prot_H-paniculata_contig8333.16349.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8333.16349.1
Unique Nameprot_H-paniculata_contig8333.16349.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length59
Homology
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.250e-9
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0
Query:    2 APGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY 58
            A GYE  DE   +P+VM+L KS+Y L+QSP N+     K + E GF +  SDPCVYVY
Sbjct:  122 AKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY 179          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.370e-9
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0
Query:    2 APGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY 58
            A GYE  DE   +P+VM+L KS+Y L+QSP N+     K + E GF +  SDPCVYVY
Sbjct: 1018 AKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY 1075          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 6.210e-9
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0
Query:    2 APGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY 58
            A GYE  DE   +P+VM+L KS+Y L+QSP N+   + K + + GF +  SDPCV VY
Sbjct:   21 AKGYEIMDEVTGLPLVMKLKKSLYGLKQSPRNFGNAVAKGIKDIGFTALLSDPCVCVY 78          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.170e-9
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 0
Query:    2 APGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY 58
            A GYE  DE   +P+VM+L KS+Y L+QSP N+     K   E GF +  SDPCVYVY
Sbjct:   34 AKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGNKEIGFTALLSDPCVYVY 91          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.240e-6
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    2 APGYEEFDENE-VPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVY 56
            APG+E+ + +   P+V +L KS+Y LRQSPS W   I K L   GF    SDPCVY
Sbjct:  772 APGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVY 827          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6A2ZKV9_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZKV9_HIBSY)

HSP 1 Score: 53.1 bits (126), Expect = 1.240e-6
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 0
Query:    3 PGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYV 57
            PG+E+FD +  P+V +L K++Y LRQ+P NW   +   L E GF   ++D  ++V
Sbjct:  711 PGFEQFDSSGSPLVCKLNKALYGLRQTPQNWNEKLKNSLLELGFTISRADASLFV 765          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6A2Z4J8_HIBSY (Putative zinc ion binding protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z4J8_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 2.330e-6
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    3 PGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVY 56
            PG+E+ +E   P+V +L K +Y LRQ+P NW   + + L + GFK F++D  ++
Sbjct:  859 PGFEQTNELGEPLVCKLKKELYGLRQAPRNWHVKLKETLVQMGFKVFRADSSLF 912          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6A3AKF3_HIBSY (Dynamin-related protein 5A n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AKF3_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 2.340e-6
Identity = 21/55 (38.18%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    3 PGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYV 57
            PG+E+ DE+  P+V +L+K++Y LRQ+P NW   + + L + GF   ++D  ++V
Sbjct: 1730 PGFEQTDESGKPLVCKLLKALYGLRQTPRNWHIKLKESLLQLGFTVSRADSSLFV 1784          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A5B6WFP4_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6WFP4_9ROSI)

HSP 1 Score: 51.6 bits (122), Expect = 4.280e-6
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 0
Query:    3 PGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYV 57
            PGY ++D    P+V RL K++Y LRQ+P  W+  +   L   GF   KSD  ++V
Sbjct:   97 PGYVQYDSTGKPLVCRLKKALYGLRQAPRTWFEKLKSFLVSIGFIVSKSDVSLFV 151          
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY)

HSP 1 Score: 51.2 bits (121), Expect = 5.960e-6
Identity = 18/55 (32.73%), Postives = 36/55 (65.45%), Query Frame = 0
Query:    3 PGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYV 57
            PG+E+  ++  P+V +L +++Y LRQ+P NW   +   L + GF + ++DP +++
Sbjct: 1032 PGFEQVADDGTPLVCKLQRALYGLRQAPRNWHAKLRANLVQIGFVASRADPSLFI 1086          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVC8_9PHAE1.250e-951.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE2.370e-951.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4S3_9PHAE6.210e-948.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFG1_9PHAE8.170e-951.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAG6_9PHAE1.240e-650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2ZKV9_HIBSY1.240e-640.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2Z4J8_HIBSY2.330e-638.89Putative zinc ion binding protein n=1 Tax=Hibiscus... [more]
A0A6A3AKF3_HIBSY2.340e-638.18Dynamin-related protein 5A n=1 Tax=Hibiscus syriac... [more]
A0A5B6WFP4_9ROSI4.280e-640.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3A122_HIBSY5.960e-632.73Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8333contigH-paniculata_contig8333:376..552 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8333.16349.1mRNA_H-paniculata_contig8333.16349.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8333 217..900 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8333.16349.1 ID=prot_H-paniculata_contig8333.16349.1|Name=mRNA_H-paniculata_contig8333.16349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFK
SDPCVYVY*
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