prot_H-paniculata_contig8615.16576.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8615.16576.1
Unique Nameprot_H-paniculata_contig8615.16576.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length236
Homology
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BLAST of mRNA_H-paniculata_contig8615.16576.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 2.410e-93
Identity = 151/239 (63.18%), Postives = 176/239 (73.64%), Query Frame = 0 
Query:    1 DDDDRLHCLCRLPAGAARFRTLITCDTCHRWFHPACVKMKELRKN------YRDCNDVVFVCPMCEHARGGLSNFACPPSPGFYMNRRMHRPGLSELEPLMEHAARLPVDDVDGQAYLSYMLEQVVGWRDRCQAAVQDVRTYIEQGPAALRPDLLRHPTGILDTLPVFAGVQLPSVGRDLGVEAGLLERLGRLVCEGALIEVVDVHKEDVLLRRAQWILAASLCEPSVIGCLRLGQQPG 233
            +D++ LHCLCRLPA AARFRTL+TCD C  WFHP+CV++KEL K       + +   + FVCPMCEH RGG+SNFACPPSPGFY+ RRMHRPGLSELE LM HA  LPVD VDGQAYL+YM++QVVGWRDRC+ AV++ + YI+ G  A     +R  T         AG+ L S GR LG EA L+ERLGRLVCEG LIEVVDVHKED +LRRA W L ASLC P    CLRLGQ+PG
Sbjct: 1011 EDEEALHCLCRLPADAARFRTLMTCDLCSSWFHPSCVRLKELPKRSLLDGRHHEAPALAFVCPMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELEALMRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDAVKEFQAYIQGGDTA-EATAMREGTPXXXXX-XSAGLVLASAGRRLGFEASLVERLGRLVCEGVLIEVVDVHKEDTMLRRALWTLTASLCLPRAAACLRLGQEPG 1247
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BLAST of mRNA_H-paniculata_contig8615.16576.1 vs. uniprot
Match: A0A6H5JSL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 4.430e-88
Identity = 151/272 (55.51%), Postives = 177/272 (65.07%), Query Frame = 0 
Query:    1 DDDDRLHCLCRLPAGAARFRTLITCDTCHRWFHPACVKMKELRKNYRDCND--------------------------------------VVFVCPMCEHARGGLSNFACPPSPGFYMNRRMHRPGLSELEPLMEHAARLPVDDVDGQAYLSYMLEQVVGWRDRCQAAVQDVRTYIEQGPAALRPDLLRHPTGILDTLPV-FAGVQLPSVGRDLGVEAGLLERLGRLVCEGALIEVVDVHKEDVLLRRAQWILAASLCEPSVIGCLRLGQQPG 233
            +D++ LHCLCRLPA AARFRTL+TCD C  WFHP+CV++K+ +  +  C +                                      + FVCPMCEH RGG+SNFACPPSPGFY+ RRMHRPGLSELE LM +A  LPVD VDGQAYL+YM+ QVVGWRDRC+ AV+D + YI+ G  A    +     G   T P   AG+ L S GR LG EA L+ERLGRLVCEGALIEVVDVHKED +LRRA W L ASLC P    CLRLGQ+PG
Sbjct:  842 EDEEALHCLCRLPADAARFRTLMTCDLCSSWFHPSCVRLKDEKARHHVCLERSQAAPQLTPRPATSLETAVQELPKRSLRGGYHHQAPALAFVCPMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMRNADSLPVDGVDGQAYLNYMVVQVVGWRDRCEDAVKDFQAYIQGGDTAEATAM----KGGTPTPPTPSAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWTLTASLCFPKATSCLRLGQEPG 1109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8615.16576.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN51_ECTSI2.410e-9363.18Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JSL4_9PHAE4.430e-8855.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 7..60
e-value: 8.3E-6
score: 35.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..67
e-value: 2.0E-13
score: 51.6
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 8..59
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 5..62
score: 8.698
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 2..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8615contigH-paniculata_contig8615:6103..9488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8615.16576.1mRNA_H-paniculata_contig8615.16576.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8615 6103..9488 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8615.16576.1 ID=prot_H-paniculata_contig8615.16576.1|Name=mRNA_H-paniculata_contig8615.16576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
DDDDRLHCLCRLPAGAARFRTLITCDTCHRWFHPACVKMKELRKNYRDCN
DVVFVCPMCEHARGGLSNFACPPSPGFYMNRRMHRPGLSELEPLMEHAAR
LPVDDVDGQAYLSYMLEQVVGWRDRCQAAVQDVRTYIEQGPAALRPDLLR
HPTGILDTLPVFAGVQLPSVGRDLGVEAGLLERLGRLVCEGALIEVVDVH
KEDVLLRRAQWILAASLCEPSVIGCLRLGQQPGTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD