mRNA_H-paniculata_contig8858.16752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: G4TTI1_SERID (Related to retrotransposon HobS hobase (N-terminal) (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TTI1_SERID) HSP 1 Score: 117 bits (292), Expect = 2.490e-29 Identity = 71/194 (36.60%), Postives = 114/194 (58.76%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTTDPCLYFSRD----EGGEADILVAVHIYDLIIARRREKADEF-KHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLKIY 567
EP ++ E LK P+ DK+ A EE A ++NGTW+ ++P G+KAI ++W+FK K DGS+++ K R++A+G++Q EG D+ ET P AR LRT + D E I+V VHI DL++A + A + K+ + +++D G S +L +++ RDR + T+S+SQ YI ++L+ Y
Sbjct: 3 EPTTLGEALKRPDGDKYVQAATEEVRAHLENGTWKLV---RLPQGKKAIGSRWVFKIKRDADGSISKYKGRIVAKGYAQREGIDYTETFTPTARFGALRTIIALAALEDWELDVFIYECDNVKIIVPVHIDDLLLASKSPDAIQIVKNELKARFKIRDQGPTSFLLGVKLERDRQSRTISLSQPAYIEQILETY 193
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: Q53MQ5_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53MQ5_ORYSJ) HSP 1 Score: 122 bits (307), Expect = 5.920e-29 Identity = 67/187 (35.83%), Postives = 117/187 (62.57%), Query Frame = 1
Query: 4 PKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTR-STTDPCLYFSRDEGGEADILVAVHIYDLII-ARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 558
PKS++E SP+ D W+ A+ E +++ NGTWE + P G K + KW+FK+KL+ DG++ + KARL+A+G++Q EGEDFF+T +PVAR++T+R + D C+Y+ R GGE +++ +++ D++I E +E K + + MKDLG +++ ++ R +++ Q Y+ ++L
Sbjct: 776 PKSISEAYASPDADYWKEAVHSEMDSIIANGTWEVTER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRFAVNEADKCVYY-RHGGGEG-VILCLYVDDILIFGTNLEVINEVKSFLFQNFDMKDLGVAD--VILNIKLIRGENEITLLQSHYVEKIL 955
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A401GPA3_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GPA3_9APHY) HSP 1 Score: 121 bits (304), Expect = 1.460e-28 Identity = 74/200 (37.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVA-----------RMSTLR-TRSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRREKA-DEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLK 561
EP+S+ E SPE +W A++ E+ L GTWE +D +P R A+ KW+F+RK ++G V + KARL+AQG+SQ+ G DF ET APV ++ L R DPC+Y + GE I + V + DL++ K +E K ++ + DLG +++ IE+ RDR GT+ I Q YI +LK
Sbjct: 838 EPRSLTEAQASPEWSEWEKAVKAEYDQLQGMGTWELQD---LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVQSGCEWNRKLHRELTELGYKRLEADPCVYLRERKEGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREVGTLQILQQHYIESILK 1033
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A7N2RFG7_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2RFG7_QUELO) HSP 1 Score: 115 bits (288), Expect = 2.080e-26 Identity = 70/202 (34.65%), Postives = 113/202 (55.94%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT---------------RSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRR-EKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 558
EP+ E L+ KW +AM++E +L+ N TWE + +PVG+K + KW++K K + DGS R KARL+ +GF Q EG D+ E +PV +MST+R R TD C Y + I++ +++ D++IA E+ + K +S+ MKDLG+ ++L + + RD+ N T+ +SQ +Y+ +VL
Sbjct: 746 EPECYDEVLQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKVLHNKWVYKIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLWYRKFDSFMHRIGFKRCETDHCCYVKSFDNSY--IILLLYVDDMLIAGSSIEEINNLKKQLSKQFSMKDLGAAKQILGMRIIRDKANDTLKLSQSEYVKKVL 941
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A438ER83_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ER83_VITVI) HSP 1 Score: 108 bits (271), Expect = 3.880e-24 Identity = 68/189 (35.98%), Postives = 109/189 (57.67%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLR--TRSTTDPCLYFSRDEGGEADILVA-VHIYDLIIARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 558
EP+ E L+ KW +AM++E +L+ N TW+ + +PVG+KA+R KW+++ K + DGS R KARL+ +GF Q EG D+ E +PV +MST+R L+ + D+ A +H D+ EK + K +S+ MKDLG+ ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct: 645 EPECYDEALQDENSSKWELAMKDEMDSLLGNQTWQLTE---LPVGKKALRNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRFVLGMVAAENLHLE-----QLDVKTAFLHGSDI------EKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 818
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: Q01M06_ORYSA (OSIGBa0096F13.4 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q01M06_ORYSA) HSP 1 Score: 108 bits (269), Expect = 7.280e-24 Identity = 64/210 (30.48%), Postives = 109/210 (51.90%), Query Frame = 1
Query: 4 PKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTTDPCLYFSRDEGGEADILVAVHIYDLIIARRREKA----------------------DEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVLKIY 567
P+++ E SP+ D W+ A+ E ++M NGTWE + P G K + KW+FK+KL+ DG++ + K RL+A+G++Q EGEDFF+T +PVAR++T+R ++LV Y L++ + K +E K +S+ MKDLG +L I+++R +G +++ Q Y+ ++L +
Sbjct: 835 PRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVER---PYGCKPVGCKWVFKKKLRPDGTIEKYKTRLVAKGYTQKEGEDFFDTYSPVARLTTIR-------------------ELLVLAASYGLLVHQMDVKTAFLNGELEEEIYMDQPDSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDESG-ITLVQSHYVDKILSCF 1021
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A438EZP1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EZP1_VITVI) HSP 1 Score: 106 bits (264), Expect = 3.360e-23 Identity = 71/212 (33.49%), Postives = 113/212 (53.30%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRTRSTTDPCLYFSRDEG----GEADILVAVH--IYDLIIARRR--EKADEFKHNI------------------SRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 558
+P+ E L+ KW +AM++E +LM N TWE + +PVG+KA+ KW+++ K + DGS R KARL+ +GF Q EG D+ E +PV + T + LY + EG G+ +++ + +Y L A R+ +K D F H I S+ MKDLG+ ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct: 573 QPECYDEALQDENSSKWELAMKDEMDSLMGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRWSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 780
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A0A438C1R6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C1R6_VITVI) HSP 1 Score: 105 bits (263), Expect = 4.530e-23 Identity = 68/195 (34.87%), Postives = 108/195 (55.38%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT--RSTTDPCLYFSRDE-------GGEADILVAVHIYDLIIARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 558
EP+ E L+ KW +AM++E +L+ N TWE + +PVG+KA+ KW+++ K + DGS R KARL+ +GF Q EG D+ E +PV +MST+R L+ + + G + L +H I EK + K +S+ MKDLG+ ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct: 584 EPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIHQKGSDI----EKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVL 770
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: A5AHY1_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHY1_VITVI) HSP 1 Score: 105 bits (263), Expect = 4.580e-23 Identity = 65/189 (34.39%), Postives = 108/189 (57.14%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT--RSTTDPCLYFSRDEGGEADILVA-VHIYDLIIARRREKADEFKHNISRCLRMKDLGSLSRVLVIEVRRDRPNGTVSISQGDYISEVL 558
EP+ E L+ KW +AM++E +L+ N WE + +PVG+KA+ KW+++ K + DGS R KA+L+ +GF Q EG D+ E +PV +MST+R L+ + D+ +H LI+ E+ + K+ +S+ MKDLG+ ++L + + RD+ NGT+ +SQ +Y+ +VL
Sbjct: 618 EPECYDEALQDENSSKWELAMKDEMDSLLGNQAWELTE---LPVGKKALHNKWVYRIKNEHDGSK-RYKAKLVFKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVATKNLHLE-----QLDVKTTFLHDDMLIVGSGIEEINNLKNQLSKQFAMKDLGAAKQILGMRIIRDKTNGTLKLSQSEYMKKVL 797
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 99.0 bits (245), Expect = 4.960e-23 Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 1 EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRTKWIFKRKLKEDGSVARCKARLIAQGFSQVEGEDFFETAAPVARMSTLRT 300
+P+++ E L SP+ +KW++AMEEE L +N TW D P GRK ++ KW+FKRKL +DG V R KARL+A+G++QVEG D+ ET +PV + ++RT
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRT 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8858.16752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8858.16752.1 >prot_H-paniculata_contig8858.16752.1 ID=prot_H-paniculata_contig8858.16752.1|Name=mRNA_H-paniculata_contig8858.16752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp EPKSVAEELKSPEVDKWRVAMEEEWVALMKNGTWESEDPGKVPVGRKAIRback to top mRNA from alignment at H-paniculata_contig8858:3841..4644- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8858.16752.1 ID=mRNA_H-paniculata_contig8858.16752.1|Name=mRNA_H-paniculata_contig8858.16752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=804bp|location=Sequence derived from alignment at H-paniculata_contig8858:3841..4644- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8858:3841..4644- >mRNA_H-paniculata_contig8858.16752.1 ID=mRNA_H-paniculata_contig8858.16752.1|Name=mRNA_H-paniculata_contig8858.16752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig8858:3841..4644- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |