mRNA_H-paniculata_contig8567.16535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 367 bits (941), Expect = 3.210e-123 Identity = 188/218 (86.24%), Postives = 202/218 (92.66%), Query Frame = 3
Query: 108 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
MKSA M +ACAA A AFVAPSAFNGAA+ A+SSS+MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct: 1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 366 bits (939), Expect = 6.220e-123 Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 3
Query: 108 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
MKSAVM +ACAA A F PSAFNGAALT SA++ S+MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct: 1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 343 bits (880), Expect = 4.300e-114 Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 3
Query: 129 IACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
IACAA A PSAFNGAAL+ A+SSS+MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPP G AQI FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS ETQASKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct: 2 IACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 343 bits (879), Expect = 8.660e-114 Identity = 173/198 (87.37%), Postives = 187/198 (94.44%), Query Frame = 3
Query: 168 SAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
SAFNGAA+ SA+SSS+MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct: 24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 340 bits (871), Expect = 1.180e-112 Identity = 178/218 (81.65%), Postives = 193/218 (88.53%), Query Frame = 3
Query: 108 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
MKSA+M +A AA PSAFNGAALT SA+SSS+MKM+FESEIGAQ PLGF+DPLG+L DADQ+ F+RLRYVEVK GRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP G AQI FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS ETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct: 1 MKSAIMAVASAA--PGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 345 bits (886), Expect = 1.560e-112 Identity = 174/197 (88.32%), Postives = 187/197 (94.92%), Query Frame = 3
Query: 171 AFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
AFNGAA+ A+SSS+MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct: 181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE) HSP 1 Score: 328 bits (842), Expect = 8.410e-109 Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 3
Query: 219 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct: 1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY) HSP 1 Score: 317 bits (813), Expect = 2.110e-104 Identity = 158/181 (87.29%), Postives = 168/181 (92.82%), Query Frame = 3
Query: 219 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
MKM+FE EIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP G AQI FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct: 2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 309 bits (792), Expect = 8.890e-101 Identity = 161/213 (75.59%), Postives = 178/213 (83.57%), Query Frame = 3
Query: 123 MTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
M IACAA A FNGAAL SA+SSS+MKM+FESEIGAQPP+GF+DPLG++ADADQERFDRLRYVE+KHGRIAMLA+ GH+TQQNTRLPGMLS ++FAD PNGVAA SKIPP G QI+ IG EL V+K VEGSFPGD T GGN F S+WD MSEETQASKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct: 1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE) HSP 1 Score: 286 bits (733), Expect = 5.730e-92 Identity = 147/206 (71.36%), Postives = 161/206 (78.16%), Query Frame = 3
Query: 219 MKMAFESEIGAQPPLGFFDPLGMLADA-------------------------DQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
MKM+FESE+GAQPPLGFFDPLG+L D DQERFDRLRYVEVKHGRI+MLA+AGHL QN R PG LS A ++FADMPNGVAA+SKIPP G AQIVAFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct: 1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8567.16535.1 >prot_H-paniculata_contig8567.16535.1 ID=prot_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPback to top mRNA from alignment at H-paniculata_contig8567:1515..4211- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8567.16535.1 ID=mRNA_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2697bp|location=Sequence derived from alignment at H-paniculata_contig8567:1515..4211- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8567:1515..4211- >mRNA_H-paniculata_contig8567.16535.1 ID=mRNA_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig8567:1515..4211- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |