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Homology
BLAST of mRNA_H-paniculata_contig8528.16498.1 vs. uniprot
Match: D8LFJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ3_ECTSI) HSP 1 Score: 142 bits (357), Expect = 4.060e-36 Identity = 90/232 (38.79%), Postives = 127/232 (54.74%), Query Frame = 1
Query: 88 AVHEAAEKAIAAAERVLMFEDGWMYPQEEDVSSSTPRTPSEPTLSSNPAWRNPMD-SRGPDEVNRGALVIAGTAGGGGGDVSGEGMIIEYPL--AAEADSEARQEEKRKERQIAEARELRTRRELERVAMSKESAVRLGRDARRQELLAVRASCLPGLVFLFHEVVHGTGLWMFKWSKVESARSWFVRGQTMANVVSNDVHRLAEAMSKRQMCRLLRCIERSSTQILLCDER 774
AV +AAE+A+AA + VL ++DGWMYPQ+ +++ SS +W +D G D GA V V M++ P+ D EE+RK +++AEAR + ++E+A R AR++ELL VRA+CLPGLVFL HEV H TGLWM +W +A WF RGQ + N + D +R A++ M RLL C+ERS+T++L C ER
Sbjct: 181 AVRDAAERAMAAFDGVLTYKDGWMYPQDPAIAADD--------NSSLGSW---VDLGEGSDGAEVGAAVA----------VPNNSMVVSLPVDCGVGGDDVGMSEEERKAKEVAEARXXXXXXXXXAIRAAEETASRAEEAARKEELLGVRAACLPGLVFLAHEVAHSTGLWMLRWRSANAAEEWFTRGQKLVNTIVKDKYRTLLALNPGHMRRLLGCVERSTTKLLECTER 391
BLAST of mRNA_H-paniculata_contig8528.16498.1 vs. uniprot
Match: A0A6H5K9Z7_9PHAE (Nuclear pore complex protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z7_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.100e-35 Identity = 94/232 (40.52%), Postives = 131/232 (56.47%), Query Frame = 1
Query: 88 AVHEAAEKAIAAAERVLMFEDGWMYPQEEDVSSSTPRTPSEPTLSSNPAWRNPMD-SRGPDEVNRGALVIAGTAGGGGGDVSGEGMIIEYPL--AAEADSEARQEEKRKERQIAEARELRTRRELERVAMSKESAVRLGRDARRQELLAVRASCLPGLVFLFHEVVHGTGLWMFKWSKVESARSWFVRGQTMANVVSNDVHRLAEAMSKRQMCRLLRCIERSSTQILLCDER 774
AV +AAE+A+AA + VL +EDGWMYPQ+ +++ +S +W + D S G +EV GA V V M++ P+ D +E+RK +++AEAR E + +E+A R ARR+ELL VRA+CLPGLVFL HEV H TGLWM +W +A WF RGQ +AN + D +R A++ M RLL C+ERS+T++L C ER
Sbjct: 926 AVRDAAERAMAAFDGVLTYEDGWMYPQDPAIAADD--------NASLGSWVDLGDGSDGAEEV--GAAVA----------VPNNSMVVSLPVDYGVGGDDVGVSQEERKAKEVAEARRKXXXXXXEAIRAVEETASRAEEAARREELLGVRAACLPGLVFLAHEVAHSTGLWMLRWRSANAAEEWFTRGQKLANTIVKDKYRTLLALNPGHMRRLLGCVERSTTKLLECTER 1137
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 821 |
| Cds size | 807 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8528.16498.1 >prot_H-paniculata_contig8528.16498.1 ID=prot_H-paniculata_contig8528.16498.1|Name=mRNA_H-paniculata_contig8528.16498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MEEDDKGWAMVEMNEADSTQDEHAAAVHEAAEKAIAAAERVLMFEDGWMY
PQEEDVSSSTPRTPSEPTLSSNPAWRNPMDSRGPDEVNRGALVIAGTAGG
GGGDVSGEGMIIEYPLAAEADSEARQEEKRKERQIAEARELRTRRELERV
AMSKESAVRLGRDARRQELLAVRASCLPGLVFLFHEVVHGTGLWMFKWSK
VESARSWFVRGQTMANVVSNDVHRLAEAMSKRQMCRLLRCIERSSTQILL
CDERINNVEAFLDGGGGY* back to topmRNA from alignment at H-paniculata_contig8528:1295..6204- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8528.16498.1 ID=mRNA_H-paniculata_contig8528.16498.1|Name=mRNA_H-paniculata_contig8528.16498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4910bp|location=Sequence derived from alignment at H-paniculata_contig8528:1295..6204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGCGGAAGCATGGAGGAGGACGATAAAGGGTGGTGAGTGAGTCGGTG
GGTGGATTAGTCGGCTGCGTTGAGAGTTTCAAGGTTTGTGTTTTCTTGTG
TTTATATGTGTGTTTTGTTGGAAGTGTGCCATGGAGTTAATTGTGTACAA
CGTGCGCGGTACGTTTTCTTACCCCGAATCTTTGTTGTGACAAATATTTT
TTTTATTCGAAGTGTCGAAGTGATGTTGTTTTCCGATGGGAGCACAAGAC
TCTGGTGATGGGATGTAGGTCCAGGGATGTATGTACACGTAGCTGTGGCG
TTGTCAGAACGCCCGAGGAGCAATTTGTTTTCCAGCCCGATTTTCTCTAG
AAAGTACTTGGATGCTAGTGACACTAAAGGTTGTGTCGTTGAAGCGATCT
CGTCGAGATCTATCGAACTACGATGCTAGTGACACCTTTTGTTGTATCGT
TAAAAGATCTCGTCGAGGTGAATTTGTCGATCAACGTGCGCTTTCTACCG
CACACATATTTCTTTTTTCGAGAAAGTTGAGCCTGAACAAAAATTCGCCC
ACTGGCGGGTTCTGACGGTGCCCTACATCAGTGTGGATGGAACACACACA
AGTGATTTCGTGCGGAGAATTCTCCGCACGAAGGAGTGACACGTGAGGGG
TCGGAGAAAGGCCAGACAGCCGAGCTGTTCTGATTATGGAGCTAAAAACG
ACGATGTATTGTTCGTTTCATTCGGAACACATTGATTTGCTTTTGTTCTG
TCGCGCGATTAATAGAAAATAAGCACATAGTGTGGAGTATTCATGACTGT
AAGGGGGATGACGTCCTCTTTCCTACCGTGAAATATATCCGGAGGTATCG
CACCAGGTATGAACATTTTCCAAACGTGATTGACTGTCTCGAGAACGGAG
ACATTGAGCGGTCCAAATAACCTGTCGATCGGCATATGTATCGCCGCAAG
ATATTTCCAACGGCCCACTGTTCGTTGTCAGTAGCTAGCGCGGTATTTCT
CGAGATGGTCAATCGGTTCTGGAAAATATCCTGCACCCCGGTCCAACACG
TCCGAGTTTGTTTTGCGGTATTTTGTATTTTATCAATCAGGGTTTTAAGT
GTGGTGCGGTAGTTTTCGTACTGTAAATCGCCTTTTTGTCACACCCCAAA
AAATCGGTCGTGAGCGGTAAGTAGTAAGCGCTGTTTGCAGTGATGGGACA
TGCTGCTCCTTGCTCTCTTTGCGGCAGGGCTATGGTGGAGATGAACGAGG
CGGACAGCACCCAAGATGAGCATGCGGCGGCGGTGCACGAGGCGGCGGAG
AAGGCGATAGCGGCGGCAGAACGGGTGCTCATGTTTGAGGTCAGTCTGTG
TCTCATGACAGATGGGTAAGGGGTACGAGCCGGTCCCCCCAAGAAATATC
CCAATTCTTCAGACAGCCTTTCCTTCACAATATTTATAATAAAATAAAAT
AAAATGAAAACTACATGAATATATATATATATATTAACTAACGGACAAAG
GAAGCGCCCGAGGGGTGGATTCTGGTCATTTTCCATCTTTGTTAGGTCCT
TTATCTCGGCACCAGAGGAAAAAGTTTTTTCGTCACGTTCGGGTTGTTTT
TTTCATGCGAACATTAGCGTTCTTTAGTTGTTTTTTTTCCAATTCGTAAA
AACCGTCGAACATGAGCAAAAATACTACGGTCGCGGAAGGGATATACTGC
TAGTTTTTGCTTTTTCCCAGTGGTTCTCAAGAGTCATATATCTTTTTAAA
GGCCAATGATCGTGTCGACATTACAAACGATCTCACGATCGCGCATTTTT
CGTTGATGGTTGAAGGGTTAGCGCAATTAGGGGTTTTGTTATGTGTTTCA
TTTTACTCCGTTTTCCTCCATTTTGCAATTCATCTCGCCACTCGAAGAAA
ATAAATTCCGCCATTTCGGGTTATTCATCTTTTTATTGCAAGCATTCATG
TGTTTCCCTCTTTTCTAAATTCGTAAAAACCATGGAACACTATCTTCCAA
ACACCGCTTCGGAACGGTTTCATGGAATATTTGTCAAACCTAAACAGGTG
CTTCAAACTCGAGATGTGGGGTAATTATGCAGATGGAAACAGCAGCATGC
TGTTAAAAATAATCTAGAGCAACCTTTTGCATGCTTTCGTTTCCCATTTT
GCCAAATCCGTCATGTGCGGATTGGTCTATACGAAATGTGCGTACCAACT
GCTGCAATAAGACCTGCAGCCAAGCTGGTGCGCGACCCCTGGGCCTACAA
CGCGGCAAATTTCATTTTTACCGCTGATTGGTGGGTGCACTGCAGTTACA
GCTTCATCTGCTGCGCATAGCTTATTGCGATATATGGTTGTGCTACCGTT
GCTCTGCTGTGTGAACGCGTGCGCAGGTTTGCGTCGGGGCACAATTATAA
AAAATGGAACATGACAATTTTGTACAAATCAAAACGAAACTGCTGCAAGT
TTTATGTTTTTGTCTTTATTACGATTGCTTTTTTTTCATTCAATTTTACA
AACATATGAATCGTACACATGGTGTGACCCCACCATCATTACCATTACAT
TCCCATTTTTTCGAACGTCCCAACTGCGTACGCAGTTATTTATTGCACAG
TCCGAATATTGAAGTCTTATTCCCCAGCAGAATGCACGCATAATCCCCCC
CACTTCCTCCAGCACATCCCGTACATCCTCTTTTGATTTTCTCTTTTTTT
CAGTCTCACGTATCTCTCATGTATTCCTTACCCCCCCCCCCCCCTCCCTG
TCCTCACACAGGACGGTTGGATGTATCCGCAAGAAGAAGACGTCTCCTCC
TCCACACCACGGACTCCTTCGGAACCAACGCTGTCCTCCAATCCGGCTTG
GCGGAATCCGATGGACTCTCGAGGCCCGGATGAGGTCAATCGGGGAGCCC
TGGTGATCGCGGGTACGGCGGGGGGGGGTGGAGGCGACGTCTCGGGAGAG
GTAAGTGAATCCATTGGTGCTTGTGTCTTGCCGTTTGAGAAATGGTTGGG
AATTACGCATAGAGTGTTAGAGAGAAGGTCAATGCGACATAGATAGATAG
ATATATACAGCTCGAGAATACAGCTCCAGACAGATGACAGATAGAACCCC
TGTTGTGTATATTAATACTAGTATATGGATAGCACGCTGAGATTGATGGT
GATTTAGTGATTCGGAACGTTTTTTTTCCAATTATGTATTCGAGTGAATT
GTTGAAAACGCGGCGAGCCGTTGGGCGCGGGTCGTGGTTTTGGATAATGA
CTAAACGTGTAGAGTAGGATTGCACGCGCGCGCGATGTCGCCATGGTTGT
TGCTCTATGAACACCAGATATCATGACAACGAGAAGAAACAGTGGCATCA
CAAATACACATGATACATACCGTGGCGTCACTTTGCACGTCCCCCTGTCT
TGTGAGGTGGGGTTGAATCTACCTATATAAGAGTGAGATTTCGTTCAGCA
GTCTGTATCTGGAGTCGTTTGTGCTGGCATTCATTCAACAAATGTTTTCA
ATCGACCAAATAGAGAGAGAGATGGGTGTACAGCCAGCCCTTTCCCCAAG
GAGTAAAATATGATCCTACACCAAAAGAGGGGTGGTACCCTATACCGTAG
TTTACGGCGTACATACACCACACCCGAGTTGATTTATGATTATTTCGACC
TCGATTTTATTCGACGTTGTTCATGACTATACATTTCGAATGGCGCTGAA
AAAATCTCGTTGAGATCTGTTTTTAGATGGGCGAGGTTTGTCATAAGATA
GACGAGGCCTGTCGCTAGGTAGACGAGGGCTGTCCTGTAGCAACATTTTT
TTCTCCCGCGAATAAGTTGAGAGAAAAAGTCATTGATGTAAATTACGTAC
ATATAATTGGATCATGACTCGACCTGCCTCTGTCCTGTAGTAACATATAA
ATTCATCTCTCAAGATTTAACTTGCTACCTTACTCGTCGTCCTCCTCACC
CTCTTCATCGTATTATCCAGGGGATGATAATCGAGTATCCCCTGGCTGCG
GAGGCGGACAGCGAAGCGAGGCAAGAGGAAAAGAGGAAGGAGCGTCAAAT
AGCGGAAGCTAGAGAACTTCGGACTCGGCGAGAGTTGGAGCGCGTGGCGA
TGTCCAAGGAGTCCGCTGTCCGCCTGGGCAGGGACGCGAGGAGGCAGGAG
CTGCTGGCCGTGAGAGCGTCATGCTTGCCGGGTCTGGTGTTCTTGTTCCA
TGAGGTGGGTGGTGGGTGCTTGGGGGATGGATGGATCGAGATTGATGTTT
CTCGCCAAGATAATCATCTACAGGTTAAAGATTCACATGTTGAACCGATC
AGACAGATTCTTCACCCCTTGTTTGCATACCATTTTGCTTGCACGAATAG
TAAGATGGTAGGACCCGTACGTGTTTGCCCGCGGCTGATTCGTATACCTG
TGGATCGTGAGAACGTCTTTGTCCGCTACTATTTTGTACGATGTGTACGA
TCCGTGCGTGTTTGACCGAGACTGCCCCTCTTGCCCCTCATGAATCTTAT
TTTGCTGATAAATGTACAAAATGTAGACAGAAGGTTGAGGTCAGCTGCAT
AACCTCAACATGGGTACGATGGGGTTGTTGTACGAGCGTCATTATTCTAC
CAACTGTGCATCCTCTTCACCTTCGCCTCCAAACGCCCCCAACTTATCAC
CACCTGCAGGTGGTGCACGGCACCGGTTTATGGATGTTCAAGTGGAGCAA
GGTCGAATCCGCTCGCTCGTGGTTCGTGCGCGGGCAGACCATGGCCAATG
TGGTATCAAACGATGTGCACCGTTTGGCGGAGGCCATGAGCAAGAGGCAG
ATGTGCCGGCTCTTGCGATGCATAGAGCGCAGTTCTACTCAAATTCTTCT
GTGTGACGAGCGGATCAACAATGTAGAGGCGTTTTTAGACGGGGGTGGGG
GGTACTGAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig8528:1295..6204- >mRNA_H-paniculata_contig8528.16498.1 ID=mRNA_H-paniculata_contig8528.16498.1|Name=mRNA_H-paniculata_contig8528.16498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig8528:1295..6204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGACGATAAAGGGTGATGGAGGAGGACGATAAAGGGTGGGCT
ATGGTGGAGATGAACGAGGCGGACAGCACCCAAGATGAGCATGCGGCGGC
GGTGCACGAGGCGGCGGAGAAGGCGATAGCGGCGGCAGAACGGGTGCTCA
TGTTTGAGGGCTATGGTGGAGATGAACGAGGCGGACAGCACCCAAGATGA
GCATGCGGCGGCGGTGCACGAGGCGGCGGAGAAGGCGATAGCGGCGGCAG
AACGGGTGCTCATGTTTGAGGACGGTTGGATGTATCCGCAAGAAGAAGAC
GTCTCCTCCTCCACACCACGGACTCCTTCGGAACCAACGCTGTCCTCCAA
TCCGGCTTGGCGGAATCCGATGGACTCTCGAGGCCCGGATGAGGTCAATC
GGGGAGCCCTGGTGATCGCGGGTACGGCGGGGGGGGGTGGAGGCGACGTC
TCGGGAGAGGACGGTTGGATGTATCCGCAAGAAGAAGACGTCTCCTCCTC
CACACCACGGACTCCTTCGGAACCAACGCTGTCCTCCAATCCGGCTTGGC
GGAATCCGATGGACTCTCGAGGCCCGGATGAGGTCAATCGGGGAGCCCTG
GTGATCGCGGGTACGGCGGGGGGGGGTGGAGGCGACGTCTCGGGAGAGGG
GATGATAATCGAGTATCCCCTGGCTGCGGAGGCGGACAGCGAAGCGAGGC
AAGAGGAAAAGAGGAAGGAGCGTCAAATAGCGGAAGCTAGAGAACTTCGG
ACTCGGCGAGAGTTGGAGCGCGTGGCGATGTCCAAGGAGTCCGCTGTCCG
CCTGGGCAGGGACGCGAGGAGGCAGGAGCTGCTGGCCGTGAGAGCGTCAT
GCTTGCCGGGTCTGGTGTTCTTGTTCCATGAGGGGATGATAATCGAGTAT
CCCCTGGCTGCGGAGGCGGACAGCGAAGCGAGGCAAGAGGAAAAGAGGAA
GGAGCGTCAAATAGCGGAAGCTAGAGAACTTCGGACTCGGCGAGAGTTGG
AGCGCGTGGCGATGTCCAAGGAGTCCGCTGTCCGCCTGGGCAGGGACGCG
AGGAGGCAGGAGCTGCTGGCCGTGAGAGCGTCATGCTTGCCGGGTCTGGT
GTTCTTGTTCCATGAGGTGGTGCACGGCACCGGTTTATGGATGTTCAAGT
GGAGCAAGGTCGAATCCGCTCGCTCGTGGTTCGTGCGCGGGCAGACCATG
GCCAATGTGGTATCAAACGATGTGCACCGTTTGGCGGAGGCCATGAGCAA
GAGGCAGATGTGCCGGCTCTTGCGATGCATAGAGCGCAGTTCTACTCAAA
TTCTTCTGTGTGACGAGCGGATCAACAATGTAGAGGCGTTTTTAGACGGG
GGTGGGGGGTACTGAGTGGTGCACGGCACCGGTTTATGGATGTTCAAGTG
GAGCAAGGTCGAATCCGCTCGCTCGTGGTTCGTGCGCGGGCAGACCATGG
CCAATGTGGTATCAAACGATGTGCACCGTTTGGCGGAGGCCATGAGCAAG
AGGCAGATGTGCCGGCTCTTGCGATGCATAGAGCGCAGTTCTACTCAAAT
TCTTCTGTGTGACGAGCGGATCAACAATGTAGAGGCGTTTTTAGACGGGG
GTGGGGGGTACTGA back to top
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