mRNA_H-paniculata_contig8861.16753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8861.16753.1
Unique NamemRNA_H-paniculata_contig8861.16753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Match: D7G486_ECTSI (Mitochondrial TOM complex subunit, Tom40 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G486_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.930e-54
Identity = 111/168 (66.07%), Postives = 127/168 (75.60%), Query Frame = 1 
Query:    1 GETFSGLVVAGAGPLFGIAYNQALTPRLTVGGDGNFNMAQQATQLQYGFKYNTPGWAFTGCLIGAGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENSQASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSLDHGEDQKATFGLGLSLGQ 504
            G+T SG +  G GP   I+YNQA+TP L++GG G F+ AQQA  L YGFKYNTP WA  G LIG GG ++V AQY+RRVVPGRVTL AEYQA L +   SQ  VGAEF L+QSK+SASVDS GKVDSTLE+K  TF P LPVTLT+SSSLDH ED K TFGL L+ GQ
Sbjct:  281 GDTCSGQISLGTGPTE-ISYNQAVTPHLSMGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIG-GGANVVTAQYLRRVVPGRVTLGAEYQAQLGA--GSQMMVGAEFQLKQSKMSASVDSNGKVDSTLELKCGTF-PTLPVTLTISSSLDHSED-KQTFGLALTCGQ 442
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BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Match: K0SVA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVA5_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 3.250e-9
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:  193 AGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENSQASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSLDHGEDQKATFGLGLSLG 501
            AG G + +  Y R V PGRVT+ A  + + ++ E SQA+VGAEF+L +SK++  VDS+G++ S LE KL    P  P  L+ ++ LDHG++    FG GL++G
Sbjct:   22 AGQGALTL-NYKRAVTPGRVTVGAMLECSPVTLE-SQAAVGAEFSLTRSKMNVCVDSSGRIQSVLESKLGRE-PGGPA-LSFAAELDHGKNVMK-FGYGLNIG 119
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BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Match: A0A1X6P7L0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7L0_PORUM)

HSP 1 Score: 59.3 bits (142), Expect = 2.460e-7
Identity = 52/149 (34.90%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:   55 AYNQALTPRLTVGGDGNFNMAQQATQLQYGFKYNTPGWAFTGCLIGAGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENSQASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSLDHGEDQKATFGLGLSLG 501
            +Y Q++TP ++VGG G + + +Q + L    KY   G   T  +   G    V+  YMRRV P R  LAAE      S E S  + G  + LR + +   VDS G+V +++E K+      L     LS  +DH   Q+  FG GL LG
Sbjct:  171 SYLQSVTPTVSVGGQGFYQVKEQFSALTAAVKYADGGDLATATVASYG---PVIVTYMRRVNP-RFALAAEMFVDARSRE-SLVTAGYRYDLRGATVVGQVDSNGRVATSVEEKIAPGFSFL-----LSGEVDHAA-QEYRFGFGLQLG 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8861.16753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G486_ECTSI1.930e-5466.07Mitochondrial TOM complex subunit, Tom40 homolog n... [more]
K0SVA5_THAOC3.250e-943.69Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1X6P7L0_PORUM2.460e-734.90Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8861contigH-paniculata_contig8861:138..3928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog2880.D7G486
Preferred nameTOMM40L
KEGG koko:K11518
KEGG TC3.A.8.1
KEGG Pathwayko05014,map05014
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0005048,GO:0005215,GO:0005216,GO:0005261,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0005743,GO:0005758,GO:0005773,GO:0005774,GO:0005829,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008324,GO:0008565,GO:0009628,GO:0009987,GO:0010941,GO:0010942,GO:0015031,GO:0015075,GO:0015267,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0019867,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022884,GO:0022890,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034220,GO:0034613,GO:0036293,GO:0036294,GO:0042221,GO:0042277,GO:0042719,GO:0042886,GO:0042887,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051204,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070678,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098655,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.protein import into mitochondrial matrix
EggNOG OGsKOG3296@1,KOG3296@2759
Ec32 ortholog descriptionMitochondrial TOM complex subunit, Tom40 homolog
Ec32 orthologEc-02_001720.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Exons4
Model size507
Cds size507
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8861.16753.1prot_H-paniculata_contig8861.16753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8861 138..3928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.0178308-CDS-H-paniculata_contig8861:137..3011622931109.0178308-CDS-H-paniculata_contig8861:137..301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 138..301 +
1691481594.2397869-CDS-H-paniculata_contig8861:137..3011691481594.2397869-CDS-H-paniculata_contig8861:137..301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 138..301 +
1622931109.0387878-CDS-H-paniculata_contig8861:980..11191622931109.0387878-CDS-H-paniculata_contig8861:980..1119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 981..1119 +
1691481594.2527797-CDS-H-paniculata_contig8861:980..11191691481594.2527797-CDS-H-paniculata_contig8861:980..1119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 981..1119 +
1622931109.0563145-CDS-H-paniculata_contig8861:1550..16371622931109.0563145-CDS-H-paniculata_contig8861:1550..1637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 1551..1637 +
1691481594.2725012-CDS-H-paniculata_contig8861:1550..16371691481594.2725012-CDS-H-paniculata_contig8861:1550..1637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 1551..1637 +
1622931109.080218-CDS-H-paniculata_contig8861:3811..39281622931109.080218-CDS-H-paniculata_contig8861:3811..3928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 3812..3928 +
1691481594.2824183-CDS-H-paniculata_contig8861:3811..39281691481594.2824183-CDS-H-paniculata_contig8861:3811..3928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8861 3812..3928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8861.16753.1

>prot_H-paniculata_contig8861.16753.1 ID=prot_H-paniculata_contig8861.16753.1|Name=mRNA_H-paniculata_contig8861.16753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
GETFSGLVVAGAGPLFGIAYNQALTPRLTVGGDGNFNMAQQATQLQYGFK
YNTPGWAFTGCLIGAGGGHMVMAQYMRRVVPGRVTLAAEYQAALLSPENS
QASVGAEFTLRQSKISASVDSAGKVDSTLEMKLLTFLPMLPVTLTLSSSL
DHGEDQKATFGLGLSLGQ*
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mRNA from alignment at H-paniculata_contig8861:138..3928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8861.16753.1 ID=mRNA_H-paniculata_contig8861.16753.1|Name=mRNA_H-paniculata_contig8861.16753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3791bp|location=Sequence derived from alignment at H-paniculata_contig8861:138..3928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGACGTTCTCCGGCCTGGTTGTGGCCGGAGCGGGTCCCTTGTTCGG
GATTGCTTACAACCAGGCGCTGACACCGAGATTGACGGTGGGGGGCGACG
GTAACTTCAATATGGCGCAGCAGGCGACGCAACTTCAGTACGGCTTCAAG
TACAACACCCCAGGGTAAGTTTCGAGATTCACTTTCCATAGGTACGAGTT
GTCACTCGTGCAAAGCACTCATTTGTGTCAACACCCGTGAAAATTTTGTG
TTTGGGAGGTACTACAGTATCTCGCATTGCTCGAGTGCACTAGTCCGATT
TTGGGGGAATTTGATACGCATTACTCGGGCGCACTCGTCTGACTGTTTGG
GAATCGTGACCCGCGGCATTAGTCGAGTACAAGATGGTCTCATAACGAAG
AGAAATAATCCTTGGCCCACAATTCTCTTGCGATATATCCAAAAAAAGTG
TACACTTGAACACATGTCCTAGACGACTTGGACAAGGCAAATACAATGCC
GTGGCCTGATTCGGGCTCCGAAGTTGTTGTTGGGTGAAGGATTCAAGATG
ATGAAATTTTAACCCAATCCACCCGTTTCGTTTTGATTTGTGCGGAATTT
GTCATGTTTCATTTTTTGAAAGTTGTGCCCTGACGCATGCGCGTGCATGC
ATCCATACCTCAGAGCAGCGGTAGCACCAGATGAAGCTATAGCTGCAGTG
CAACAATCAGAGAGAGATTTGCTCATGTCGTAATTATCGAGAATATAGTA
TCAAGCAAATTTTCATAGACCTACCTCATGGAGTACCATGTTTAACCCCC
GCCCTCCACGGTGATGTTCATTTCCCTTCCAAATTGATTCCAGGTGGGCG
TTCACAGGGTGTCTGATTGGTGCCGGCGGTGGCCATATGGTGATGGCACA
GTACATGAGACGGGTGGTACCGGGGCGCGTGACGCTTGCCGCGGAGTACC
AAGCGGCCCTCCTGAGCCCAGAGAATAGCCAGGTGCGGACTTTTTCGTAC
GCTGATGAAAAGTCATTATCCACTAAAATTGGTCATGTGCAAATTTTTTG
TGCATTATTTTAACCCATTTATCGAAATTTTTCTTCGCATATCGCCGCGG
GTTTTGGAATATGGCCTGTAACAGAATGAAGATAATTGCCTTCCCCAAAC
CCCATTCGAATCTTTTAATGGCTCAAGGTCCTTCCTCTTCACACCTTGGC
GGAATGTTCGACTTGTTATTAGAGCACCGGCGCACCTCCAGAGATGTCGA
GTGTGACGATGATAATGATGATTTCGATGGAAGTCATCTTGAAGGCTCCA
GGTTTTTATTTTTTTAAGGTGTGTTTGCTCGAAAATATTGATCTTGATCC
GAGCTAAGAAGTGTTGACACTGCTCGATGTTTCCACGTATATGGTCCTAA
CGTTTGTCGTCAGGCGTCTGTGGGGGCCGAATTCACTCTTCGACAGAGTA
AAATCTCGGCAAGCGTTGACAGCGCGGGAAAGGTGGACTCCACATTGGAG
GTGGGCACTACGTTCTAGTTGACGAGGGAGGCCAAATATCAGTACAGAAG
GGTTTTTCATGTGACCGGTACAGTCTGACGAGATGGAACCGACCGCGATG
CAACCGCAGTACGGATGAAAAAATCCAATAGAACCGGCTACGAACCGATT
ATATATACTCCCTCCGTCCCATAAGCCGAGGACACTCTGATCTCTCATTT
TTTTGTGTAAGCTGTTTCTCTACGAATACGAAGAGTTTTTCGGTTATGTA
TTGCTTGAATTGAATCTATGGACGTGATGTAAACTTGAATAAATATTTCG
GTTCGTTCTCGCATAGTGTTCCGAAATAGTTTCGAACATTTCGCGAGAAG
GGGAACAAAAAAACGGCCCTTTTCGGCTCCTTTTTAAGTGCCTGCGTTGC
ACCCGGCGGCGGACAAAGCGCCTCCCTATCATCACTCAACATGTCAGCAC
CTCGTCATGAGCTGTCCGACTCTCGTGCAGCCTCGAGACCGTCTGCGGCG
CGAGTTTTGCAACCAACATTACCACTCCAGCGAGTCTGGCATCTTTAGCT
GAGAGCCCATCTGCCCGGGGTAAAAACTGCGAGCTGAGCGAGGAAGGTCG
AAACTCGTTTGCCCTACGTTATGCTTTTCCGCTACCTTCCGGTAAGAAAC
AGCTTTCGAAAGGCGTTGGGCCAGAATTGGCGGAGCAGTTTGGAGTTGGT
GACCAATATCCCAAATAACTCTGGACGTGTGTACGAGGACAACTGGACCA
TGGCAACACCCATTCGCTGAAGTCGGCATCATGAAGCTGGCGGCCGTCGG
ACTTCATACCGGCAAAGCACGCCACGATTCGAACGGTCAACGCCGCGAAT
CGAGCCCAGACCCTCGATCAACTGTCTATCAAGCTAGCCGAAGTTGATCT
CGTAGCCGGCAGCTACTTGAGCGATGGGTCAAAAAGATAGGCGCCACGAG
GGCGCAAAGGCGCAGTTCTCCATCTCTGTGGCTGACGCACCAAAAGAATG
GGTATACTTCATCCTGGACCAAGCAGTAAGGACCCGCATCACTTTCAGGA
GTGGCTTCCAAACAATTCACATCGACGAAGCGGGGCTTTATCTAATTCGC
AGCAGGGATCACGTCCGTACGTTACCCAGGGAGGAAAGGGAGAAGTTCAC
CAAAGTATGGCACAAGAGTCACATTCCTAAGGTGATGCTCATCTGCGCCG
TTTCACGTCCAGATCTTCCCCACGATTTCGACGGCGAGATTGGAATCTGG
CGTGTTTGCGTCATCAAGCAGGCGCACAGGAAGTCGGCCCGGCGTGAACG
GGGGAAGCAATACAAGTTTGACGTGGCCATTGACGCCGAGTGGTACAAGG
AGAGGCACAAGGATTCTTTTCTCCCAGTATTGAAGAAAAAGATGCCGTGT
TTGGAGGGTGAGAAAATGGTCGCGCAGCAGGACGGAGTGACCTCCTACAC
GGGGAAAGACGCCGCGGAAGCTCAACGAACCCGGGAGGGACGGGGGTTGG
AACGTCAATCTCGTAACTCAGTCGGCACAGTCACCGGATCTCAACATCAA
CGATTTGGGTTTCTTTTCATGTCTGAAAAGTAGAGTTTGAAGGGAGTAAA
TAGCATGTACGATGCGTAGGACGCGGCAACCTTGCAGAGGATGTGGCAGA
GCCTCTTTCAGCGGTAGAATTAGGTCTTGAAGGCGCTAGGAGGTAACGAT
TTCGAGGCACAGCATACCGAAACCAAGAAAAGGCAGTGTGCGCGAAGTTT
GCCAAAATCCGTCAAAATCAAAAAAGAGGCTTTCGATGCGGCGGTAGACC
GGTGAATTGATGGGAAGGAGGAAAGTGACGGAAGAAAAAAATTAACGTGA
AAAACACCGAGGATCCGACGCAGAGAACCGTTTTTGATTCAATGGTGATT
GCAACAAGGTACACCCTTAACGTCGCAGACTTGAAGAACCGAGGGATTAT
TAATTGTGAAAGAATCAACCATATCGCTGACCCTTCTCTGGTCTGATTCT
AGTCATGTATACAACAGTTGGTCATTTGGCAAGCTCTGAAATACGGTACC
GAGTGTATTTTATATATTAACACTGTCCCTTCTCCGTTCTCTTGTCCTAA
CTGGCAATCTTCGAATGTCCGCCGTTGTATTGTGTTTGATGTTGCTGTCT
GCCTTCCGTGCCCTCTGTATCTAGATGAAGCTGTTAACATTCTTGCCCAT
GCTGCCCGTCACCCTCACATTGTCGAGCTCGTTGGACCATGGGGAGGACC
AAAAAGCCACGTTTGGCTTAGGGCTAAGTCTGGGGCAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8861:138..3928+

>mRNA_H-paniculata_contig8861.16753.1 ID=mRNA_H-paniculata_contig8861.16753.1|Name=mRNA_H-paniculata_contig8861.16753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig8861:138..3928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGACGTTCTCCGGCCTGGTTGTGGCCGGAGCGGGTCCCTTGTTCGG
GATTGCTTACAACCAGGCGCTGACACCGAGATTGACGGTGGGGGGCGACG
GTAACTTCAATATGGCGCAGCAGGCGACGCAACTTCAGTACGGCTTCAAG
TACAACACCCCAGGGGCGAGACGTTCTCCGGCCTGGTTGTGGCCGGAGCG
GGTCCCTTGTTCGGGATTGCTTACAACCAGGCGCTGACACCGAGATTGAC
GGTGGGGGGCGACGGTAACTTCAATATGGCGCAGCAGGCGACGCAACTTC
AGTACGGCTTCAAGTACAACACCCCAGGGTGGGCGTTCACAGGGTGTCTG
ATTGGTGCCGGCGGTGGCCATATGGTGATGGCACAGTACATGAGACGGGT
GGTACCGGGGCGCGTGACGCTTGCCGCGGAGTACCAAGCGGCCCTCCTGA
GCCCAGAGAATAGCCAGGTGGGCGTTCACAGGGTGTCTGATTGGTGCCGG
CGGTGGCCATATGGTGATGGCACAGTACATGAGACGGGTGGTACCGGGGC
GCGTGACGCTTGCCGCGGAGTACCAAGCGGCCCTCCTGAGCCCAGAGAAT
AGCCAGGCGTCTGTGGGGGCCGAATTCACTCTTCGACAGAGTAAAATCTC
GGCAAGCGTTGACAGCGCGGGAAAGGTGGACTCCACATTGGAGGCGTCTG
TGGGGGCCGAATTCACTCTTCGACAGAGTAAAATCTCGGCAAGCGTTGAC
AGCGCGGGAAAGGTGGACTCCACATTGGAGATGAAGCTGTTAACATTCTT
GCCCATGCTGCCCGTCACCCTCACATTGTCGAGCTCGTTGGACCATGGGG
AGGACCAAAAAGCCACGTTTGGCTTAGGGCTAAGTCTGGGGCAGTAAATG
AAGCTGTTAACATTCTTGCCCATGCTGCCCGTCACCCTCACATTGTCGAG
CTCGTTGGACCATGGGGAGGACCAAAAAGCCACGTTTGGCTTAGGGCTAA
GTCTGGGGCAGTAA
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