prot_H-paniculata_contig8528.16498.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8528.16498.1
Unique Name	prot_H-paniculata_contig8528.16498.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	269

Homology

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BLAST of mRNA_H-paniculata_contig8528.16498.1 vs. uniprot
Match: D8LFJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.620e-36
Identity = 90/232 (38.79%), Postives = 127/232 (54.74%), Query Frame = 0

Query:   26 AVHEAAEKAIAAAERVLMFEDGWMYPQEEDVSSSTPRTPSEPTLSSNPAWRNPMD-SRGPDEVNRGALVIAGTAGGGGGDVSGEGMIIEYPL--AAEADSEARQEEKRKERQIAEARELRTRRELERVAMSKESAVRLGRDARRQELLAVRASCLPGLVFLFHEVVHGTGLWMFKWSKVESARSWFVRGQTMANVVSNDVHRLAEAMSKRQMCRLLRCIERSSTQILLCDER 254
            AV +AAE+A+AA + VL ++DGWMYPQ+  +++           SS  +W   +D   G D    GA V           V    M++  P+      D     EE+RK +++AEAR          +  ++E+A R    AR++ELL VRA+CLPGLVFL HEV H TGLWM +W    +A  WF RGQ + N +  D +R   A++   M RLL C+ERS+T++L C ER
Sbjct:  181 AVRDAAERAMAAFDGVLTYKDGWMYPQDPAIAADD--------NSSLGSW---VDLGEGSDGAEVGAAVA----------VPNNSMVVSLPVDCGVGGDDVGMSEEERKAKEVAEARXXXXXXXXXAIRAAEETASRAEEAARKEELLGVRAACLPGLVFLAHEVAHSTGLWMLRWRSANAAEEWFTRGQKLVNTIVKDKYRTLLALNPGHMRRLLGCVERSTTKLLECTER 391

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BLAST of mRNA_H-paniculata_contig8528.16498.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 9.790e-36
Identity = 94/232 (40.52%), Postives = 131/232 (56.47%), Query Frame = 0

Query:   26 AVHEAAEKAIAAAERVLMFEDGWMYPQEEDVSSSTPRTPSEPTLSSNPAWRNPMD-SRGPDEVNRGALVIAGTAGGGGGDVSGEGMIIEYPL--AAEADSEARQEEKRKERQIAEARELRTRRELERVAMSKESAVRLGRDARRQELLAVRASCLPGLVFLFHEVVHGTGLWMFKWSKVESARSWFVRGQTMANVVSNDVHRLAEAMSKRQMCRLLRCIERSSTQILLCDER 254
            AV +AAE+A+AA + VL +EDGWMYPQ+  +++           +S  +W +  D S G +EV  GA V           V    M++  P+      D     +E+RK +++AEAR        E +   +E+A R    ARR+ELL VRA+CLPGLVFL HEV H TGLWM +W    +A  WF RGQ +AN +  D +R   A++   M RLL C+ERS+T++L C ER
Sbjct:  926 AVRDAAERAMAAFDGVLTYEDGWMYPQDPAIAADD--------NASLGSWVDLGDGSDGAEEV--GAAVA----------VPNNSMVVSLPVDYGVGGDDVGVSQEERKAKEVAEARRKXXXXXXEAIRAVEETASRAEEAARREELLGVRAACLPGLVFLAHEVAHSTGLWMLRWRSANAAEEWFTRGQKLANTIVKDKYRTLLALNPGHMRRLLGCVERSTTKLLECTER 1137

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8528.16498.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8528.16498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LFJ3_ECTSI	3.620e-36	38.79	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K9Z7_9PHAE	9.790e-36	40.52	Nuclear pore complex protein n=1 Tax=Ectocarpus sp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..144
None	No IPR available	GENE3D	1.20.190.50		coord: 113..256 e-value: 1.9E-8 score: 36.1

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8528	contig	H-paniculata_contig8528:1297..6192 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8528.16498.1	mRNA_H-paniculata_contig8528.16498.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8528 1295..6204 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8528.16498.1 ID=prot_H-paniculata_contig8528.16498.1|Name=mRNA_H-paniculata_contig8528.16498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MEEDDKGWAMVEMNEADSTQDEHAAAVHEAAEKAIAAAERVLMFEDGWMY
PQEEDVSSSTPRTPSEPTLSSNPAWRNPMDSRGPDEVNRGALVIAGTAGG
GGGDVSGEGMIIEYPLAAEADSEARQEEKRKERQIAEARELRTRRELERV
AMSKESAVRLGRDARRQELLAVRASCLPGLVFLFHEVVHGTGLWMFKWSK
VESARSWFVRGQTMANVVSNDVHRLAEAMSKRQMCRLLRCIERSSTQILL
CDERINNVEAFLDGGGGY*