8889.16771.1|Name=mRNA_H-paniculata_contig8889.16771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGE
YDYHMHVIEFQKRGLPHAHTVLKFNYFPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron_helicase-like