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Homology
BLAST of mRNA_H-paniculata_contig84.16406.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI) HSP 1 Score: 155 bits (392), Expect = 3.650e-41 Identity = 103/176 (58.52%), Postives = 126/176 (71.59%), Query Frame = 3
Query: 165 MARIEAEIELQQLQREENGSAMTTRGQVRMVXXXXXXXXXXXXXXXXXXXCVFSPVLGFMLVLPFVSAGVMGGLIYAQLRDKMRALRRRTAVSLEK--KAIGTFTSQDKEEFLRQLQGRSDVSLTTPTTDMDIS-MPSGSFLRRVAMTAAEVVMRSALDVTIASVSSILS-GSGGG 680
M RI+AEIEL+QLQREE+GSAMT R QVR V XXXXXXXC+FSP LGFM+VLPFVS GV+GGL+Y+QLRDK+R+L RR ++ + G S+DK+EFLRQLQGRSD S T D S +PSGSFLRRVA+ A +++RSALDVT A+ ++L G GGG
Sbjct: 1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAACAMLGLGRGGG 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-16_003970.1 |
| Exons | 6 |
| Model size | 1548 |
| Cds size | 657 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig84.16406.1 >prot_H-paniculata_contig84.16406.1 ID=prot_H-paniculata_contig84.16406.1|Name=mRNA_H-paniculata_contig84.16406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MQVVSLEEEELTAQRDAAVLIFKELQKKLQLQAEEYERRTEAHEMARIEA EIELQQLQREENGSAMTTRGQVRMVTQGWIIGIVLGWAAGFLLGCVFSPV LGFMLVLPFVSAGVMGGLIYAQLRDKMRALRRRTAVSLEKKAIGTFTSQD KEEFLRQLQGRSDVSLTTPTTDMDISMPSGSFLRRVAMTAAEVVMRSALD VTIASVSSILSGSGGGAG* back to topmRNA from alignment at H-paniculata_contig84:12300..19465- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig84.16406.1 ID=mRNA_H-paniculata_contig84.16406.1|Name=mRNA_H-paniculata_contig84.16406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7166bp|location=Sequence derived from alignment at H-paniculata_contig84:12300..19465- (Halopteris paniculata Hal_grac_a_UBK monoicous) GGCACAGACGGCGAGTTTGGGTTAGCTCAGCGATGCAGGTGGTATCGCTT
GAAGAGGAGGAGCTCACCGCTCAGCGTGATGCCGCAGTATTAATTTTTAA
AGAACTTCAAAAGAAGGTTAGAATTGCTATTAATGTACAGAACAATCCAG
TAAAATAGAGTCAGCTATATTAAGCAGCTATAGCGTTCAGCGTGGGGTGA
GAGTACCGACCTATTAGTGTGTAAGCCCCACACGACAAACCTTGGTTCAC
ATGACCTGTAAGATTGGCAAATAGAAACATGACCTGCAGAGTATGTCATG
TTTCTAATTGCCAATCTTTCTCGCAGTACCTCTAAATTAGATATGTGTAT
GGTCTACGGACATCTACGGATAGATGCTCAGAGAGTCCTGAGATGGCAGC
GCTCGTTTCCGTGTGTGTGCTTCAAGAGTCCTTTAACAGGATTGGGGATC
AAGTTTCTTCTCTGGGTTGAAGTTCCGTTGAGTTTGAATGGGATACTTGA
AAAAAAATTCTAGCGAAAGGTATTTTCCGGGGAGAGTTCGTGTCTATCTC
ACTGCTGTTTACTTTGCACAATGAACTTGGAAACCTTTTCATACCTCGAT
TCGCACAGAAAGTGCCTTTTGCTATTAATAGCACCATTTTCTACTGTTCC
ATGCAAATTCAACGGAACTTCAATCCCAACAAGAAACTTGATCCCCAGTC
CTGAGTATCGCCTGTTCTTCGGCGAAGATGGAAAGACCAAACATGCAGAG
TGAATGTAGCAAAGGGGAATAAGATGAAAATGCTAGGGAAAAGTGAGCCC
ACAGGCAGTACGCGAATATTCCGCTGGTTTGTCTTGACAAAAACCCCATT
CACCGAGTAGGCACAGAAAAGACATGGTGTACTGAGACAATACTGATGTT
GTGGTCGGATCACCATAGGTCTGTGAGGATGTTTTGTGCAGCGCAAGAAA
TGTCGAGTCATGTATCTACATAACAAAAACTTGGTGTTCGGTACCCTCTC
CAACACTGACTTCAAGAGACTCTAGTTTTGGATATCGATTTTTGATCGGC
GCCAGAGCACGCGCCCAGCAAGCACTGAGAAACAAAGGTTGGTAGGACAA
ACTAAAGATATCAGGGTAAGGTCGCCATCGGTTTGGCAGTGTTTCGTTTA
GCGTAGCGCTGTTCGAATTAGTGGGCAAAAACGTGACTAATAAACTTACG
GGCAAAATTCTCTTTCAAGTCCCTCTCAGCAGTTTTATCACACATGTTTG
ATATCGTCATGGTCCGGCAGGAAAATTGAAATCCTGCTTTGCTCGGTTGT
AAGCTTCCGGAAGAAATTTTTCAGGGCGATAAATTCCTCTTCTTGAAATT
CACCGCAATTAATTTTATACTGTTCGTTGTTCGTTTGGATAATTCTGGGG
CGATTTTGCGCGCGCCGGGATGTATGTTGCTTTCTCTGCATGTCACCGTC
TTGCCTGCCAATGTGTAGGACATACCCAGCGTCCTGCCGAGCAGACTTTC
CAGTTCCTGTTTCTTGCGTTGCTGATAAGTTACTCGGGGGGGATACGCAT
CGGGTTTAGGGGCGAGGGATATCCCTAATTTCTTGTTTTTCTCCGTCACC
TCACTTGAGATATCAAACTACGGGTTGTGCTTGTTGACGGGCATACTTAC
ATAAGAATCGAGTCAATTATTCAGCGCCCGCCAACGCCGTGTTGCGGCCC
GCCCTTGCTCTGCTCCTGATCTGTCCTCTTCTCGTGTCCCTGGTTCCGCT
CGATCTGTCCCACCCTCCTGATTTCTGGCGTATCCGTATTGTTTCTATTT
TGCAATGACAGCTTCAACTGCAAGCCGAGGAGTACGAGAGGCGAACAGAA
GCTCACGAAATGGCACGAATCGAGGTACGGTGTTCTACCATGCCAAAATT
TACAAGTATAGTAGTCAGCACTTGCTGCAAAGTCACATGCCAAGGTACTG
TCCTGTATTTTTTCTTGGTCTTCACGTATACAACGACGAACGCTGGCATT
CTGCTTAATGGTATGAGTCTGTACACATCAAAACAATACACAAAACACCA
CACAATCTGAACGTCTAGTTTGTGCCTATTTTTAAGTAAACTATTTCGGC
ACTGGCTCCCTCTACACTTACGATTTGGGTCCAAAGTGTCCAGGCTCGTG
AGCGTGGTCTAGCGTTTTCTCGTTCTCCGTCTTCCACAATCAGTCGCAGT
GGAGGGATGTCGCATGTGCACCTGTTGTCCAGCTTAACGTATCTTTGTAT
CCGATTGTATCCAGTCGCATCGAACCTACAATTAGTGTTGCATCTGTTTC
TATAGTTTTTTATCTAAATCATAAATTTGGCAAATGTGCGCCAGGCACTG
AAACTTGTCCCCTTAGGATTTGGGTTCAGACCAATGACGATTTGCGACTT
TTGAGGATCCTTTTGGTGTTTGATATTTACGCTCAAATGACTGCCATTAC
CGACCATCCGTGCCAGCAGTGGCAATGATGATCCTTGAACATACGGAAAA
TAAAACCAAGCGATTGTGCCTCTCAGCAGCAGGGACATGTCGTGACAGAA
TATGCAACGAGCGAGGTTTCGATGAGCACAGGACGCATTATGTTTCGCGT
GCGGATAAGCGATAAATTTCAAACGTAATGAACATGTTCCGAAATAAGAA
AATAAGGACTGATCCTGAAAAGTTAAATTCCGTAGTTTGGTGCATATTTC
ACAGGTCATCTTAAAGCCTTCCACTCATGACTCTTATCTATATTGCAGCC
AATTTGGAGAGCTACTTGTCTGTCGCAATTTTAGTTATCTATTTTTTTTT
CTGCGTATGACTGTCCATGTATACGCATGTTAGGTGGTTCTCCCATCTGG
ATCCTTGATTCAGCCTGAGTATGTGCGTGATACTGACTTTACTGGCGTAG
CGTTTGCGAGTGTTCTAGAAATATTCTTGTATTTTTATTGTTCTGATTCT
TGTTTCTTGTCATGAATCCGGTTCGTATCTACGTAGAATCTTCTTCGGAT
CCGTTTCTTGTTACGGATTGGAGGAGAGACGTAGGGGAGTCACTGTGTGC
CCCCCTCTGTCACTCTCCGTCACTGTTCCACGCCTACACCATAATAAAAG
CTCCACAACTCTTCTCTTTATGCTCGCGCTACAAGCCCAAACCCGTCGAA
GCCTGGAGATAACGGACAATGACCGCAAACAATGGCGGACCTGAACTACT
CACCCACACGACAAATATGATGGTCACATCACCAGATACGTAAAAATTTT
AATCTGTGAGCAGTCTCTCTTGTCTGTGTAAAAATCATGTACCATGTAGA
GTTATACCACCAACGTGTTTGTTTGTCATGTTCGTTTTTCGTGCTGTCGA
TCGGTTGTCCTCGCATTGTTCGTGGTTCTTCGCCCCTCCAAAAATGAAGG
CTGAGATCGAATTACAACAGTTGCAGCGCGAAGAGAACGGGAGCGCAATG
ACCACTAGGGGGCAGGTTCGAATGGTGACACAGGGGTGGATCATTGGCAT
CGTGTTGGGTTGGGCTGCCGGGTTTCTTTTGGGCTGCGTCTTCTCTCCGG
TGCTGGGCTTCATGCTCGTGAGACGCGCGTACTCTACAATAGTTTACTGG
ACGAGGAATGTGACCGAGGCGGAAAGCCAAAGTAGAAATAAAAAGCTGCT
TGTAATTTTGTCGTGGCGAGAGCTATCCCGAGCAACAAGCACCGTCAATA
CGAAAAAAATGACAGTACGCGGATAACGCGTGTTCCGAAACGGCCGTCAC
TTTACCGTAATGCGGTTTAGTTGGGGATATAGCTGCATTCAAATATACCT
GTATATGCTGGTTTACATACACACGCGTGCGTTGGGGTTACAGGCAGCAG
AAATGCCTTGGTGGTGCGCCCGGCGTAAATTGCCGATTGAACACACTCGC
AGCTACTGGGATATGTAAATATTAGTGTGATGTAGTACTTTGGCTGCCGA
ACCCCCCCATAGCCTTGGTTGATACTCGTTGTATGCCTACTTGTCATCCT
TGCTGTCTTGGGACTGGCGCTGGCACGTAGCGTGAACCTTCACTTTCTCG
GGTTAATACGTCCTTGTAACCTCGTATTGGTCTGTATTTATTCTGCTTCG
AGCATGTCGCACAGCTGTTGTCAGGTCAGAGTTCCCCGCCTCCCCTGTAT
AGCCGAACATCTCTGCGATTGAATGCATTTCTAGTATGCAGCATCAATAT
TCCGACTCGTAGTACACTGGAGGCACAATACCTTTTCAACTCTTCATTGC
ACCCCCCCCTCCCTTTCCCATCCGCGCTCGCAAACAAGACACACTCACGA
AAGCGTTTTGTTCGTTGCTATACTGCCCTCTTTCAAGGTTCTACCGTTCG
TGTCCGCCGGCGTAATGGGGGGTCTGATATATGCGCAACTTCGGGACAAA
ATGCGCGCCCTACGACGACGTACTGCGGTGAGCCTTGAGAAGAAGGCGAT
AGGCACCTTCAGTATCAAATTGAAAGCGATGAGAACACGATGCTCCCACC
ACGGCCTGGCTCCGGTCAAGGTTGTGTTCGGTCTCTGGTATTTTAAGTCC
AGATTTGGGAATGCACTGCGGAGCACACACACGCAGTTTTGCTTTGTACG
GAGAGTTCAATATGGTAATCAACTAACTAATTTGGTGACGATAACAGTTA
TGTCTACTTCTTTCGCACTCTTTACCATTCCCTCATATATGTATATATAT
ATTTTTTTTGTTTTTCCAAATTTTATGAGATTGATTCGAGTTGGAAATGC
AGACTTACTTACTGGGGGAAAACTATAAACGCCTTAACGTTTCACCCCAC
CAAAGTGGGGTATGTAACCTTCACTTTGTCAAGACAAACATACAGTGCAT
TTCGGTACTTGGGTGTTCCAAACCCATTCCCAGTCTGTACGTGTGGTCCT
GCTCAAAGTGTCATTGCCCAGCCTAGACCACATGGTGTCTAACTTCTCTA
ATCGCACCCCCCCCCAAAACATTTGGTCAATTTGTGGATAAGTTGCTACA
TATTAAAAAGCTGTACCCTTCAAATGACCGAAATACCTCTAGTTGGGATA
GATAGCTATTGACGTATCTTTTATTCGTACGTTCTTCTCTCATTTTGGCA
AACCATTGTTTTTTGTCAAACCATTGTTTTTTGTCAAACCATTGTTTTTT
GTCAAACCATTGTTTTTTGTCAAACCATTGTTTTTTGTCAAACCATTGTT
TTTTGTCAAACCGTATTCCCATATTGTAGATGTTGCTGAAGTCGTTCCTG
GCAAGAGGCGTACGTGTTGTCGCTATTATGGTGTTGTTGATGTGTAGAGC
TCCTGCTTCTCCCCGTCAAGTGCACTACTCGTTCTCTTGTAACCCCCCAG
ATTGTTTCATTTTATGGGTAAGTAATCCAACAGCTTAGAGATGCTGAGCA
TACCTCCGTTTTTTTTTACGGGTATCCTCGTGTTTCCTATAGTTCAGACA
GTACTTTATGCATATCTGCTTGTACTTTCGGCTCGCTCTTGACTCTACGG
ACTTTTTTCAAACCGTTTTCTTATATTATAATGTCGATGTCATCCTTCTA
ATGAGGCTGTCCTTGGCAATTAAAGCGTGTGGTGATGTCGCTATGCCCCC
CCCCCCTGTGCGCGCTTCCAACTTGTTGGGTCAGGTGCCAGAAGCTTCAC
AGGACAAGGAGGAATTTCTTCGGCAACTACAGGGGCGCTCGGACGTGTCC
TTGACCACTCCAACCACAGATATGGATATTTCGATGCCTTCTGGATCTTT
GTGAGTTAGCTTGTCAGATTTTACGTATCTCTGTGTGTGCAGTTTCTTTC
AAGCCGTTGCAAGTCTGACGCGCCTCAACATACCTGGCAACCTATGAACT
CGAGACAAAAAAAGCGACCTAACGTTTCAAGAGAGGGATCGATCGGCTAT
GTACTACAATACGACTGGAGTATGGACAAAACAAGAAAATTACCTTCAAT
ATACCTCTACCGTATGATCACAAGGTCTTTGCTTGCTCACACTTGTCGCT
GTGTCACTTTGTCCTCGTCCCCGAATCAACTCTGTTGTTCTTGACCTTTT
CCGCCGAAACGACATGATACTGTCACAGCCCCAGCGTAACCTATCGTTTG
CCACGAGCCCCTCGTTTGCGGCATTCCAAATTTGACGACGGCATCTTGTT
GGTGCTTGCCATCGATCGTTTTTTCCACGTTTTGTTATTTTCCAGCTTGC
GACGAGTCGCCATGACCGCTGCTGAGGTTGTTATGAGGTCTGCGTTGGAC
GTTACAATAGCATCGGTTTCTTCGATACTCAGCGGAAGCGGCGGCGGTGC
CGGCTGAGAAACCCAAGCATGAAGCTATATCGTGGATAGAGTGGGGCTGG
ATTTGGGAGAATAGTGTACTGCATTCCGACCATTGTAGGTACAGCTATAA
GGAAGAGTGTACCCGCTGTTGAGTGCCTGAAACATTGTCGCGTAGATCGA
GTATTGTGAAATATGTTGCTGTGTTTTGCGGCCTGGTGGTGTACCGAAAG
GCGGGAGGCTAAGAGGCAAGGAGGCGGATGAACATGGAAGTCACTGCGTA
AACAGGACATATCCTGAGCTGTTCATGACACCTGAAACCAGGATAAAGAC
CCTACGAACTTGTTACCTGCACCCTAGTTTTACTGCATCTTCTTCGATTA
GGGTAGCTGAAGGTAGGCGCGCGACAAAATGTTGGAAAGGGTACTTTGTA
TAGTGCTGCAAGGAACAGCTTCTGGCAGCTTGAACTGTGTTCCGTTGTTT
TTTACCGTAATTATAAATGTGTCCTGCGGTCTCGCATCGTTTTCTTGTAC
TTTTGGCGCCCCTCGCCTGTAACGGCGCGTCTCAATCTCGTGTTGTATTT
TTCCGTCTTGAGGTTATTTATATTTTTCAAGTTTCTGCAAGCACCGGAGT
CGAGGGTGTTTCAGGAGGATGATCACATTCGGGGGCACTGTTGTTGACGA
GAGTGCGTGGTATTGTGCGTGGCGCGAATATCGGCTCTCACTGACTCAAG
TTCCTTGTAGTAAACGGCTTCCTGGCTGACGCAGTACAGTTGTGGGGTGG
ATGAGTCCTTGCAGTCAGTGGTGCAAGTGCCGGCGTTTTTCCCCTCTCGA
TTTTTCGAATGCGGAAAAGGATGGATATATTGAAATATGAAAGACAAAAG
TTGACAAATTGAAAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig84:12300..19465- >mRNA_H-paniculata_contig84.16406.1 ID=mRNA_H-paniculata_contig84.16406.1|Name=mRNA_H-paniculata_contig84.16406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig84:12300..19465- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCAGGTGGTATCGCTTGAAGAGGAGGAGCTCACCGCTCAGCGTGATGC CGCAGTATTAATTTTTAAAGAACTTCAAAAGAAGATGCAGGTGGTATCGC TTGAAGAGGAGGAGCTCACCGCTCAGCGTGATGCCGCAGTATTAATTTTT AAAGAACTTCAAAAGAAGCTTCAACTGCAAGCCGAGGAGTACGAGAGGCG AACAGAAGCTCACGAAATGGCACGAATCGAGCTTCAACTGCAAGCCGAGG AGTACGAGAGGCGAACAGAAGCTCACGAAATGGCACGAATCGAGGCTGAG ATCGAATTACAACAGTTGCAGCGCGAAGAGAACGGGAGCGCAATGACCAC TAGGGGGCAGGTTCGAATGGTGACACAGGGGTGGATCATTGGCATCGTGT TGGGTTGGGCTGCCGGGTTTCTTTTGGGCTGCGTCTTCTCTCCGGTGCTG GGCTTCATGCTCGCTGAGATCGAATTACAACAGTTGCAGCGCGAAGAGAA CGGGAGCGCAATGACCACTAGGGGGCAGGTTCGAATGGTGACACAGGGGT GGATCATTGGCATCGTGTTGGGTTGGGCTGCCGGGTTTCTTTTGGGCTGC GTCTTCTCTCCGGTGCTGGGCTTCATGCTCGTTCTACCGTTCGTGTCCGC CGGCGTAATGGGGGGTCTGATATATGCGCAACTTCGGGACAAAATGCGCG CCCTACGACGACGTACTGCGGTGAGCCTTGAGAAGAAGGCGATAGGCACC TTCAGTTCTACCGTTCGTGTCCGCCGGCGTAATGGGGGGTCTGATATATG CGCAACTTCGGGACAAAATGCGCGCCCTACGACGACGTACTGCGGTGAGC CTTGAGAAGAAGGCGATAGGCACCTTCACTTCACAGGACAAGGAGGAATT TCTTCGGCAACTACAGGGGCGCTCGGACGTGTCCTTGACCACTCCAACCA CAGATATGGATATTTCGATGCCTTCTGGATCTTTCTTCACAGGACAAGGA GGAATTTCTTCGGCAACTACAGGGGCGCTCGGACGTGTCCTTGACCACTC CAACCACAGATATGGATATTTCGATGCCTTCTGGATCTTTCTTGCGACGA GTCGCCATGACCGCTGCTGAGGTTGTTATGAGGTCTGCGTTGGACGTTAC AATAGCATCGGTTTCTTCGATACTCAGCGGAAGCGGCGGCGGTGCCGGCT GACTTGCGACGAGTCGCCATGACCGCTGCTGAGGTTGTTATGAGGTCTGC GTTGGACGTTACAATAGCATCGGTTTCTTCGATACTCAGCGGAAGCGGCG GCGGTGCCGGCTGA back to top
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