mRNA_H-paniculata_contig8889.16771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8889.16771.1
Unique NamemRNA_H-paniculata_contig8889.16771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: A0A329R4P6_9STRA (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R4P6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.180e-19
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTVL 216
            VTTN +WPEIQ +L   Q   DRPD+  RVF + LK I+ ++ + +VFG+   +++VIEFQKRGLPHAH ++
Sbjct:   16 VTTNPKWPEIQNDLLPGQTASDRPDIVARVFNMKLKAILEDITTNRVFGDMQAYVYVIEFQKRGLPHAHVLV 87
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QLW8_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLW8_CHOCR)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  371 MTCNSSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVFAHVRVIEFQKRGLPHAHVV 441
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: A0A6A3P9V5_9STRA (Helitron_like_N domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3P9V5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.460e-18
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTVL 216
            VTTN +WPEIQ NL   Q P DRPD+  RVF++ LK I+ ++   +VFG+    ++VIEFQKRGLPHAH ++
Sbjct:   57 VTTNPKWPEIQANLLPGQTPSDRPDIVTRVFKMKLKAILKDITKKRVFGDMQAFVYVIEFQKRGLPHAHILI 128
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QUK6_CHOCR (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUK6_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.860e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  414 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 484
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QIU0_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIU0_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  368 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVSHVRVIEFQKRGLPHAHVV 438
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QNE4_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNE4_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  370 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 440
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BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QEU5_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEU5_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  370 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 440
[Close]
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QDY2_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDY2_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  399 MTCNPSWPEITRALLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 469
[Close]
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QTD3_CHOCR (ATP-dependent DNA helicase n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QTD3_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  408 MTCNPSWPEITRPLLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 478
[Close]
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Match: R7QUE5_CHOCR (ATP-dependent DNA helicase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUE5_CHOCR)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGEYDYHMHVIEFQKRGLPHAHTV 213
            +T N  WPEI R L  +Q P DRPDLC RVFRL +K +MS + + +VFG    H+ VIEFQKRGLPHAH V
Sbjct:  484 MTCNPSWPEITRPLLPNQTPQDRPDLCARVFRLKMKDLMSLVINEEVFGTVVAHVRVIEFQKRGLPHAHVV 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8889.16771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329R4P6_9STRA3.180e-1951.39Helitron_like_N domain-containing protein (Fragmen... [more]
R7QLW8_CHOCR1.370e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
A0A6A3P9V5_9STRA1.460e-1854.17Helitron_like_N domain-containing protein n=1 Tax=... [more]
R7QUK6_CHOCR1.860e-1859.15Helitron_like_N domain-containing protein (Fragmen... [more]
R7QIU0_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QNE4_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QEU5_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QDY2_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]
R7QTD3_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=2 Tax=Chondrus crispu... [more]
R7QUE5_CHOCR1.880e-1859.15ATP-dependent DNA helicase n=1 Tax=Chondrus crispu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8889contigH-paniculata_contig8889:5138..5377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.7
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog3712.Bo5g025300.1
KEGG koko:K07466,ko:K15255
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase
EggNOG OGs37Q72@33090,3GCCF@35493,3HWI1@3699,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03032,ko03400
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.5933814-CDS-H-paniculata_contig8889:5137..53771622931111.5933814-CDS-H-paniculata_contig8889:5137..5377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8889 5138..5377 +
1691481595.302979-CDS-H-paniculata_contig8889:5137..53771691481595.302979-CDS-H-paniculata_contig8889:5137..5377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8889 5138..5377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8889.16771.1prot_H-paniculata_contig8889.16771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8889 5138..5377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8889.16771.1

>prot_H-paniculata_contig8889.16771.1 ID=prot_H-paniculata_contig8889.16771.1|Name=mRNA_H-paniculata_contig8889.16771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
VTTNLEWPEIQRNLKRHQVPDDRPDLCCRVFRLNLKKIMSELKSGKVFGE
YDYHMHVIEFQKRGLPHAHTVLKFNYFPL*
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mRNA from alignment at H-paniculata_contig8889:5138..5377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8889.16771.1 ID=mRNA_H-paniculata_contig8889.16771.1|Name=mRNA_H-paniculata_contig8889.16771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig8889:5138..5377+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACAACGAATCTCGAATGGCCAGAAATACAGCGCAATTTGAAGCGCCA
CCAAGTACCTGATGACCGACCTGATTTGTGCTGCCGTGTATTTAGATTGA
ACCTGAAGAAAATTATGTCAGAGTTAAAAAGTGGTAAGGTGTTCGGCGAG
TACGATTATCACATGCACGTCATCGAATTCCAGAAACGCGGTTTGCCTCA
CGCTCACACCGTCCTGAAATTCAATTATTTTCCCTTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8889:5138..5377+

>mRNA_H-paniculata_contig8889.16771.1 ID=mRNA_H-paniculata_contig8889.16771.1|Name=mRNA_H-paniculata_contig8889.16771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig8889:5138..5377+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACAACGAATCTCGAATGGCCAGAAATACAGCGCAATTTGAAGCGCCA
CCAAGTACCTGATGACCGACCTGATTTGTGCTGCCGTGTATTTAGATTGA
ACCTGAAGAAAATTATGTCAGAGTTAAAAAGTGGTAAGGTGTTCGGCGAG
TACGATTATCACATGCACGTCATCGAATTCCAGAAACGCGGTTTGCCTCA
CGCTCACACCGTCCTGAAATTCAATTATTTTCCCTTATGAGTTACAACGA
ATCTCGAATGGCCAGAAATACAGCGCAATTTGAAGCGCCACCAAGTACCT
GATGACCGACCTGATTTGTGCTGCCGTGTATTTAGATTGAACCTGAAGAA
AATTATGTCAGAGTTAAAAAGTGGTAAGGTGTTCGGCGAGTACGATTATC
ACATGCACGTCATCGAATTCCAGAAACGCGGTTTGCCTCACGCTCACACC
GTCCTGAAATTCAATTATTTTCCCTTATGA
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