prot_H-paniculata_contig8858.16752.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8858.16752.1
Unique Nameprot_H-paniculata_contig8858.16752.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length189
Homology
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: G4TTI1_SERID (Related to retrotransposon HobS hobase (N-terminal) (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TTI1_SERID)

HSP 1 Score: 117 bits (292), Expect = 2.490e-29
Identity = 71/194 (36.60%), Postives = 114/194 (58.76%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTTDPCLYFSRD----EGGEADILVAVHIYDLIIARRREKADEF-KHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLKIY 189
            EP ++ E LK P+ DK+  A  EE  A ++NGTW+     ++P G+KAI ++W+FK K   DGS+++ K R++A+G++Q EG D+ ET  P AR   LRT         +  D    E     I+V VHI DL++A +   A +  K+ +    +++D G  S +L +++ RDR + T+S+SQ  YI ++L+ Y
Sbjct:    3 EPTTLGEALKRPDGDKYVQAATEEVRAHLENGTWKLV---RLPQGKKAIGSRWVFKIKRDADGSISKYKGRIVAKGYAQREGIDYTETFTPTARFGALRTIIALAALEDWELDVFIYECDNVKIIVPVHIDDLLLASKSPDAIQIVKNELKARFKIRDQGPTSFLLGVKLERDRQSRTISLSQPAYIEQILETY 193          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: Q53MQ5_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53MQ5_ORYSJ)

HSP 1 Score: 122 bits (307), Expect = 5.920e-29
Identity = 67/187 (35.83%), Postives = 117/187 (62.57%), Query Frame = 0
Query:    2 PKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTR-STTDPCLYFSRDEGGEADILVAVHIYDLII-ARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            PKS++E   SP+ D W+ A+  E  +++ NGTWE  +    P G K +  KW+FK+KL+ DG++ + KARL+A+G++Q EGEDFF+T +PVAR++T+R   +  D C+Y+ R  GGE  +++ +++ D++I     E  +E K  + +   MKDLG     +++ ++  R    +++ Q  Y+ ++L
Sbjct:  776 PKSISEAYASPDADYWKEAVHSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRFAVNEADKCVYY-RHGGGEG-VILCLYVDDILIFGTNLEVINEVKSFLFQNFDMKDLGVAD--VILNIKLIRGENEITLLQSHYVEKIL 955          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A401GPA3_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GPA3_9APHY)

HSP 1 Score: 121 bits (304), Expect = 1.460e-28
Identity = 74/200 (37.00%), Postives = 109/200 (54.50%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVA-----------RMSTLR-TRSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRREKA-DEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLK 187
            EP+S+ E   SPE  +W  A++ E+  L   GTWE +D   +P  R A+  KW+F+RK  ++G V + KARL+AQG+SQ+ G DF ET APV             ++ L   R   DPC+Y    + GE  I + V + DL++     K  +E K ++     + DLG   +++ IE+ RDR  GT+ I Q  YI  +LK
Sbjct:  838 EPRSLTEAQASPEWSEWEKAVKAEYDQLQGMGTWELQD---LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVQSGCEWNRKLHRELTELGYKRLEADPCVYLRERKEGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREVGTLQILQQHYIESILK 1033          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A7N2RFG7_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2RFG7_QUELO)

HSP 1 Score: 115 bits (288), Expect = 2.080e-26
Identity = 70/202 (34.65%), Postives = 113/202 (55.94%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT---------------RSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRR-EKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            EP+   E L+     KW +AM++E  +L+ N TWE  +   +PVG+K +  KW++K K + DGS  R KARL+ +GF Q EG D+ E  +PV +MST+R                R  TD C Y    +     I++ +++ D++IA    E+ +  K  +S+   MKDLG+  ++L + + RD+ N T+ +SQ +Y+ +VL
Sbjct:  746 EPECYDEVLQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKVLHNKWVYKIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLWYRKFDSFMHRIGFKRCETDHCCYVKSFDNSY--IILLLYVDDMLIAGSSIEEINNLKKQLSKQFSMKDLGAAKQILGMRIIRDKANDTLKLSQSEYVKKVL 941          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A438ER83_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ER83_VITVI)

HSP 1 Score: 108 bits (271), Expect = 3.880e-24
Identity = 68/189 (35.98%), Postives = 109/189 (57.67%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLR--TRSTTDPCLYFSRDEGGEADILVA-VHIYDLIIARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            EP+   E L+     KW +AM++E  +L+ N TW+  +   +PVG+KA+R KW+++ K + DGS  R KARL+ +GF Q EG D+ E  +PV +MST+R          L+       + D+  A +H  D+      EK +  K  +S+   MKDLG+  ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct:  645 EPECYDEALQDENSSKWELAMKDEMDSLLGNQTWQLTE---LPVGKKALRNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRFVLGMVAAENLHLE-----QLDVKTAFLHGSDI------EKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 818          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: Q7XNW4_ORYSJ (OSJNBb0015G09.2 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XNW4_ORYSJ)

HSP 1 Score: 108 bits (270), Expect = 5.280e-24
Identity = 65/193 (33.68%), Postives = 109/193 (56.48%), Query Frame = 0
Query:    2 PKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLR---TRSTTDPCLYFSRDE-----GGEADILVAVHIYDLIIARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            PKS++E   SP+ D W+  +  E  +++ NGTWE  +    P G K +  KW+FK+KL+ DG++ +CKARL+A+G++Q EGEDFF+T +PVAR++T+R   + + +   L    D       GE D  + +   D       E  +E K  +S+   MKDLG     +++ ++  R    +++ Q  Y+ ++L
Sbjct:  600 PKSISEAYASPDADYWKEDVRSEMDSIITNGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKCKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYM---DQPNGTNLEVINEVKSFLSQNFDMKDLGIAD--VILNIKLIRGENEITLLQSHYVEKIL 784          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: Q01M06_ORYSA (OSIGBa0096F13.4 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q01M06_ORYSA)

HSP 1 Score: 108 bits (269), Expect = 7.280e-24
Identity = 64/210 (30.48%), Postives = 109/210 (51.90%), Query Frame = 0
Query:    2 PKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRREKA----------------------DEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLKIY 189
            P+++ E   SP+ D W+ A+  E  ++M NGTWE  +    P G K +  KW+FK+KL+ DG++ + K RL+A+G++Q EGEDFF+T +PVAR++T+R                   ++LV    Y L++ +   K                       +E K  +S+   MKDLG    +L I+++R   +G +++ Q  Y+ ++L  +
Sbjct:  835 PRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVER---PYGCKPVGCKWVFKKKLRPDGTIEKYKTRLVAKGYTQKEGEDFFDTYSPVARLTTIR-------------------ELLVLAASYGLLVHQMDVKTAFLNGELEEEIYMDQPDSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDESG-ITLVQSHYVDKILSCF 1021          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A2Z6M540_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M540_TRISU)

HSP 1 Score: 107 bits (267), Expect = 1.330e-23
Identity = 78/204 (38.24%), Postives = 108/204 (52.94%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTT-------------DPCLYFSRDEGGEAD----ILVAVHIYDLIIARRREKA-DEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            EP S  E +K PE   WR AM +E  AL +N TWE       P GRKA+  KW++K K +  G + + KARL+A+GF+QVEGED+ ET APVA+M+T+R   T                CL   R    + D    + + V++ DL+IA     A  +FK  +S C  MKDLG L   L +E+ R   +  + I Q  Y  ++L
Sbjct:  685 EPTSYHEAMKHPE---WREAMAKELRALEENETWELTTS---PKGRKAVGCKWVYKIKYQATGEIEKYKARLVAKGFTQVEGEDYGETFAPVAKMTTIRCLLTVAVAERMGTSSNGCKQCLPTWRTRPHKTDGSVFLTILVYVDDLVIAGNDSFACTKFKKYLSDCFHMKDLGVLKYFLGLELARG--SSGMFICQQKYTLDIL 880          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A438EZP1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZP1_VITVI)

HSP 1 Score: 106 bits (264), Expect = 3.360e-23
Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTTDPCLYFSRDEG----GEADILVAVH--IYDLIIARRR--EKADEFKHNI------------------SRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            +P+   E L+     KW +AM++E  +LM N TWE  +   +PVG+KA+  KW+++ K + DGS  R KARL+ +GF Q EG D+ E  +PV  + T       +  LY  + EG    G+ +++  +   +Y L  A R+  +K D F H I                  S+   MKDLG+  ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct:  573 QPECYDEALQDENSSKWELAMKDEMDSLMGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRWSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 780          
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A438C1R6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C1R6_VITVI)

HSP 1 Score: 105 bits (263), Expect = 4.530e-23
Identity = 68/195 (34.87%), Postives = 108/195 (55.38%), Query Frame = 0
Query:    1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT--RSTTDPCLYFSRDE-------GGEADILVAVHIYDLIIARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 186
            EP+   E L+     KW +AM++E  +L+ N TWE  +   +PVG+KA+  KW+++ K + DGS  R KARL+ +GF Q EG D+ E  +PV +MST+R          L+  + +       G   + L  +H     I    EK +  K  +S+   MKDLG+  ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct:  584 EPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIHQKGSDI----EKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 770          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4TTI1_SERID2.490e-2936.60Related to retrotransposon HobS hobase (N-terminal... [more]
Q53MQ5_ORYSJ5.920e-2935.83Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A401GPA3_9APHY1.460e-2837.00Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A7N2RFG7_QUELO2.080e-2634.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A438ER83_VITVI3.880e-2435.98Retrovirus-related Pol polyprotein from transposon... [more]
Q7XNW4_ORYSJ5.280e-2433.68OSJNBb0015G09.2 protein n=1 Tax=Oryza sativa subsp... [more]
Q01M06_ORYSA7.280e-2430.48OSIGBa0096F13.4 protein n=2 Tax=Oryza sativa TaxID... [more]
A0A2Z6M540_TRISU1.330e-2338.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A438EZP1_VITVI3.360e-2333.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A438C1R6_VITVI4.530e-2334.87Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 41..99
e-value: 1.0E-13
score: 51.5
coord: 102..187
e-value: 2.8E-9
score: 37.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..99
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 1..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8858contigH-paniculata_contig8858:3841..4644 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8858.16752.1mRNA_H-paniculata_contig8858.16752.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8858 3841..4644 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8858.16752.1 ID=prot_H-paniculata_contig8858.16752.1|Name=mRNA_H-paniculata_contig8858.16752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIR
TKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT
RSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRREKADEFKHNISRCLR
MKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLKIY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like