prot_H-paniculata_contig8861.16753.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8861.16753.1
Unique Nameprot_H-paniculata_contig8861.16753.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length169
Homology
BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Match: D7G486_ECTSI (Mitochondrial TOM complex subunit, Tom40 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G486_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.930e-54
Identity = 111/168 (66.07%), Postives = 127/168 (75.60%), Query Frame = 0
Query:    1 GETFSGLVVAGAGPLFGIAYNQALTPRLTVGGDGNFNMAQQATQLQYGFKYNTPGWAFTGCLIGAGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENSQASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSLDHGEDQKATFGLGLSLGQ 168
            G+T SG +  G GP   I+YNQA+TP L++GG G F+ AQQA  L YGFKYNTP WA  G LIG GG ++V AQY+RRVVPGRVTL AEYQA L +   SQ  VGAEF L+QSK+SASVDS GKVDSTLE+K  TF P LPVTLT+SSSLDH ED K TFGL L+ GQ
Sbjct:  281 GDTCSGQISLGTGPTE-ISYNQAVTPHLSMGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIG-GGANVVTAQYLRRVVPGRVTLGAEYQAQLGA--GSQMMVGAEFQLKQSKMSASVDSNGKVDSTLELKCGTF-PTLPVTLTISSSLDHSED-KQTFGLALTCGQ 442          
BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Match: K0SVA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVA5_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 3.250e-9
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   65 AGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENSQASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSLDHGEDQKATFGLGLSLG 167
            AG G + +  Y R V PGRVT+ A  + + ++ E SQA+VGAEF+L +SK++  VDS+G++ S LE KL    P  P  L+ ++ LDHG++    FG GL++G
Sbjct:   22 AGQGALTL-NYKRAVTPGRVTVGAMLECSPVTLE-SQAAVGAEFSLTRSKMNVCVDSSGRIQSVLESKLGRE-PGGPA-LSFAAELDHGKNVMK-FGYGLNIG 119          
BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Match: A0A1X6P7L0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7L0_PORUM)

HSP 1 Score: 59.3 bits (142), Expect = 2.460e-7
Identity = 52/149 (34.90%), Postives = 74/149 (49.66%), Query Frame = 0
Query:   19 AYNQALTPRLTVGGDGNFNMAQQATQLQYGFKYNTPGWAFTGCLIGAGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENSQASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSLDHGEDQKATFGLGLSLG 167
            +Y Q++TP ++VGG G + + +Q + L    KY   G   T  +   G    V+  YMRRV P R  LAAE      S E S  + G  + LR + +   VDS G+V +++E K+      L     LS  +DH   Q+  FG GL LG
Sbjct:  171 SYLQSVTPTVSVGGQGFYQVKEQFSALTAAVKYADGGDLATATVASYG---PVIVTYMRRVNP-RFALAAEMFVDARSRE-SLVTAGYRYDLRGATVVGQVDSNGRVATSVEEKIAPGFSFL-----LSGEVDHAA-QEYRFGFGLQLG 308          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G486_ECTSI1.930e-5466.07Mitochondrial TOM complex subunit, Tom40 homolog n... [more]
K0SVA5_THAOC3.250e-943.69Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1X6P7L0_PORUM2.460e-734.90Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023614Porin domain superfamilyGENE3D2.40.160.10coord: 11..168
e-value: 3.4E-5
score: 25.2
IPR027246Eukaryotic porin/Tom40PFAMPF01459Porin_3coord: 12..161
e-value: 2.0E-14
score: 53.7
IPR037930Tom40PANTHERPTHR10802MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40coord: 13..168
NoneNo IPR availablePANTHERPTHR10802:SF2MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 HOMOLOG 1-RELATEDcoord: 13..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8861contigH-paniculata_contig8861:138..3928 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8861.16753.1mRNA_H-paniculata_contig8861.16753.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8861 138..3928 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8861.16753.1 ID=prot_H-paniculata_contig8861.16753.1|Name=mRNA_H-paniculata_contig8861.16753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
GETFSGLVVAGAGPLFGIAYNQALTPRLTVGGDGNFNMAQQATQLQYGFK
YNTPGWAFTGCLIGAGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENS
QASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSL
DHGEDQKATFGLGLSLGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023614Porin_dom_sf
IPR027246Porin_Euk/Tom40
IPR037930Tom40