mRNA_H-paniculata_contig8615.16576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8615.16576.1
Unique NamemRNA_H-paniculata_contig8615.16576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8615.16576.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 2.410e-93
Identity = 151/239 (63.18%), Postives = 176/239 (73.64%), Query Frame = 1 
Query:    1 DDDDRLHCLCRLPAGAARFRTLITCDTCHRWFHPACVKMKELRKN------YRDCNDVVFVCPMCEHARGGLSNFACPPSPGFYMNRRMHRPGLSELEPLMEHAARLPVDDVDGQAYLSYMLEQVVGWRDRCQAAVQDVRTYIEQGPAALRPDLLRHPTGILDTLPVFAGVQLPSVGRDLGVEAGLLERLGRLVCEGALIEVVDVHKEDVLLRRAQWILAASLCEPSVIGCLRLGQQPG 699
            +D++ LHCLCRLPA AARFRTL+TCD C  WFHP+CV++KEL K       + +   + FVCPMCEH RGG+SNFACPPSPGFY+ RRMHRPGLSELE LM HA  LPVD VDGQAYL+YM++QVVGWRDRC+ AV++ + YI+ G  A     +R  T         AG+ L S GR LG EA L+ERLGRLVCEG LIEVVDVHKED +LRRA W L ASLC P    CLRLGQ+PG
Sbjct: 1011 EDEEALHCLCRLPADAARFRTLMTCDLCSSWFHPSCVRLKELPKRSLLDGRHHEAPALAFVCPMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELEALMRHADSLPVDGVDGQAYLNYMVDQVVGWRDRCEDAVKEFQAYIQGGDTA-EATAMREGTPXXXXX-XSAGLVLASAGRRLGFEASLVERLGRLVCEGVLIEVVDVHKEDTMLRRALWTLTASLCLPRAAACLRLGQEPG 1247
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BLAST of mRNA_H-paniculata_contig8615.16576.1 vs. uniprot
Match: A0A6H5JSL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 4.430e-88
Identity = 151/272 (55.51%), Postives = 177/272 (65.07%), Query Frame = 1 
Query:    1 DDDDRLHCLCRLPAGAARFRTLITCDTCHRWFHPACVKMKELRKNYRDCND--------------------------------------VVFVCPMCEHARGGLSNFACPPSPGFYMNRRMHRPGLSELEPLMEHAARLPVDDVDGQAYLSYMLEQVVGWRDRCQAAVQDVRTYIEQGPAALRPDLLRHPTGILDTLPV-FAGVQLPSVGRDLGVEAGLLERLGRLVCEGALIEVVDVHKEDVLLRRAQWILAASLCEPSVIGCLRLGQQPG 699
            +D++ LHCLCRLPA AARFRTL+TCD C  WFHP+CV++K+ +  +  C +                                      + FVCPMCEH RGG+SNFACPPSPGFY+ RRMHRPGLSELE LM +A  LPVD VDGQAYL+YM+ QVVGWRDRC+ AV+D + YI+ G  A    +     G   T P   AG+ L S GR LG EA L+ERLGRLVCEGALIEVVDVHKED +LRRA W L ASLC P    CLRLGQ+PG
Sbjct:  842 EDEEALHCLCRLPADAARFRTLMTCDLCSSWFHPSCVRLKDEKARHHVCLERSQAAPQLTPRPATSLETAVQELPKRSLRGGYHHQAPALAFVCPMCEHRRGGVSNFACPPSPGFYIGRRMHRPGLSELETLMRNADSLPVDGVDGQAYLNYMVVQVVGWRDRCEDAVKDFQAYIQGGDTAEATAM----KGGTPTPPTPSAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWTLTASLCFPKATSCLRLGQEPG 1109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8615.16576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN51_ECTSI2.410e-9363.18Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JSL4_9PHAE4.430e-8855.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8615contigH-paniculata_contig8615:6103..9488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.6
Seed ortholog evalue3.1e-82
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons6
Model size708
Cds size708
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8615.16576.1prot_H-paniculata_contig8615.16576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8615 6103..9488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931083.0662696-CDS-H-paniculata_contig8615:6102..62221622931083.0662696-CDS-H-paniculata_contig8615:6102..6222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 6103..6222 +
1691481581.8921187-CDS-H-paniculata_contig8615:6102..62221691481581.8921187-CDS-H-paniculata_contig8615:6102..6222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 6103..6222 +
1622931083.0812964-CDS-H-paniculata_contig8615:6640..67461622931083.0812964-CDS-H-paniculata_contig8615:6640..6746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 6641..6746 +
1691481581.9057457-CDS-H-paniculata_contig8615:6640..67461691481581.9057457-CDS-H-paniculata_contig8615:6640..6746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 6641..6746 +
1622931083.095082-CDS-H-paniculata_contig8615:7607..77191622931083.095082-CDS-H-paniculata_contig8615:7607..7719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 7608..7719 +
1691481581.918322-CDS-H-paniculata_contig8615:7607..77191691481581.918322-CDS-H-paniculata_contig8615:7607..7719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 7608..7719 +
1622931083.107172-CDS-H-paniculata_contig8615:8550..86751622931083.107172-CDS-H-paniculata_contig8615:8550..8675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 8551..8675 +
1691481581.927595-CDS-H-paniculata_contig8615:8550..86751691481581.927595-CDS-H-paniculata_contig8615:8550..8675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 8551..8675 +
1622931083.119545-CDS-H-paniculata_contig8615:8918..90611622931083.119545-CDS-H-paniculata_contig8615:8918..9061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 8919..9061 +
1691481581.9366071-CDS-H-paniculata_contig8615:8918..90611691481581.9366071-CDS-H-paniculata_contig8615:8918..9061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 8919..9061 +
1622931083.1554062-CDS-H-paniculata_contig8615:9386..94881622931083.1554062-CDS-H-paniculata_contig8615:9386..9488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 9387..9488 +
1691481581.945603-CDS-H-paniculata_contig8615:9386..94881691481581.945603-CDS-H-paniculata_contig8615:9386..9488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8615 9387..9488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8615.16576.1

>prot_H-paniculata_contig8615.16576.1 ID=prot_H-paniculata_contig8615.16576.1|Name=mRNA_H-paniculata_contig8615.16576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
DDDDRLHCLCRLPAGAARFRTLITCDTCHRWFHPACVKMKELRKNYRDCN
DVVFVCPMCEHARGGLSNFACPPSPGFYMNRRMHRPGLSELEPLMEHAAR
LPVDDVDGQAYLSYMLEQVVGWRDRCQAAVQDVRTYIEQGPAALRPDLLR
HPTGILDTLPVFAGVQLPSVGRDLGVEAGLLERLGRLVCEGALIEVVDVH
KEDVLLRRAQWILAASLCEPSVIGCLRLGQQPGTV*
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mRNA from alignment at H-paniculata_contig8615:6103..9488+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8615.16576.1 ID=mRNA_H-paniculata_contig8615.16576.1|Name=mRNA_H-paniculata_contig8615.16576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3386bp|location=Sequence derived from alignment at H-paniculata_contig8615:6103..9488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATGATGACCGGCTGCACTGCTTGTGTAGACTGCCTGCTGGGGCCGC
AAGATTCCGGACTCTAATAACGTGCGACACGTGCCACCGATGGTTTCATC
CGGCATGCGTGAAGATGAAGGTGACTGGATCGGTTGGGAGAGTGCACCGT
AGGGCAGTTGACGATTTTTATTTTATTTTTGGCGCAGGAGGCATGGGGGG
AATTTACACATCTCTAACTCGCTGCCCTTCTGCTAATCTGGCAAGCAGGA
AACTGACACACGGGGCATGGGTGACGATTGTAAAGAGATTAACGCCTATA
CTGACGGGGGGATCTAGTAAGCATGCATGTATGGCGACAGGGATAGTGGT
CCATGTGTCCCTGGTCTTTCTATCTTGTTGTCTTGTTACGCTAGAGTAAG
CACACAATTAACGTCTTTGCGTCAGGGTTCAGGGTTTCAGGACTGAGAGC
TGGGTGCCCGCCCATCTGAGTTCTATTATATCTAGCCTTTCAAGTGAATG
TGTTGATTTTTTTTTTTTTCCTCGACACGTTACACCAGGAGCTGAGGAAA
AACTACCGCGACTGTAATGATGTGGTGTTCGTGTGCCCAATGTGCGAGCA
CGCCCGGGGAGGATTGTCAAACTTTGCCTGCCCTCCTTCACCAGGTGATT
TTTTTATTTTTTTTTTGTGATCGACTACCTGTATGACGGTATGGGTCTGT
GGATTGCCGCCACCGCGCTATCGACCTTGTCGTAAGAACTCGCTGTTGAA
AAGTAAACCATGGTCAAGATGAGAACGGAAACCTGAACACTTGGTGAGAC
CCTGGCCATGAAGTGCTTGGTATGGGTTGTCATAGCGCCAAGCACTGCAG
CCGTTTGGTCGTTTCGAGAGAGATACACTTGGTTTCATTGCAACTACGAG
CGTAAAACCCCATGTCACATGCTGTCTTGGACTTTTTGAATGGATAAGGC
CAAGGATGTACTACGTACAGTCAGAACCTGTAAGGTTTCTTGAGATACTT
CTGGTGAAATGGCAAGCATATCATGGCGTCACCAGTGGGATATCTAACTG
AGACTCCCCTCTAACTGTTGTTGTGTCATGTGACACATTTGAAACAAACG
CGTAGAAGCTCCTTCCCTCACAACGCTTACGAGGTATGTAAACAGAGGTT
GCATATGCCGGGGTGGAAAAAAAACGCGTAGGAGAGTCATCAGAAACTCT
CTCAAGAGGAACGTCATAACGAGAATACTTGTTGATGAACCCTGAAGGAA
TTTATGGACCGCTTATTGACCGGCTTATTTTCTCATGCTTTGCTCTACTC
TGTATCCAAGATGGTTTTCCCCAAGCGGCAAAAATATGACCCACGCTGTA
CCTAGAGCTGTTCAAGCATGCTTCCGGTGGATTTGTTATTATGTTATTAT
TTATTCACGTGCTAGTTGTCAGCAAATCCATAGTTCGGCAAGTTACGAAG
TCCTGTTCCTGAAGGATCAAAATGAGGATTGTTCCGTGGCTTCTCGATTT
GACAGGTTTCTACATGAACAGACGGATGCATAGACCGGGGCTATCAGAGC
TGGAGCCTCTGATGGAACATGCGGCCAGGCTACCCGTTGACGATGTAGAT
GGACAGGCATATCTCAGGTACCGTGGTTAAATTGCTCCCTTGTTATATGC
CGCAAAGCGATCCTACTTTTTGCCATATTAGACCGATTTTCGCACGCTCA
TGGGGAGCGATGATGTGATGATGCTTTGAGCCTGTAGTTTGCAGGCGCTT
TCAATATACTCTTAGCTATACATTGAAAGCGCCTGAGACTGATGAGTACT
GGACATTGGACTGTATGCGCCCAATTTGTTCGCCTGGTATGGCAAAATTA
CACCTGGGTTAATTGGTACTTGAGGCCTTTTACGGTTTATCGCGCGCGAG
GGAATGTCGCAATCGTTTGCATGTAAAATGAGCGGGCGGCAATGGTGTTA
CTTACTAGTATTTATTTTTTTATTATTACTATTATTACTATTATTACTAT
TATTACTATTATTACTATTATTACTATTATTACTATTATTACTATTATTA
CTATTATTACTATTATTACTATTCATATTATTCAACACTTTGACCCGATC
ACGCAGGCCTGCGGTTAGACAATAGAACTTTCCCGTGGCAACACGAGTAC
ACGTCTAGATAAAAACATATCGCACACCACTCCTCTGGCAGCAGTAAATA
TACTTTCAAAAGTATCTGACGTCTACTGTCGGCTGGATAAAGCACGCCTC
TTGTCCTTGCCGCAGCTCCTTCTCTTAGGATGATGATGATGATTATGCTG
TTTCAACAACCCACTGGTGGTAGATCGCACCAGTATATCAGCTGCTTCCA
CAAAACAAAGCTTACTTGACACATGAGAAACAAACTCCAAACGTCAAATG
GTATCCGTGAGCTCATCTCTCATGTCGCGTGGACCTTCTACACAACAGCT
ACATGCTGGAGCAGGTGGTGGGCTGGAGAGATCGATGCCAGGCTGCCGTG
CAGGATGTCCGAACCTATATCGAACAAGGCCCGGCAGCGCTTCGCCCTGA
CCTTCTCCGACATCCTACGGGGAGTAGCGGCAACGACCGCGCGTGGGCAG
CTTTGCCAACACCGCCGAGCGATATCCGCGACCCAAGCTCGGACGGAAGT
TCGGCGTCACCCCCTTCCCCTGTACTTCCACTCACAACTGAAAACGGTCA
AATGCCACGCGGGTCAGAGAAGGAGGCTTCGCCAGATGGACAAGTAAACA
GAGGTCGTGCGGTTGGGGTGGGTGGCGGCGATGCAGGGGGAGAGAGCGGA
AAATCTGCATCACCAGTATTGGACACGCTGCCGGTTTTTGCTGGGGTGCA
GCTGCCTTCCGTGGGACGAGACCTTGGGGTGGAGGCGGGTTTGTTGGAGA
GGCTGGGACGGCTTGTTTGCGAGGGGGCTTTGATTGAGGTGGTGGACGTG
CACAAAGAGGTGTGCATAGGATGAAGCGTTTGTGGAGATAGAGTGTTTTT
CATCGGCTTTTTTTTTTTTCGCTCAATCTGTGATGGACTTTGTTCTCGTC
GTTTAGTCAGTGTAGGTTGTTTACCCATGTGTGTCGAATTGAAGAACTTT
CGCGGGGCGGTTTGAGGTGACAAGGTGCAGTGCTTGTGCGAGAGAGAAGC
GTGGAGTTTCCTGTCCTGGACGCATGCCTTGGTCGCGTTTTCTGTTTTTT
GTGTGATTTTCTTACTGGTTCTGCGAACCTTCGCTTCTTGTATGTTTCAT
AGAAATTGGAAATGATCTATCTTGTAATATCCAGGATGTTCTTCTCCGAC
GAGCGCAGTGGATTCTGGCGGCTTCTCTTTGCGAGCCTTCGGTCATCGGC
TGCCTCAGGCTAGGACAACAGCCAGGTACTGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8615:6103..9488+

>mRNA_H-paniculata_contig8615.16576.1 ID=mRNA_H-paniculata_contig8615.16576.1|Name=mRNA_H-paniculata_contig8615.16576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig8615:6103..9488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATGATGACCGGCTGCACTGCTTGTGTAGACTGCCTGCTGGGGCCGC
AAGATTCCGGACTCTAATAACGTGCGACACGTGCCACCGATGGTTTCATC
CGGCATGCGTGAAGATGAAGGATGATGATGACCGGCTGCACTGCTTGTGT
AGACTGCCTGCTGGGGCCGCAAGATTCCGGACTCTAATAACGTGCGACAC
GTGCCACCGATGGTTTCATCCGGCATGCGTGAAGATGAAGGAGCTGAGGA
AAAACTACCGCGACTGTAATGATGTGGTGTTCGTGTGCCCAATGTGCGAG
CACGCCCGGGGAGGATTGTCAAACTTTGCCTGCCCTCCTTCACCAGGAGC
TGAGGAAAAACTACCGCGACTGTAATGATGTGGTGTTCGTGTGCCCAATG
TGCGAGCACGCCCGGGGAGGATTGTCAAACTTTGCCTGCCCTCCTTCACC
AGGTTTCTACATGAACAGACGGATGCATAGACCGGGGCTATCAGAGCTGG
AGCCTCTGATGGAACATGCGGCCAGGCTACCCGTTGACGATGTAGATGGA
CAGGCATATCTCAGGTTTCTACATGAACAGACGGATGCATAGACCGGGGC
TATCAGAGCTGGAGCCTCTGATGGAACATGCGGCCAGGCTACCCGTTGAC
GATGTAGATGGACAGGCATATCTCAGCTACATGCTGGAGCAGGTGGTGGG
CTGGAGAGATCGATGCCAGGCTGCCGTGCAGGATGTCCGAACCTATATCG
AACAAGGCCCGGCAGCGCTTCGCCCTGACCTTCTCCGACATCCTACGGGG
ACTACATGCTGGAGCAGGTGGTGGGCTGGAGAGATCGATGCCAGGCTGCC
GTGCAGGATGTCCGAACCTATATCGAACAAGGCCCGGCAGCGCTTCGCCC
TGACCTTCTCCGACATCCTACGGGGATATTGGACACGCTGCCGGTTTTTG
CTGGGGTGCAGCTGCCTTCCGTGGGACGAGACCTTGGGGTGGAGGCGGGT
TTGTTGGAGAGGCTGGGACGGCTTGTTTGCGAGGGGGCTTTGATTGAGGT
GGTGGACGTGCACAAAGAGTATTGGACACGCTGCCGGTTTTTGCTGGGGT
GCAGCTGCCTTCCGTGGGACGAGACCTTGGGGTGGAGGCGGGTTTGTTGG
AGAGGCTGGGACGGCTTGTTTGCGAGGGGGCTTTGATTGAGGTGGTGGAC
GTGCACAAAGAGGATGTTCTTCTCCGACGAGCGCAGTGGATTCTGGCGGC
TTCTCTTTGCGAGCCTTCGGTCATCGGCTGCCTCAGGCTAGGACAACAGC
CAGGTACTGTATAGGATGTTCTTCTCCGACGAGCGCAGTGGATTCTGGCG
GCTTCTCTTTGCGAGCCTTCGGTCATCGGCTGCCTCAGGCTAGGACAACA
GCCAGGTACTGTATAG
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