prot_H-paniculata_contig8337.16353.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8337.16353.1
Unique Nameprot_H-paniculata_contig8337.16353.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length87
Homology
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A177USG4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177USG4_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 2.290e-7
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    1 MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVE-ELFLKLPPQF 58
            +EG D+ ET APVAR+S L M+ +LA ++D +L GM V  AYLN  ++ ++++K PP +
Sbjct:  383 VEGVDYDETFAPVARLSALRMMVTLAVQFDLKLHGMDVKTAYLNGELDVDIYMKQPPGY 441          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q2RB82_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2RB82_ORYSJ)

HSP 1 Score: 56.6 bits (135), Expect = 2.350e-7
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    1 MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEEL-FLKLPPQFS-PFLPRH 65
            +EG DF ET APVARI ++ ++ + A  +DF L  M V +A+LN P+ EL +++ PP F  P LP H
Sbjct:  964 VEGLDFGETFAPVARIESIRILLAYAAHHDFRLFHMDVKSAFLNGPISELVYVEQPPGFEDPKLPNH 1030          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q2QRV1_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QRV1_ORYSJ)

HSP 1 Score: 56.6 bits (135), Expect = 2.350e-7
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    1 MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEEL-FLKLPPQFS-PFLPRH 65
            +EG DF ET APVAR+ ++ ++ + A  +DF L  M V +A+LN P+ EL +++ PP F  P LP H
Sbjct: 1196 IEGLDFDETFAPVARLESIRILLAYAAHHDFRLLQMDVKSAFLNRPISELVYVEQPPGFEDPMLPNH 1262          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A699ITX5_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699ITX5_TANCI)

HSP 1 Score: 55.8 bits (133), Expect = 4.210e-7
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0
Query:    2 EGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHN--VC 68
            +G D+F+T APVARI++++++F+LA  Y+F +  M V  A+LN  + EE+++K P  F   LP H   VC
Sbjct:  250 QGVDYFDTYAPVARITSIMVLFALASIYNFPIHQMDVKTAFLNGDLDEEVYMKQPEGF--VLPGHENKVC 317          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A177TC39_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177TC39_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 4.310e-7
Identity = 26/59 (44.07%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    1 MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVE-ELFLKLPPQF 58
            +EG D+ ET APVAR+S L M+ +LA ++D +L GM V  AY+N  ++ ++++K PP +
Sbjct:  618 VEGVDYDETFAPVARLSALRMMVTLAVQFDLKLHGMDVKTAYINGELDVDIYMKQPPGY 676          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q6ATD3_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATD3_ORYSJ)

HSP 1 Score: 55.8 bits (133), Expect = 4.350e-7
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    1 MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEEL-FLKLPPQFS-PFLPRH 65
            +EG DF ET APVAR+ ++ ++ + A  +DF L  M V +A+LN P+ EL +++ PP F  P LP H
Sbjct: 1190 VEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFKDPKLPNH 1256          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q7XLY1_ORYSJ (OSJNBa0042I15.9 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLY1_ORYSJ)

HSP 1 Score: 55.8 bits (133), Expect = 4.370e-7
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    1 MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEEL-FLKLPPQFS-PFLPRH 65
            +EG DF ET APVAR+ ++ ++ + A  +DF L  M V +A+LN P+ EL +++ PP F  P LP H
Sbjct: 1068 VEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNH 1134          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI)

HSP 1 Score: 55.5 bits (132), Expect = 5.870e-7
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 0
Query:    2 EGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHNVC 68
            EG DFF+T APVARIST+ ++ +LA  +D  +  M V  A+LN  + EE+++K P  F       NVC
Sbjct:  521 EGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFVMLGHESNVC 588          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: UPI001CA468C4 (hypothetical protein n=1 Tax=Xylella fastidiosa TaxID=2371 RepID=UPI001CA468C4)

HSP 1 Score: 52.4 bits (124), Expect = 1.440e-6
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 0
Query:    2 EGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHNVC 68
            EG D+F+T APVARIST+ ++ ++A  +   +  M V  A+LN  + EE+++K P  F      H VC
Sbjct:   50 EGIDYFDTYAPVARISTIRVLLAIASIHKLHIHQMDVKTAFLNGELDEEIYMKQPEGFVVQGQEHKVC 117          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A4Y9ZI14_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZI14_9AGAM)

HSP 1 Score: 53.9 bits (128), Expect = 2.070e-6
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 0
Query:    3 GEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQFSPFLPRHNVC 68
            G D+ +T APVA++S++ +V +LA  +D++L  M V  AYLN  +EE +F+K PP F+       VC
Sbjct:  146 GIDYTDTFAPVAKLSSICLVGTLAARFDYKLHQMDVKNAYLNGDLEEEIFMKQPPGFAAPGQESKVC 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177USG4_9BASI2.290e-745.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q2RB82_ORYSJ2.350e-746.27Retrotransposon protein, putative, unclassified n=... [more]
Q2QRV1_ORYSJ2.350e-744.78Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A699ITX5_TANCI4.210e-742.86Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A177TC39_9BASI4.310e-744.07Integrase catalytic domain-containing protein n=1 ... [more]
Q6ATD3_ORYSJ4.350e-744.78Putative polyprotein n=1 Tax=Oryza sativa subsp. j... [more]
Q7XLY1_ORYSJ4.370e-744.78OSJNBa0042I15.9 protein n=1 Tax=Oryza sativa subsp... [more]
A0A699IEH1_TANCI5.870e-744.12Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
UPI001CA468C41.440e-639.71hypothetical protein n=1 Tax=Xylella fastidiosa Ta... [more]
A0A4Y9ZI14_9AGAM2.070e-641.79Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..59
e-value: 2.5E-8
score: 33.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8337contigH-paniculata_contig8337:1409..1669 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8337.16353.1mRNA_H-paniculata_contig8337.16353.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8337 1179..1744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8337.16353.1 ID=prot_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEEL
FLKLPPQFSPFLPRHNVCPSPAQKPVRLQAERPKLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2