mRNA_H-paniculata_contig8333.16349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8333.16349.1
Unique NamemRNA_H-paniculata_contig8333.16349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 8.830e-63
Identity = 113/222 (50.90%), Postives = 152/222 (68.47%), Query Frame = 1 
Query:   22 ASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            A+++E+ +LK+  V+ L+P T+VP G K I S+W+FK KADGS KGR+VV GW Q PG D G TFAPVCRLQ I M+   A ++NLE  Q+D + AFL AD+ E V+V+  PG+E  +++   +VM+L KS+Y L QSPSNW+  I  LL E GF   KSD C+Y+Y   +  V LTLYVDD+LL G +  A+  IK+KL  RF+MTD+  + LVL M + R
Sbjct:   68 AAEREIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDMGGVKLVLGMEIKR 289
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 4.650e-62
Identity = 113/222 (50.90%), Postives = 151/222 (68.02%), Query Frame = 1 
Query:   22 ASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            A+++E+ +LK+  VY L+P T+VP G K I S+W+FK KA GS KGR+V  GW Q PG D G T+APVCR Q I M+  IA ++NLE  Q+D + AFL AD+ E V+V+  PG+E  D++   +VM+L KS+Y L QSPSNW+  I   L E GF   KSD CVY+Y   +  V LTLYVDD+LL G + +A+  IK+KLT RF MTD+ ++ LVL M + R
Sbjct:  477 AAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKR 698
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.790e-60
Identity = 110/222 (49.55%), Postives = 150/222 (67.57%), Query Frame = 1 
Query:   22 ASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            A+++E+ +L    VY L+P ++VP   K I S+W+FK KADG+ KGR+V  GW Q PG D G T+APVCR+Q + MV  I  E+NL   Q+D + AFL AD++EEV+V+  PG+E  D++   +VM+L KS+Y L QSP NW+  I  +L E GF + KSDPCVY+Y  + A + LTLYVDD+LL G D  A+  +K KL  RF MTD+ + SLVL M + R
Sbjct: 1169 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRR 1390
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.810e-60
Identity = 110/222 (49.55%), Postives = 150/222 (67.57%), Query Frame = 1 
Query:   22 ASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            A+++E+ +L    VY L+P ++VP   K I S+W+FK KADG+ KGR+V  GW Q PG D G T+APVCR+Q + MV  I  E+NL   Q+D + AFL AD++EEV+V+  PG+E  D++   +VM+L KS+Y L QSP NW+  I  +L E GF + KSDPCVY+Y  + A + LTLYVDD+LL G D  A+  +K KL  RF MTD+ + SLVL M + R
Sbjct: 1334 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRR 1555
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.880e-58
Identity = 107/222 (48.20%), Postives = 148/222 (66.67%), Query Frame = 1 
Query:   22 ASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            A+++E+ +L    VY L+P ++VP   K I S+W+FK KADG+ KGR+V  GW Q PG D G T+APVCR+Q + MV  I  E+NL   Q+D + AFL  D+ EEV+V+  PG+E  D++   +VM+L +S+Y L QSP NW+  I  +L E GF + KSDPCVY+Y  + A + LTLYVDD+LL G D  A+  +K KL  RF MT++ + SLVL M + R
Sbjct:  950 AAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTNLGEASLVLGMEIRR 1171
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.400e-57
Identity = 107/232 (46.12%), Postives = 144/232 (62.07%), Query Frame = 1 
Query:   31 KEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL--------------GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            +E+ +L    VY L+P ++VP G K I S+W+FK KADG+ KGR+V  GW Q PG D G T+APVCR+Q + MV  I  E+NL   Q+D + AFL AD++EEV+V+  PG+E  D++   +VM+L KS+Y L QSP NW+  I  +L E GF + KSDPCVY+Y  + A + LTLYVDD+LL              G  L  + R   KL  RF MTD+ + S  L M + R
Sbjct:  151 REMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRR 382
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.530e-55
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 1 
Query:   16 KEASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL 576
            K A+DKE+ +L+   VY L+P T VP GH +I S+W+FK+K + + K R+V  GW Q PG D G TFAPVCRLQ I MV AIAAE +L+  QLD   AFL AD+EE V+V+MAPGYE  +  E+ +VM+L KS+  L QSP +W   I   L E GF   KSD CVY+Y  +N  V+LTLYVDD+L+
Sbjct:  318 KAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 8.070e-52
Identity = 101/216 (46.76%), Postives = 141/216 (65.28%), Query Frame = 1 
Query:   43 NLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            NL+K+NVY L+P++SVP G KI+ ++++FK K DG  K R+VV G RQ PG D GR++APVCR+  I M  AI    N    QLD   AFLNA  + +VYV+ APG    +     P+V +L +S+Y L QSP+ W   + + L  FG+K  +SDPCVYVY   N  VILT+YVDD+L+ G D + +++ K++LT RF MTD+ ++  VL + V R
Sbjct:    3 NLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRVLGIDVQR 218
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 3.050e-50
Identity = 104/225 (46.22%), Postives = 146/225 (64.89%), Query Frame = 1 
Query:   16 KEASDKEVTNLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            K A  KE+ NL+K+NVY L+P++SVP G KI+ ++++FK K DG  K R+VV G RQ PG D GR++APVCR+  I M  AI    N    QLD   AFLNA  + +VYV+ APG    +     P+V +L +S+Y L QSP+ W   + + L  FG+K  +SDPCVYVY   N  VILT+YVDD+L+ G D + +++ K++LT RF MTD+ ++  +L + V R
Sbjct:  358 KGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQR 582
[Close]
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 8.320e-50
Identity = 100/216 (46.30%), Postives = 140/216 (64.81%), Query Frame = 1 
Query:   43 NLKKNNVYTLLPVTSVPSGHKIIDSRWIFKIKADGSKKGRIVVLGWRQAPGHDSGRTFAPVCRLQRIHMVLAIAAEYNLES*QLDHNIAFLNADVEEEVYVKMAPGYEEFDE-NEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFKSDPCVYVY*ESNATVILTLYVDDVLL-GMDLKALERIKQKLTSRFSMTDVEDMSLVLRMGVTR 684
            NL+K+NVY L+P++SVP G KI+ ++++FK K DG  K R+VV G RQ PG D GR++APVCR+  I M  AI    N    QLD   AFLNA  +  VYV+ APG    +     P+V +L +S+Y L QSP+ W   + + L  FG+K  +SDPCVYVY   N  VILT+YVDD+L+ G D + +++ K++LT RF MTD+ ++  +L + V R
Sbjct:    3 NLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQR 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8333.16349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWT4_9PHAE8.830e-6350.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE4.650e-6250.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE2.790e-6049.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE2.810e-6049.55Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.880e-5848.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE1.400e-5746.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE1.530e-5553.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K066_9PHAE8.070e-5246.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE3.050e-5046.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE8.320e-5046.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8333contigH-paniculata_contig8333:217..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size684
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8333.16349.1prot_H-paniculata_contig8333.16349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8333 376..552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.11337-UTR-H-paniculata_contig8333:216..3751622931047.11337-UTR-H-paniculata_contig8333:216..375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8333 217..375 -
1691481565.4948583-UTR-H-paniculata_contig8333:216..3751691481565.4948583-UTR-H-paniculata_contig8333:216..375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8333 217..375 -
1622931047.1471047-UTR-H-paniculata_contig8333:552..9001622931047.1471047-UTR-H-paniculata_contig8333:552..900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8333 553..900 -
1691481565.5158088-UTR-H-paniculata_contig8333:552..9001691481565.5158088-UTR-H-paniculata_contig8333:552..900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8333 553..900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.1278713-CDS-H-paniculata_contig8333:375..5521622931047.1278713-CDS-H-paniculata_contig8333:375..552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8333 376..552 -
1691481565.5056276-CDS-H-paniculata_contig8333:375..5521691481565.5056276-CDS-H-paniculata_contig8333:375..552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8333 376..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8333.16349.1

>prot_H-paniculata_contig8333.16349.1 ID=prot_H-paniculata_contig8333.16349.1|Name=mRNA_H-paniculata_contig8333.16349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MAPGYEEFDENEVPVVMRLVKSIYSLRQSPSNWWGNIGKLLAEFGFKSFK
SDPCVYVY*
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mRNA from alignment at H-paniculata_contig8333:217..900-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8333.16349.1 ID=mRNA_H-paniculata_contig8333.16349.1|Name=mRNA_H-paniculata_contig8333.16349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=684bp|location=Sequence derived from alignment at H-paniculata_contig8333:217..900- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGACGCAGCGGAAGGAGGCCTCAGACAAAGAAGTGACAAACCTGAA
AAAGAACAATGTCTACACTTTATTACCGGTGACCTCTGTCCCCAGCGGAC
ACAAAATTATCGATTCTCGATGGATCTTCAAGATCAAGGCCGACGGCTCG
AAGAAGGGACGCATCGTTGTGCTAGGATGGAGGCAAGCGCCCGGTCATGA
CAGCGGCAGGACGTTCGCTCCGGTCTGCAGACTCCAGAGGATCCACATGG
TGCTGGCGATAGCGGCGGAGTACAATCTGGAGAGCTGACAACTCGACCAC
AACATTGCATTTCTGAACGCTGACGTCGAGGAGGAGGTATATGTCAAGAT
GGCACCAGGGTACGAGGAGTTCGATGAAAACGAAGTTCCAGTGGTAATGA
GGCTTGTAAAGAGTATCTATAGTCTTCGCCAGAGTCCATCGAACTGGTGG
GGGAATATCGGTAAACTTCTGGCGGAGTTCGGTTTCAAAAGCTTCAAGTC
AGACCCATGCGTTTACGTCTACTGAGAAAGCAACGCTACTGTAATTTTGA
CCCTGTACGTCGACGACGTTCTTCTCGGAATGGACCTCAAGGCGCTGGAG
CGGATCAAGCAGAAGCTGACCAGCCGTTTCTCAATGACGGACGTGGAAGA
TATGTCGTTAGTGCTCAGGATGGGCGTCACCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8333:217..900-

>mRNA_H-paniculata_contig8333.16349.1 ID=mRNA_H-paniculata_contig8333.16349.1|Name=mRNA_H-paniculata_contig8333.16349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig8333:217..900- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACCAGGGTACGAGGAGTTCGATGAAAACGAAGTTCCAGTGGTAAT
GAGGCTTGTAAAGAGTATCTATAGTCTTCGCCAGAGTCCATCGAACTGGT
GGGGGAATATCGGTAAACTTCTGGCGGAGTTCGGTTTCAAAAGCTTCAAG
TCAGACCCATGCGTTTACGTCTACTGAATGGCACCAGGGTACGAGGAGTT
CGATGAAAACGAAGTTCCAGTGGTAATGAGGCTTGTAAAGAGTATCTATA
GTCTTCGCCAGAGTCCATCGAACTGGTGGGGGAATATCGGTAAACTTCTG
GCGGAGTTCGGTTTCAAAAGCTTCAAGTCAGACCCATGCGTTTACGTCTA
CTGA
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