prot_H-paniculata_contig8885.16769.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8885.16769.1
Unique Name	prot_H-paniculata_contig8885.16769.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	126

Homology

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 9.420e-72
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 124
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 3.230e-70
Identity = 115/123 (93.50%), Postives = 119/123 (96.75%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 123
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.860e-66
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KK  +RSAKAGLQFPVGRIGRF+KQGKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.200e-66
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.130e-65
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.480e-64
Identity = 102/123 (82.93%), Postives = 117/123 (95.12%), Query Frame = 0

Query:    3 GKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKKA 125
            GKGKGGRGD KK++++SAKAGLQFPVGR+GRFLKQG+YA RVG+GAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK   K+
Sbjct:    5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKS 126

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.790e-64
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.790e-64
Identity = 106/123 (86.18%), Postives = 114/123 (92.68%), Query Frame = 0

Query:    1 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 123
            MSGKGKGGRG  KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRGG-KKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC)

HSP 1 Score: 199 bits (506), Expect = 9.450e-64
Identity = 99/121 (81.82%), Postives = 114/121 (94.21%), Query Frame = 0

Query:    3 GKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 123
            GKGKGGRGD K++ + S+KAGLQFPVGRIGR+L+QGKYA+R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK +K
Sbjct:   10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKKTIK 130

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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.000e-63
Identity = 104/126 (82.54%), Postives = 114/126 (90.48%), Query Frame = 0

Query:    1 MSGKGKGGRG-DTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKKA 125
            M+GKGKGGRG + KKS ++S+KAGLQFPV R+GRFLK G+YA RVG+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK    A
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASAA 126

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	9.420e-72	93.55	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	3.230e-70	93.50	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	1.860e-66	90.00	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6H5KG79_9PHAE	2.200e-66	90.00	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7FVQ5_ECTSI	1.130e-65	90.00	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A835ZLE9_9STRA	2.480e-64	82.93	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A448ZH28_9STRA	2.790e-64	86.67	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U2JFS4_9STRA	2.790e-64	86.18	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
B7FZS7_PHATC	9.450e-64	81.82	Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=...	[more]
A0A836CG77_9STRA	1.000e-63	82.54	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 43..58 score: 86.55 coord: 100..118 score: 76.04 coord: 58..71 score: 90.54 coord: 72..86 score: 74.98 coord: 14..36 score: 68.53
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..123 e-value: 7.2E-79 score: 278.0
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..125 e-value: 5.2E-62 score: 209.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 5..124
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..89 e-value: 1.0E-15 score: 58.2
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 92..125 e-value: 6.9E-19 score: 67.3
None	No IPR available	PANTHER	PTHR23430:SF251		coord: 8..125
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..125
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 22..28

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8885	contig	H-paniculata_contig8885:3799..4176 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8885.16769.1	mRNA_H-paniculata_contig8885.16769.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8885 7..4270 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8885.16769.1 ID=prot_H-paniculata_contig8885.16769.1|Name=mRNA_H-paniculata_contig8885.16769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPV
YLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGE
VTIASGGVLPNIHAVLLPKKVVKKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR032454	Histone_H2A_C
IPR032458	Histone_H2A_CS