mRNA_H-paniculata_contig8885.16769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8885.16769.1
Unique NamemRNA_H-paniculata_contig8885.16769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 9.880e-70
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 2 
Query:   95 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 466
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 1.180e-68
Identity = 123/154 (79.87%), Postives = 130/154 (84.42%), Query Frame = 2 
Query:   14 PARPARSQ----LSLYLFHRQ*STSAHLVYNMSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 463
            PA P  +Q    LS+Y      +T       MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   22 PAPPPTTQNIPPLSVYFITNSTTT-------MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.180e-65
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 2 
Query:   68 STSAHLVY--NMSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 454
            ++S+H  Y  NMSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   41 TSSSHSSYPPNMSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.770e-64
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:   95 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 454
            MSGKGKGGRG  KK  +RSAKAGLQFPVGRIGRF+KQGKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.110e-64
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:   95 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 454
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVG+GAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A7S3YXQ1_9EUKA (Histone H2A n=6 Tax=Lotharella TaxID=74819 RepID=A0A7S3YXQ1_9EUKA)

HSP 1 Score: 204 bits (520), Expect = 8.170e-63
Identity = 103/131 (78.63%), Postives = 118/131 (90.08%), Query Frame = 2 
Query:   68 STSAHLVYNMSGKGKGGRGDTK--KSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 454
            ST+   +Y MSGKGKGGR   K  KS TRSA+AGLQFPVGRI RFL++G+Y++RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK+ RI+PRH+QLA+RNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct:    2 STNPPTLYTMSGKGKGGRXXXKSVKSTTRSARAGLQFPVGRISRFLRKGRYSTRVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRTRIIPRHVQLAIRNDEELNKLLGDVTIAAGGVLPNIHAVLLPKK 132
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.600e-62
Identity = 106/129 (82.17%), Postives = 116/129 (89.92%), Query Frame = 2 
Query:   95 MSGKGKGGRG-DTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKKA*AK 478
            M+GKGKGGRG + KKS ++S+KAGLQFPV R+GRFLK G+YA RVG+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK    A AK
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASAAKAK 129
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.290e-62
Identity = 102/123 (82.93%), Postives = 117/123 (95.12%), Query Frame = 2 
Query:  101 GKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKKA 469
            GKGKGGRGD KK++++SAKAGLQFPVGR+GRFLKQG+YA RVG+GAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK   K+
Sbjct:    5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSKS 126
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BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.560e-62
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:   95 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 454
            MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
[Close]
BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.560e-62
Identity = 106/123 (86.18%), Postives = 114/123 (92.68%), Query Frame = 2 
Query:   95 MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 463
            MSGKGKGGRG  KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+G+GAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRGG-KKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8885.16769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI9_ECTSI9.880e-7093.55Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7G193_ECTSI1.180e-6879.87Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FVQ5_ECTSI1.180e-6585.50Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LLP0_ECTSI1.770e-6490.00Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KG79_9PHAE2.110e-6490.00Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3YXQ1_9EUKA8.170e-6378.63Histone H2A n=6 Tax=Lotharella TaxID=74819 RepID=A... [more]
A0A836CG77_9STRA1.600e-6282.17Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A835ZLE9_9STRA2.290e-6282.93Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A448ZH28_9STRA2.560e-6286.67Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U2JFS4_9STRA2.560e-6286.18Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8885contigH-paniculata_contig8885:7..4270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue4.6e-56
Seed eggNOG ortholog2880.D7G4I2
Preferred nameH2AFY
KEGG koko:K11251,ko:K16617
KEGG Pathwayko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.Histone H2A
EggNOG OGsCOG5262@1,KOG1756@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko04147
Exons2
Model size930
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8885.16769.1prot_H-paniculata_contig8885.16769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8885 3799..4176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.4308949-UTR-H-paniculata_contig8885:6..4631622931111.4308949-UTR-H-paniculata_contig8885:6..463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 7..463 -
1691481595.2305963-UTR-H-paniculata_contig8885:6..4631691481595.2305963-UTR-H-paniculata_contig8885:6..463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 7..463 -
1622931111.4474683-UTR-H-paniculata_contig8885:3797..37981622931111.4474683-UTR-H-paniculata_contig8885:3797..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 3798..3798 -
1691481595.2442145-UTR-H-paniculata_contig8885:3797..37981691481595.2442145-UTR-H-paniculata_contig8885:3797..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 3798..3798 -
1622931111.4881654-UTR-H-paniculata_contig8885:4176..42701622931111.4881654-UTR-H-paniculata_contig8885:4176..4270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 4177..4270 -
1691481595.2677941-UTR-H-paniculata_contig8885:4176..42701691481595.2677941-UTR-H-paniculata_contig8885:4176..4270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8885 4177..4270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931111.4706864-CDS-H-paniculata_contig8885:3798..41761622931111.4706864-CDS-H-paniculata_contig8885:3798..4176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8885 3799..4176 -
1691481595.253896-CDS-H-paniculata_contig8885:3798..41761691481595.253896-CDS-H-paniculata_contig8885:3798..4176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8885 3799..4176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8885.16769.1

>prot_H-paniculata_contig8885.16769.1 ID=prot_H-paniculata_contig8885.16769.1|Name=mRNA_H-paniculata_contig8885.16769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MSGKGKGGRGDTKKSMTRSAKAGLQFPVGRIGRFLKQGKYASRVGSGAPV
YLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGE
VTIASGGVLPNIHAVLLPKKVVKKA*
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mRNA from alignment at H-paniculata_contig8885:7..4270-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8885.16769.1 ID=mRNA_H-paniculata_contig8885.16769.1|Name=mRNA_H-paniculata_contig8885.16769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4264bp|location=Sequence derived from alignment at H-paniculata_contig8885:7..4270- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACTTCCTGCACCTGCTCGCCCAGCTAGGTCACAACTATCTCTATACC
TATTTCATCGCCAGTAATCTACCTCAGCCCATCTTGTATACAACATGTCT
GGTAAGGGAAAGGGCGGGCGTGGTGACACCAAGAAGTCGATGACTAGGTC
TGCCAAGGCTGGTCTACAGTTCCCCGTTGGCCGTATCGGCCGTTTCCTGA
AGCAAGGCAAGTATGCATCTCGTGTGGGTTCTGGCGCTCCTGTCTACCTG
GCAGCTGTGCTCGAGTACCTGACCGCCGAGGTGCTCGAGCTGGCGGGTAA
CGCTGCTCGTGACAATAAGAAGGCCCGCATCGTGCCCCGCCACATCCAGC
TAGCTGTGCGAAATGATGAGGAGCTGAACAAGCTCCTGGGTGAGGTAACA
ATCGCTTCGGGTGGTGTGCTTCCCAACATCCATGCCGTTCTCCTGCCGAA
GAAGGTTGTCAAGAAGGCGTAAGGTAACATGCGGTGTATTTATGGAGTCT
TTCTTGTTTTCAGCTACAAATTAAAAACTATATAAACCTGGTGTTTACTA
AACACCATCCTTTCGTCGAAAGAATAATACGCCGCACGAATATAGAGCAA
ATGGTGCGGGCATGGTCAAGTGTCTGTGGAGGTGCTGATTCTGCTGTGTA
GGGAGGGCAATTCATTCCAGATGAGGTATGTTCGGCGTGAGCTTGGTAGC
AAAAGAGGTGAGATGGCCCGAGCTATTCCAACGAAACCAGGAAGTGAGTT
TTAATGGTGATAATCATCGCTATCGTTTGTAGACAATTCAGGTAATGACA
TGAAAACACTTGACTTCTGTGTTGATACCGACTACCAACTGTTGTATTAA
GGTTGGGTATCACCTTTTTGCTACACTTGACTTTCGTCTTCTCCAGTCAT
AATTCAATATCTGACGTTGGCAACATGTTCACGTGGTAACTCGCTGTGGA
CGCACATCAATCAGGGCGATCAATCAACGAGAGGAACTTGACCCTGGAAA
GCTTACAAGCAACCCACACGCAACGGCTGCACGTAAGGACCGTTTTTCCT
GGTTTTATTCTCGATTTTTCTTCCGAAATTAGAAATCGTCAGAGTGGGAT
TCAAACTAACTCGGAAGTAGAATGGGCCTCACTGTAAATTACGTATCTTG
CGAGAGACACTCTGTACACGGCCAAACTTTTTTTTCTATATCGAACTGAA
TAGTTACCGCAATTTTCTTTTGGAAAAATGGAACGGAGGAAAAACCGTTC
ATCGTTCATCACGGCTCTACTGTAATTAGACTTGTTGCCAATGACTAAAC
ACCGATGGTTCATATGCTTGTCACAGGGGAGGGGAGCTTGAGTCCTTGTT
TGGATTTAAATAACGTCGTTGTAGTGTGCCACAAGAATACATAGCCCCAG
CCTACTTGCGTGCAGTTCGCGTTTCATCCTCTACCCACCACTAATATTTT
TGCCCTTGAAAGTAGGCACAGTTATCTGTGATGAATTGTACTTGAGAATT
TATTTGAGGGCACAGATTTGAAACAGCCGATCCTCGATATTTGGGATTAA
TCTCATTGAGGACGTTTCAGGTAAAACTTGATTTGACCTGTCAAACGCCA
AAAACCTAGGGGCGGAAAATACAGATTCTTCACTTTCTGTGGAATCCACC
TACGTTTTGCACCACTCTTTAAGCAGGGGCCTTCGGTGAACAATTACCCC
CCCCTACCGTTTTGCGGTACAAGTATCACGAATGAACATGTTTTGCAATG
AAATTATGTCACTGTGGATACGTAGTTTGATGAAGCAGAGCACAAGAAAA
AAGCCAACAGTCCCTGCTAACTTTGCGTAGCGCCGTTTGTGATCGTCTTG
TTTCATGTCTTTCGTAGCTGACGTCTGTAAAACGTCCGTGCAGCGACCAC
ATACACGAACAACTCTGCCAGTGGGATGTTAACCCATATATTTCGTATAC
CATGTATCACAAGCAGATTTTATTTAATCGAGCGTGGATTACACCCTTCC
GCCCTTTGCATCGTTGCCGCTGCTCATGTGACCACACAACCAGCCCCCTC
CCTCAGACGGTCGCTCATCGCATCCACCGTGTACTTCGCAGTTTCCCATC
AACACGTTAGATGGCGTCACGAAACAAATACTGCAAAATATCATGTGTAC
AATCACCAGTGGCTGGCATTTAGTTTTGCGCTTCAACATCAATGCACCCC
ATTTAGCGGCTCTGATACATCCCAATTTATACTGTGCATCACCTTCGAGT
CCAAAATGAAACCTACCACCAACATGGGTGTCCTCTGACATTGAATTCGA
CATGATTGATACATCACGCACAACACCCACTCGCATATCTGGCTTAAGAG
TCCAAGACAAGCTTGATATGTTATAACCAAGTCGCCGCTACAACCGTACG
CCTGCTTGCTCCCATGGATGAAATGCATAATATGGCTGCATATCGCCTAC
ATCGTACACGCTATCCCTATCTCCACTAGCTAAAACACTGGGGGAGGGTG
TATATGTGCTGCACCTAACCGCTGCTGAACCCCCTCCTCGTGAGGACATT
GCGTGCCTCCTCGTTCCTTGTAAGTAGCATCCTTCCCATGGCTTTCCTCC
CTCATCACAACCAACGAATTTTGACAGCACTTGTTGGATACCCAATTGTC
CATTGTTCGCCTATCCTCCCTCCAACGGAACCAAGGCGTCCGCTACAGTC
AGTGGAATACACATACATGACTATCAGGTGTAAAGACAAAAATACACGCC
TTGAAGCGATTGGTATTATGTACTGTCGCAACGCCAAGCTGCTGAATATA
CACCCCCAGTCTCAAGTAAAGGCCATAAAAGAACAAATTGCGTCACACGT
CACTCCGGCTGTATTTGGTTAAAGCTCAAAAAATCCAACTTAAATGACCA
AAATAAATCATCATGTGCGCCTTCACTGTCTTGAAGCAGTGTTTATGCAA
CCAAAACAGGACAAGCTACTCGAAATGTTGAACTCATTCACTATTCGTTA
TATAATATAGTCGAATATTATGAAGTAGAAAAATCATTGAATTATTATAG
CCTTGCAAATTATTATAGAAATTTAGTTGCTGAAATTCATGGTAATACAA
CGACCTAAACCGGTGCCCATACCAGTCGGTCAAAGCCATTGGGATTCGGA
ATGTGCGTTGCCCCTGCCGCCAAGGCTCCGCTAAGAGGAAAAGACCCGAA
CCCCCCACAATCATGCATATCTCCTTCCAATCGAGAATATTCACTTTGTG
GTCGACACGTTGCACCTTCAGCATCCGATCCAGGGAATGGTGCTTCAAGT
TCAGGGCTGTGACAACGAGAGGTAGACATGAAGTATTAGCGGCCAGGGAC
AACGCGGGACAGTGCGCACGTATTTTCAGAGTAACGTGGGAAAGCTAGAC
TGCAGTTCCAGAGTGCATGGTGCATGGCCTAGAGCAAGAGATTACAGAGG
GAAATCGATAGAAACAGTTCAGTTGTTTACCGCGCGGGAGCACCACGTAA
AATCGCATTGTATGTGAGGTTCACCATTCTTAGTGTTGAAGCCATGCCTG
CCCGTGACGTGAGTGCATATTTGATTGAGCCAAAGATGGGGGGCGTGTTT
GAAAAATGAGAAGCCGAAGACGAACGACCAATTTCCTCTTCAACGAGCAA
AATAAAAAAGTAATTATAAGGATAACAGTCCAACCTCTTGTCGCCGGCAC
GTGCCCATCGCCCCGGTAATCGCACCTCCTCGCGAGCCAAGCCCCACCTT
GTTGTCCTGAGCACCCGCCCCTGCCCCCCAAATCTGTCATACCTGTTGCC
CTATCAGCCAAGAGGATCTTTTGCCTTGTAAGGAGCATCTGTAAAGATAT
TCCTCGAGCAACAAGACCTGATGACTGAAGGGCAGCGAGATTTCGCTACT
ATTAGCAATATACGAAAGTGCTTGGACAGCCTAAGCCAGCGGAAATGTGA
TGTTCAATCGCCTCTACAGTCTTGGCAAGGGTAAAGCTGTCGTCGTGGCG
TGTTACTTTCGGCGTTGCGCTCCAATAGGGGGTGCTGGTATGGTGCTGGT
ATATTGAGTGGTGCATATGCTTTCGTGAAGCACTGAAGCATCAAGACGAG
TCTTGCTGTTATTGAAGCACTCCATTGGTATGAAGAAAATAGAGAGGATA
CTCTTCAAGTGGGTGCAACCCCCACACTGCCTACTTGGTTCGGCCGAACC
GGGGTGGCGCCTACCCCGCAGAGGAATAAATAACTGTTCTGTTGAAGGAA
ATGTAGAAATACTT
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Coding sequence (CDS) from alignment at H-paniculata_contig8885:7..4270-

>mRNA_H-paniculata_contig8885.16769.1 ID=mRNA_H-paniculata_contig8885.16769.1|Name=mRNA_H-paniculata_contig8885.16769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig8885:7..4270- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGTAAGGGAAAGGGCGGGCGTGGTGACACCAAGAAGTCGATGAC
TAGGTCTGCCAAGGCTGGTCTACAGTTCCCCGTTGGCCGTATCGGCCGTT
TCCTGAAGCAAGGCAAGTATGCATCTCGTGTGGGTTCTGGCGCTCCTGTC
TACCTGGCAGCTGTGCTCGAGTACCTGACCGCCGAGGTGCTCGAGCTGGC
GGGTAACGCTGCTCGTGACAATAAGAAGGCCCGCATCGTGCCCCGCCACA
TCCAGCTAGCTGTGCGAAATGATGAGGAGCTGAACAAGCTCCTGGGTGAG
GTAACAATCGCTTCGGGTGGTGTGCTTCCCAACATCCATGCCGTTCTCCT
GCCGAAGAAGGTTGTCAAGAAGGCGTAAATGTCTGGTAAGGGAAAGGGCG
GGCGTGGTGACACCAAGAAGTCGATGACTAGGTCTGCCAAGGCTGGTCTA
CAGTTCCCCGTTGGCCGTATCGGCCGTTTCCTGAAGCAAGGCAAGTATGC
ATCTCGTGTGGGTTCTGGCGCTCCTGTCTACCTGGCAGCTGTGCTCGAGT
ACCTGACCGCCGAGGTGCTCGAGCTGGCGGGTAACGCTGCTCGTGACAAT
AAGAAGGCCCGCATCGTGCCCCGCCACATCCAGCTAGCTGTGCGAAATGA
TGAGGAGCTGAACAAGCTCCTGGGTGAGGTAACAATCGCTTCGGGTGGTG
TGCTTCCCAACATCCATGCCGTTCTCCTGCCGAAGAAGGTTGTCAAGAAG
GCGTAA
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