mRNA_H-paniculata_contig8337.16353.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: UPI001CA468C4 (hypothetical protein n=1 Tax=Xylella fastidiosa TaxID=2371 RepID=UPI001CA468C4) HSP 1 Score: 79.0 bits (193), Expect = 1.630e-15 Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHNVC 279
FK+K+K DG++ ++KARLV +G +Q EG D+F+T APVARIST+ ++ ++A + + M V A+LN + EE+++K P F H VC
Sbjct: 24 FKKKMKVDGTIDKFKARLVAKGFTQKEGIDYFDTYAPVARISTIRVLLAIASIHKLHIHQMDVKTAFLNGELDEEIYMKQPEGFVVQGQEHKVC 117
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR) HSP 1 Score: 80.9 bits (198), Expect = 5.250e-15 Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQF 249
FKRK+K DGS+ +YKARLV QG Q EG DFF+T APVARIST+ ++ +LA + + M V A+LN + EE+++K P F
Sbjct: 28 FKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQPEGF 111
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A699IEH1_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IEH1_TANCI) HSP 1 Score: 82.0 bits (201), Expect = 8.410e-15 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHNVC 279
+RK+K DGS+ +YKARLV QG Q EG DFF+T APVARIST+ ++ +LA +D + M V A+LN + EE+++K P F NVC
Sbjct: 495 LERKMKVDGSIDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQPEGFVMLGHESNVC 588
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ) HSP 1 Score: 81.3 bits (199), Expect = 1.680e-14 Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQF-SPFLPRH 270
FK KL EDGS+VR KARLV QG +Q+EG DF ET APVAR+ + ++ + A F+L M V +A+LN +EE +++K PP F +P P H
Sbjct: 1337 FKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNH 1428
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q7XPI7_ORYSJ (OSJNBb0004A17.2 protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XPI7_ORYSJ) HSP 1 Score: 81.3 bits (199), Expect = 1.700e-14 Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQF-SPFLPRH 270
FK KL EDGS+VR KARLV QG +Q+EG DF ET APVAR+ + ++ + A F+L M V +A+LN +EE +++K PP F +P P H
Sbjct: 1312 FKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNH 1403
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A6L2NKU3_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NKU3_TANCI) HSP 1 Score: 80.9 bits (198), Expect = 1.910e-14 Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLPRHN--VC 279
KRK+K DGS+ +YKARLV QG Q G DFF+T APVARIST+ ++ +LA +D + M V A+LNA + EE+++K P F +P H VC
Sbjct: 288 LKRKMKVDGSIDKYKARLVIQGFRQKNGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNADLDEEIYMKQPEGF--VMPGHESKVC 381
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: Q53ML4_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53ML4_ORYSJ) HSP 1 Score: 80.9 bits (198), Expect = 2.250e-14 Identity = 59/150 (39.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQF-SPFLPRHNVCPSPA----QKPVRLQAERPKLE**S*RFSC*DGLQRSTTDPCLTFLVTKGERQTF 432
FK K EDG +VR KARLV QG +Q+EG DF ET APVARI + ++F+ A F+L M V +A+LN + EE+++K PP F +P P H S A ++ R +R K F G D L F++ G+ Q F
Sbjct: 1038 FKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLFAFAASKGFKLYQMGVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLK------NFLLAKGFTMGKVDRTL-FVLKHGDNQLF 1180
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A699I4S8_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I4S8_TANCI) HSP 1 Score: 80.5 bits (197), Expect = 2.460e-14 Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEELFLKLPPQFSPFLPRHNVC 279
FKRK+K DG+V ++KARLV QG Q EG D+F+T APV RI+T++++ +LA ++ + M+V +LN +EE+++K P F H VC
Sbjct: 114 FKRKMKVDGTVDKFKARLVIQGFRQKEGIDYFDTYAPVTRITTIILLLALAAIHNLVIYQMNVKTEFLNGALEEVYMKQPKGFVMPGNEHMVC 206
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A5N6LAP9_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LAP9_9ASTR) HSP 1 Score: 80.5 bits (197), Expect = 2.730e-14 Identity = 46/96 (47.92%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPV-EELFLKLPPQFSPFLP--RHNVC 279
FKRK+K DGS+ ++KARLV QG Q EG DFF+T PVARIST+ ++ +LA ++ + M V A+LN + EE+++K P F LP H VC
Sbjct: 406 FKRKMKVDGSIDKFKARLVVQGFRQKEGIDFFDTYVPVARISTIRLLVALASIHNLIIHQMDVKTAFLNGELDEEVYMKQPEGF--ILPGNEHKVC 499
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Match: A0A6D2L198_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L198_9BRAS) HSP 1 Score: 80.5 bits (197), Expect = 2.740e-14 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 1 FKRKLKEDGSVVRYKARLVPQGVSQMEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEE-LFLKLPPQFSPFLPRHNVC 279
FK KLK DG++ +YKARLV QG Q+EG DFF+T +PV RI+++ ++ ++A D E+ M V A+LN +EE +++K P F H VC
Sbjct: 535 FKTKLKTDGAIDKYKARLVVQGFRQVEGLDFFDTYSPVTRITSIRILIAIASLRDLEIHQMDVKTAFLNGDLEEEIYMKQPEGFVTPGQEHKVC 628 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8337.16353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8337.16353.1 >prot_H-paniculata_contig8337.16353.1 ID=prot_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp MEGEDFFETSAPVARISTLLMVFSLADEYDFELEGMHVDAAYLNAPVEELback to top mRNA from alignment at H-paniculata_contig8337:1179..1744- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8337.16353.1 ID=mRNA_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at H-paniculata_contig8337:1179..1744- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8337:1179..1744- >mRNA_H-paniculata_contig8337.16353.1 ID=mRNA_H-paniculata_contig8337.16353.1|Name=mRNA_H-paniculata_contig8337.16353.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig8337:1179..1744- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |