mRNA_H-paniculata_contig8337.16353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8337.16353.1
Unique NamemRNA_H-paniculata_contig8337.16353.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: UPI001CA468C4 (hypothetical protein n=1 Tax=Xylella fastidiosa TaxID=2371 RepID=UPI001CA468C4)

HSP 1 Score: 79.0 bits (193), Expect = 1.630e-15
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHNVC 279
            FK+K+K DG++ ++KARLV +G +Q EG D+F+T APVARIST+ ++ ++A  +   +  M V  A+LN  + EE+++K P  F      H VC
Sbjct:   24 FKKKMKVDGTIDKFKARLVAKGFTQKEGIDYFDTYAPVARISTIRVLLAIASIHKLHIHQMDVKTAFLNGELDEEIYMKQPEGFVVQGQEHKVC 117          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR)

HSP 1 Score: 80.9 bits (198), Expect = 5.250e-15
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQF 249
            FKRK+K DGS+ +YKARLV QG  Q EG DFF+T APVARIST+ ++ +LA  +   +  M V  A+LN  + EE+++K P  F
Sbjct:   28 FKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQPEGF 111          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI)

HSP 1 Score: 82.0 bits (201), Expect = 8.410e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHNVC 279
             +RK+K DGS+ +YKARLV QG  Q EG DFF+T APVARIST+ ++ +LA  +D  +  M V  A+LN  + EE+++K P  F       NVC
Sbjct:  495 LERKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFVMLGHESNVC 588          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-14
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQF-SPFLPRH 270
            FK KL EDGS+VR KARLV QG +Q+EG DF ET APVAR+  + ++ + A    F+L  M V +A+LN  +EE +++K PP F +P  P H
Sbjct: 1337 FKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNH 1428          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q7XPI7_ORYSJ (OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XPI7_ORYSJ)

HSP 1 Score: 81.3 bits (199), Expect = 1.700e-14
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQF-SPFLPRH 270
            FK KL EDGS+VR KARLV QG +Q+EG DF ET APVAR+  + ++ + A    F+L  M V +A+LN  +EE +++K PP F +P  P H
Sbjct: 1312 FKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNH 1403          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A6L2NKU3_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NKU3_TANCI)

HSP 1 Score: 80.9 bits (198), Expect = 1.910e-14
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHN--VC 279
             KRK+K DGS+ +YKARLV QG  Q  G DFF+T APVARIST+ ++ +LA  +D  +  M V  A+LNA + EE+++K P  F   +P H   VC
Sbjct:  288 LKRKMKVDGSIDKYKARLVIQGFRQKNGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNADLDEEIYMKQPEGF--VMPGHESKVC 381          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q53ML4_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53ML4_ORYSJ)

HSP 1 Score: 80.9 bits (198), Expect = 2.250e-14
Identity = 59/150 (39.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQF-SPFLPRHNVCPSPA----QKPVRLQAERPKLE**S*RFSC*DGLQRSTTDPCLTFLVTKGERQTF 432
            FK K  EDG +VR KARLV QG +Q+EG DF ET APVARI  + ++F+ A    F+L  M V +A+LN  + EE+++K PP F +P  P H    S A    ++  R   +R K       F    G      D  L F++  G+ Q F
Sbjct: 1038 FKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLFAFAASKGFKLYQMGVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLK------NFLLAKGFTMGKVDRTL-FVLKHGDNQLF 1180          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A699I4S8_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I4S8_TANCI)

HSP 1 Score: 80.5 bits (197), Expect = 2.460e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEELFLKLPPQFSPFLPRHNVC 279
            FKRK+K DG+V ++KARLV QG  Q EG D+F+T APV RI+T++++ +LA  ++  +  M+V   +LN  +EE+++K P  F      H VC
Sbjct:  114 FKRKMKVDGTVDKFKARLVIQGFRQKEGIDYFDTYAPVTRITTIILLLALAAIHNLVIYQMNVKTEFLNGALEEVYMKQPKGFVMPGNEHMVC 206          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A5N6LAP9_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LAP9_9ASTR)

HSP 1 Score: 80.5 bits (197), Expect = 2.730e-14
Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLP--RHNVC 279
            FKRK+K DGS+ ++KARLV QG  Q EG DFF+T  PVARIST+ ++ +LA  ++  +  M V  A+LN  + EE+++K P  F   LP   H VC
Sbjct:  406 FKRKMKVDGSIDKFKARLVVQGFRQKEGIDFFDTYVPVARISTIRLLVALASIHNLIIHQMDVKTAFLNGELDEEVYMKQPEGF--ILPGNEHKVC 499          
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A6D2L198_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L198_9BRAS)

HSP 1 Score: 80.5 bits (197), Expect = 2.740e-14
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQFSPFLPRHNVC 279
            FK KLK DG++ +YKARLV QG  Q+EG DFF+T +PV RI+++ ++ ++A   D E+  M V  A+LN  +EE +++K P  F      H VC
Sbjct:  535 FKTKLKTDGAIDKYKARLVVQGFRQVEGLDFFDTYSPVTRITSIRILIAIASLRDLEIHQMDVKTAFLNGDLEEEIYMKQPEGFVTPGQEHKVC 628          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CA468C41.630e-1542.55hypothetical protein n=1 Tax=Xylella fastidiosa Ta... [more]
A0A5N6Q4G6_9ASTR5.250e-1551.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699IEH1_TANCI8.410e-1547.87Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
Q5KQE8_ORYSJ1.680e-1450.00Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
Q7XPI7_ORYSJ1.700e-1450.00OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp... [more]
A0A6L2NKU3_TANCI1.910e-1448.96Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetu... [more]
Q53ML4_ORYSJ2.250e-1439.33Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A699I4S8_TANCI2.460e-1444.09Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetu... [more]
A0A5N6LAP9_9ASTR2.730e-1447.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2L198_9BRAS2.740e-1444.68Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8337contigH-paniculata_contig8337:1179..1744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size566
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8337.16353.1prot_H-paniculata_contig8337.16353.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8337 1409..1669 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.5555692-UTR-H-paniculata_contig8337:1178..14081622931047.5555692-UTR-H-paniculata_contig8337:1178..1408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8337 1179..1408 -
1691481565.6939518-UTR-H-paniculata_contig8337:1178..14081691481565.6939518-UTR-H-paniculata_contig8337:1178..1408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8337 1179..1408 -
1622931047.585255-UTR-H-paniculata_contig8337:1669..17441622931047.585255-UTR-H-paniculata_contig8337:1669..1744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8337 1670..1744 -
1691481565.714193-UTR-H-paniculata_contig8337:1669..17441691481565.714193-UTR-H-paniculata_contig8337:1669..1744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8337 1670..1744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.5711708-CDS-H-paniculata_contig8337:1408..16691622931047.5711708-CDS-H-paniculata_contig8337:1408..1669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8337 1409..1669 -
1691481565.7042825-CDS-H-paniculata_contig8337:1408..16691691481565.7042825-CDS-H-paniculata_contig8337:1408..1669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8337 1409..1669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8337.16353.1

>prot_H-paniculata_contig8337.16353.1 ID=prot_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEEL
FLKLPPQFSPFLPRHNVCPSPAQKPVRLQAERPKLE*
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mRNA from alignment at H-paniculata_contig8337:1179..1744-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8337.16353.1 ID=mRNA_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at H-paniculata_contig8337:1179..1744- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAGCGGAAATTAAAGGAGGATGGCAGTGTGGTACGCTACAAAGCGCG ACTAGTGCCTCAAGGAGTTTCACAGATGGAGGGTGAAGATTTCTTTGAAA CCAGTGCCCCCGTAGCTCGCATATCGACATTGCTTATGGTTTTCAGCCTG GCCGACGAATATGATTTCGAATTAGAAGGCATGCACGTAGATGCGGCGTA TTTGAACGCCCCGGTAGAAGAACTGTTTCTTAAGCTACCCCCCCAGTTTT CCCCTTTCCTCCCGAGGCATAACGTTTGTCCGTCGCCTGCGCAAAAGCCT GTACGGCTTCAAGCAGAGCGACCGAAACTGGAATAATGATCTTGACGATT TTCTTGTTGAGATGGACTCCAACGTTCCACAACCGACCCATGCTTGACAT TCCTCGTGACGAAGGGGGAGAGACAGACCTTCTGATAGCCGTGTATGTTG ATGACCTGGTCATCGCTGGACGTCGTGAGAAAGTAGACGAGTTCGAGCAC GACATAAGTCGGCGTTTTAGGATGAAAGACTTGGGTACTCTCTCACGTGT GTTGGGAATAGAAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig8337:1179..1744-

>mRNA_H-paniculata_contig8337.16353.1 ID=mRNA_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig8337:1179..1744- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATATC
GACATTGCTTATGGTTTTCAGCCTGGCCGACGAATATGATTTCGAATTAG
AAGGCATGCACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAACTG
TTTCTTAAGCTACCCCCCCAGTTTTCCCCTTTCCTCCCGAGGCATAACGT
TTGTCCGTCGCCTGCGCAAAAGCCTGTACGGCTTCAAGCAGAGCGACCGA
AACTGGAATAAATGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCCGTA
GCTCGCATATCGACATTGCTTATGGTTTTCAGCCTGGCCGACGAATATGA
TTTCGAATTAGAAGGCATGCACGTAGATGCGGCGTATTTGAACGCCCCGG
TAGAAGAACTGTTTCTTAAGCTACCCCCCCAGTTTTCCCCTTTCCTCCCG
AGGCATAACGTTTGTCCGTCGCCTGCGCAAAAGCCTGTACGGCTTCAAGC
AGAGCGACCGAAACTGGAATAA
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