prot_H-paniculata_contig84.16406.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig84.16406.1
Unique Nameprot_H-paniculata_contig84.16406.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length219
Homology
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BLAST of mRNA_H-paniculata_contig84.16406.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.740e-44
Identity = 103/176 (58.52%), Postives = 126/176 (71.59%), Query Frame = 0 
Query:   45 MARIEAEIELQQLQREENGSAMTTRGQVRMVXXXXXXXXXXXXXXXXXXXCVFSPVLGFMLVLPFVSAGVMGGLIYAQLRDKMRALRRRTAVSLEK--KAIGTFTSQDKEEFLRQLQGRSDVSLTTPTTDMDIS-MPSGSFLRRVAMTAAEVVMRSALDVTIASVSSILS-GSGGG 216
            M RI+AEIEL+QLQREE+GSAMT R QVR V            XXXXXXXC+FSP LGFM+VLPFVS GV+GGL+Y+QLRDK+R+L RR     ++  +  G   S+DK+EFLRQLQGRSD S T      D S +PSGSFLRRVA+ A  +++RSALDVT A+  ++L  G GGG
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAACAMLGLGRGGG 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig84.16406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGG6_ECTSI4.740e-4458.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..99
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 100..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 124..218
NoneNo IPR availableTMHMMTMhelixcoord: 101..123
NoneNo IPR availableTMHMMTMhelixcoord: 75..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig84contigH-paniculata_contig84:13159..19433 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig84.16406.1mRNA_H-paniculata_contig84.16406.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig84 12300..19465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig84.16406.1 ID=prot_H-paniculata_contig84.16406.1|Name=mRNA_H-paniculata_contig84.16406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MQVVSLEEEELTAQRDAAVLIFKELQKKLQLQAEEYERRTEAHEMARIEA
EIELQQLQREENGSAMTTRGQVRMVTQGWIIGIVLGWAAGFLLGCVFSPV
LGFMLVLPFVSAGVMGGLIYAQLRDKMRALRRRTAVSLEKKAIGTFTSQD
KEEFLRQLQGRSDVSLTTPTTDMDISMPSGSFLRRVAMTAAEVVMRSALD
VTIASVSSILSGSGGGAG*
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